data/trnascan-se-2.0.7+ds/EukHighConfidenceFilter.in:778: Undet ==> Under
data/trnascan-se-2.0.7+ds/EukHighConfidenceFilter.in:1068: Supres ==> Suppress
data/trnascan-se-2.0.7+ds/tRNAscan-SE.src:259: chunck ==> chunk
data/trnascan-se-2.0.7+ds/tRNAscan-SE.src:736: seach ==> search
data/trnascan-se-2.0.7+ds/Demo/Example1-tRNAs.out:5: Ser ==> Set
data/trnascan-se-2.0.7+ds/Demo/Example1-tRNAs.out:5: Ser ==> Set
data/trnascan-se-2.0.7+ds/Demo/Example2-tRNAs.out:6: Ser ==> Set
data/trnascan-se-2.0.7+ds/Demo/Example2-tRNAs.out:6: Ser ==> Set
data/trnascan-se-2.0.7+ds/Demo/Example1-tRNAs.iso:1: Ser ==> Set
data/trnascan-se-2.0.7+ds/Demo/Example1-tRNAs.iso:3: Ser ==> Set
data/trnascan-se-2.0.7+ds/Demo/Example2-tRNAs.iso:1: Ser ==> Set
data/trnascan-se-2.0.7+ds/Demo/Example2-tRNAs.iso:4: Ser ==> Set
data/trnascan-se-2.0.7+ds/Demo/Example2-tRNAs.ss:16: Ser ==> Set
data/trnascan-se-2.0.7+ds/Demo/Example1-tRNAs.stats:76: Ser ==> Set
data/trnascan-se-2.0.7+ds/Demo/Example1-tRNAs.stats:89: Supres ==> Suppress
data/trnascan-se-2.0.7+ds/Demo/Example2-tRNAs.stats:76: Ser ==> Set
data/trnascan-se-2.0.7+ds/Demo/Example2-tRNAs.stats:89: Supres ==> Suppress
data/trnascan-se-2.0.7+ds/Demo/Example1-tRNAs.ss:10: Ser ==> Set
data/trnascan-se-2.0.7+ds/src/trnascan.c:648: lengthes ==> lengths
data/trnascan-se-2.0.7+ds/src/trnascan.c:1021: searchs ==> searches
data/trnascan-se-2.0.7+ds/src/trnascan.c:1052: lengthes ==> lengths
data/trnascan-se-2.0.7+ds/src/trnascan.c:1721: Modifed ==> Modified
data/trnascan-se-2.0.7+ds/src/trnascan.c:1838: Ser ==> Set
data/trnascan-se-2.0.7+ds/src/trnascan.c:1839: Ser ==> Set
data/trnascan-se-2.0.7+ds/src/trnascan.c:1841: Ser ==> Set
data/trnascan-se-2.0.7+ds/src/trnascan.c:1842: Ser ==> Set
data/trnascan-se-2.0.7+ds/src/trnascan.c:1843: Ser ==> Set
data/trnascan-se-2.0.7+ds/src/trnascan.c:1845: Ser ==> Set
data/trnascan-se-2.0.7+ds/src/selex.c:15: supercedes ==> supersedes
data/trnascan-se-2.0.7+ds/src/debug.c:180: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/mpcovels_main.c:226: blockIn ==> blocking
data/trnascan-se-2.0.7+ds/src/mpcovels_main.c:291: blockIn ==> blocking
data/trnascan-se-2.0.7+ds/src/mpcovels_main.c:330: blockIn ==> blocking
data/trnascan-se-2.0.7+ds/src/mpcovels_main.c:343: blockIn ==> blocking
data/trnascan-se-2.0.7+ds/src/mpcovels_main.c:344: blockIn ==> blocking
data/trnascan-se-2.0.7+ds/src/mpcovels_main.c:345: blockIn ==> blocking
data/trnascan-se-2.0.7+ds/src/mpcovels_main.c:346: blockIn ==> blocking
data/trnascan-se-2.0.7+ds/src/structs.h:98: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/structs.h:117: lod ==> load
data/trnascan-se-2.0.7+ds/src/structs.h:182: alloced ==> allocated
data/trnascan-se-2.0.7+ds/src/structs.h:210: reponsible ==> responsible
data/trnascan-se-2.0.7+ds/src/konings.c:256: accomodate ==> accommodate
data/trnascan-se-2.0.7+ds/src/lengthdist.c:144: alloced ==> allocated
data/trnascan-se-2.0.7+ds/src/align.c:77: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/align.c:82: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/align.c:85: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/align.c:88: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/align.c:89: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/align.c:90: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/align.c:91: reponsible ==> responsible
data/trnascan-se-2.0.7+ds/src/align.c:92: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/align.c:100: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/model.c:49: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/model.c:53: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/model.c:57: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/model.c:57: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/model.c:72: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/model.c:96: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/model.c:98: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/model.c:99: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/model.c:100: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/model.c:101: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/model.c:102: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/model.c:123: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/model.c:123: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/model.c:126: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/model.c:129: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/model.c:129: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/model.c:130: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/model.c:133: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/model.c:136: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/model.c:136: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/model.c:137: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/model.c:140: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/model.c:203: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/model.c:207: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/model.c:207: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/model.c:229: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/model.c:229: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/model.c:234: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/model.c:275: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/model.c:282: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/model.c:302: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/model.c:307: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/model.c:320: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/model.c:321: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/model.c:329: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/model.c:330: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/model.c:338: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/model.c:339: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/model.c:347: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/model.c:348: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/model.c:356: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/model.c:357: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/model.c:364: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/model.c:526: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/model.c:530: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/model.c:530: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/model.c:537: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/model.c:537: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/model.c:542: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/model.c:583: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/model.c:590: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/model.c:604: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/model.c:609: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/model.c:621: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/model.c:622: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/model.c:630: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/model.c:631: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/model.c:639: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/model.c:640: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/model.c:648: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/model.c:649: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/model.c:657: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/model.c:658: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/model.c:665: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/smallviterbi.c:615: reponsible ==> responsible
data/trnascan-se-2.0.7+ds/src/modelmaking.c:33: reponsible ==> responsible
data/trnascan-se-2.0.7+ds/src/modelmaking.c:106: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/modelmaking.c:110: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/modelmaking.c:113: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/modelmaking.c:114: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/modelmaking.c:281: occurence ==> occurrence
data/trnascan-se-2.0.7+ds/src/iupac.c:141: Ser ==> Set
data/trnascan-se-2.0.7+ds/src/iupac.c:143: Ser ==> Set
data/trnascan-se-2.0.7+ds/src/iupac.c:184: Ser ==> Set
data/trnascan-se-2.0.7+ds/src/iupac.c:185: Ser ==> Set
data/trnascan-se-2.0.7+ds/src/iupac.c:186: Ser ==> Set
data/trnascan-se-2.0.7+ds/src/iupac.c:187: Ser ==> Set
data/trnascan-se-2.0.7+ds/src/alignio.c:92: dealign ==> dealing
data/trnascan-se-2.0.7+ds/src/dbmalloc.h:210: beyound ==> beyond
data/trnascan-se-2.0.7+ds/src/dbmalloc.h:212: boundry ==> boundary
data/trnascan-se-2.0.7+ds/src/dbmalloc.h:452: enhancments ==> enhancements
data/trnascan-se-2.0.7+ds/src/dbmalloc.h:511: wierd ==> weird
data/trnascan-se-2.0.7+ds/src/dbmalloc.h:538: statment ==> statement
data/trnascan-se-2.0.7+ds/src/squid.h:197: alloced ==> allocated
data/trnascan-se-2.0.7+ds/src/viterbi.c:468: reponsible ==> responsible
data/trnascan-se-2.0.7+ds/src/eufind_main.c:7: matix ==> matrix
data/trnascan-se-2.0.7+ds/src/interleaved.c:17: supercedes ==> supersedes
data/trnascan-se-2.0.7+ds/src/sqio.c:373: endIG ==> ending
data/trnascan-se-2.0.7+ds/src/sqio.c:393: endIG ==> ending
data/trnascan-se-2.0.7+ds/src/sqio.c:1515: alloced ==> allocated
data/trnascan-se-2.0.7+ds/src/pavesi.c:8: matix ==> matrix
data/trnascan-se-2.0.7+ds/src/pavesi.c:379: tranlation ==> translation
data/trnascan-se-2.0.7+ds/src/emit.c:57: reponsible ==> responsible
data/trnascan-se-2.0.7+ds/src/emit.c:106: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/emit.c:110: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/emit.c:112: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/emit.c:242: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/emit.c:246: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/emit.c:248: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/emit.c:355: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/emit.c:368: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/emit.c:371: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/emit.c:379: MATC ==> MATCH
data/trnascan-se-2.0.7+ds/src/emit.c:398: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/emit.c:429: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/emit.c:430: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/emit.c:431: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/emit.c:432: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/emit.c:471: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/emit.c:473: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/emit.c:483: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/emit.c:486: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/emit.c:512: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/emit.c:514: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/emit.c:545: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/emit.c:546: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/emit.c:547: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/emit.c:548: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/trace.c:339: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/trace.c:340: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/trace.c:355: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/trace.c:356: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/trace.c:374: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/trace.c:375: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/trace.c:390: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/trace.c:391: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/trace.c:406: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/trace.c:407: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/trace.c:418: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/trace.c:472: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/trace.c:473: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/trace.c:473: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/trace.c:473: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/trace.c:475: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/trace.c:548: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/trace.c:549: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/trace.c:557: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/trace.c:558: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/trace.c:567: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/trace.c:568: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/trace.c:576: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/trace.c:577: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/trace.c:586: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/trace.c:587: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/trace.c:594: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/gnuregex.c:1069: tempory ==> temporary
data/trnascan-se-2.0.7+ds/src/prior.c:71: alloced ==> allocated
data/trnascan-se-2.0.7+ds/src/save.c:44: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/save.c:45: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/save.c:45: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/save.c:51: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/save.c:56: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/save.c:60: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/save.c:67: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/save.c:72: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/save.c:76: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/save.c:114: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/save.c:117: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/save.c:118: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/save.c:121: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/save.c:124: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/save.c:125: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/save.c:128: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/save.c:129: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/save.c:130: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/save.c:228: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/save.c:229: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/save.c:229: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/save.c:235: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/save.c:241: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/save.c:245: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/save.c:252: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/save.c:257: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/save.c:261: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/save.c:295: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/save.c:298: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/save.c:299: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/save.c:302: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/save.c:305: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/save.c:306: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/save.c:309: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/save.c:310: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/save.c:311: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/probify.c:72: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/probify.c:74: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/probify.c:75: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/probify.c:75: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/probify.c:77: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/probify.c:77: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/probify.c:77: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/probify.c:80: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/probify.c:82: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/probify.c:83: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/probify.c:84: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/probify.c:85: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/probify.c:86: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/probify.c:90: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/probify.c:91: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/probify.c:95: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/probify.c:96: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/probify.c:100: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/probify.c:104: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/probify.c:105: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/probify.c:110: nd ==> and, 2nd
data/trnascan-se-2.0.7+ds/src/misc.c:53: ND ==> AND, 2ND
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal-Pro.cm:7: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal-Pro.cm:402: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert-Gly.cm:7: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert-Gly.cm:402: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-arch-3h.cm:7: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-arch-3h.cm:264: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal-Lys.cm:7: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal-Lys.cm:402: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-bact-ns.cm:7: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-bact-ns.cm:415: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert-Gln.cm:7: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert-Gln.cm:402: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert-Tyr.cm:7: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert-Tyr.cm:402: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert-Ile.cm:7: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert-Ile.cm:402: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal-Met.cm:7: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal-Met.cm:402: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-arch-SeC.cm:7: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-arch-SeC.cm:394: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal-Ala.cm:7: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal-Ala.cm:402: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal:7: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal:402: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal:698: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal:1093: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal:1389: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal:1784: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal:2080: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal:2475: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal:2771: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal:3166: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal:3462: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal:3857: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal:4153: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal:4548: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal:4844: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal:5239: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal:5535: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal:5930: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal:6226: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal:6621: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal:6917: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal:7312: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal:7608: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal:8003: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal:8299: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal:8694: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal:8990: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal:9385: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal:9681: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal:10076: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal:10372: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal:10767: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal:11063: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal:11397: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal:11651: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal:12046: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal:12342: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal:12737: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal:13033: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal:13428: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal:13724: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal:14119: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal:14415: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal:14810: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert-Asn.cm:7: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert-Asn.cm:402: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal-Gly.cm:7: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal-Gly.cm:402: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert-Lys.cm:7: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert-Lys.cm:402: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert-Pro.cm:7: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert-Pro.cm:402: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-arch-5h.cm:7: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-arch-5h.cm:187: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/Thaum-BHB-noncan.cm:8: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/Thaum-BHB-noncan.cm:191: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-1415-ns.cm:7: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-1415-ns.cm:403: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal-Gln.cm:7: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal-Gln.cm:402: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-euk-iso:8: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-euk-iso:330: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-euk-iso:573: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-euk-iso:899: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-euk-iso:1145: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-euk-iso:1475: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-euk-iso:1724: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-euk-iso:2046: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-euk-iso:2289: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-euk-iso:2611: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-euk-iso:2854: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-euk-iso:3176: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-euk-iso:3419: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-euk-iso:3741: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-euk-iso:3984: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-euk-iso:4302: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-euk-iso:4542: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-euk-iso:4864: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-euk-iso:5107: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-euk-iso:5437: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-euk-iso:5686: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-euk-iso:6008: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-euk-iso:6251: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-euk-iso:6626: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-euk-iso:6905: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-euk-iso:7231: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-euk-iso:7477: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-euk-iso:7803: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-euk-iso:8049: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-euk-iso:8375: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-euk-iso:8621: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-euk-iso:8943: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-euk-iso:9186: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-euk-iso:9567: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-euk-iso:9855: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-euk-iso:10222: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-euk-iso:10495: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-euk-iso:10821: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-euk-iso:11067: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-euk-iso:11389: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-euk-iso:11632: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-euk-iso:12022: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-euk-iso:12316: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-euk-iso:12642: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal-Tyr.cm:7: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal-Tyr.cm:402: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal-Ile.cm:7: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal-Ile.cm:402: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert-Met.cm:7: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert-Met.cm:402: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal-Asn.cm:7: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal-Asn.cm:402: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert-Ala.cm:7: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert-Ala.cm:402: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert-SerTGA.cm:7: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert-SerTGA.cm:402: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/Cren-eury-BHB-noncan.cm:8: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/Cren-eury-BHB-noncan.cm:191: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert-Glu.cm:7: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert-Glu.cm:402: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert-Arg.cm:7: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert-Arg.cm:402: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal-Phe.cm:7: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal-Phe.cm:402: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal-Cys.cm:7: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal-Cys.cm:402: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert-LeuTAA.cm:7: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert-LeuTAA.cm:402: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal-Asp.cm:7: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal-Asp.cm:402: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-bact.cm:7: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-bact.cm:414: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal-Thr.cm:7: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal-Thr.cm:402: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal-SerGCT.cm:7: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal-SerGCT.cm:341: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal-SerTGA.cm:7: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal-SerTGA.cm:402: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert-Trp.cm:7: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert-Trp.cm:402: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal-His.cm:7: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal-His.cm:402: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert-SerGCT.cm:7: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert-SerGCT.cm:341: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal-LeuTAA.cm:7: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal-LeuTAA.cm:402: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal-Val.cm:7: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal-Val.cm:402: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert:7: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert:402: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert:698: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert:1093: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert:1389: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert:1784: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert:2080: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert:2475: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert:2771: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert:3166: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert:3462: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert:3857: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert:4153: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert:4548: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert:4844: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert:5239: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert:5535: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert:5930: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert:6226: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert:6621: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert:6917: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert:7312: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert:7608: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert:8003: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert:8299: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert:8694: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert:8990: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert:9385: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert:9681: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert:10076: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert:10372: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert:10767: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert:11063: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert:11397: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert:11651: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert:12046: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert:12342: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert:12737: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert:13033: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert:13428: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert:13724: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert:14119: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert:14415: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert:14810: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-arch-ns.cm:7: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-arch-ns.cm:415: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-euk-ns.cm:7: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-euk-ns.cm:403: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert-Asp.cm:7: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert-Asp.cm:402: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert-Thr.cm:7: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert-Thr.cm:402: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal-Arg.cm:7: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal-Arg.cm:402: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal-Glu.cm:7: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal-Glu.cm:402: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert-Cys.cm:7: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert-Cys.cm:402: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-arch.cm:7: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-arch.cm:414: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert-Phe.cm:7: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert-Phe.cm:402: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert-LeuTAG.cm:7: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert-LeuTAG.cm:402: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal-Trp.cm:7: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal-Trp.cm:402: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-1415.cm:7: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-1415.cm:402: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-bact-iso:8: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-bact-iso:346: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-bact-iso:601: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-bact-iso:943: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-bact-iso:1201: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-bact-iso:1539: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-bact-iso:1794: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-bact-iso:2136: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-bact-iso:2394: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-bact-iso:2728: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-bact-iso:2980: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-bact-iso:3322: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-bact-iso:3580: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-bact-iso:3902: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-bact-iso:4145: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-bact-iso:4467: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-bact-iso:4710: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-bact-iso:5044: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-bact-iso:5296: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-bact-iso:5626: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-bact-iso:5875: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-bact-iso:6217: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-bact-iso:6475: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-bact-iso:6817: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-bact-iso:7075: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-bact-iso:7455: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-bact-iso:7737: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-bact-iso:8075: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-bact-iso:8330: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-bact-iso:8672: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-bact-iso:8930: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-bact-iso:9268: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-bact-iso:9523: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-bact-iso:9865: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-bact-iso:10123: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-bact-iso:10535: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-bact-iso:10847: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-bact-iso:11244: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-bact-iso:11541: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-bact-iso:11879: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-bact-iso:12134: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-bact-iso:12456: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-bact-iso:12699: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-bact-iso:13083: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-bact-iso:13368: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-bact-iso:13706: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-euk-SeC.cm:7: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-euk-SeC.cm:387: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-ns.cm:7: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-ns.cm:403: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-arch-iso:8: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-arch-iso:416: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-arch-iso:722: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-arch-iso:1130: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-arch-iso:1436: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-arch-iso:1844: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-arch-iso:2150: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-arch-iso:2558: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-arch-iso:2864: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-arch-iso:3272: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-arch-iso:3578: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-arch-iso:3986: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-arch-iso:4292: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-arch-iso:4642: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-arch-iso:4906: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-arch-iso:5248: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-arch-iso:5506: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-arch-iso:5848: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-arch-iso:6106: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-arch-iso:6452: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-arch-iso:6713: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-arch-iso:7059: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-arch-iso:7320: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-arch-iso:7728: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-arch-iso:8034: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-arch-iso:8426: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-arch-iso:8717: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-arch-iso:9059: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-arch-iso:9317: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-arch-iso:9659: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-arch-iso:9917: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-arch-iso:10325: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-arch-iso:10631: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-arch-iso:10977: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-arch-iso:11238: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-arch-iso:11626: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-arch-iso:11920: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-arch-iso:12300: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-arch-iso:12582: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-arch-iso:12924: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-arch-iso:13182: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-arch-iso:13524: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-arch-iso:13782: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-arch-iso:14124: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-arch-iso:14382: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-arch-iso:14728: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert-Val.cm:7: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert-Val.cm:402: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-bact-SeC.cm:7: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-bact-SeC.cm:418: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf.cm:7: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf.cm:402: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal-LeuTAG.cm:7: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-mammal-LeuTAG.cm:402: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-euk.cm:7: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-euk.cm:402: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert-His.cm:7: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/models/TRNAinf-mito-vert-His.cm:402: ALPH ==> ALPHA
data/trnascan-se-2.0.7+ds/lib/tRNAscanSE/ResultFileReader.pm:165: Undet ==> Under
data/trnascan-se-2.0.7+ds/lib/tRNAscanSE/ResultFileReader.pm:314: Undet ==> Under
data/trnascan-se-2.0.7+ds/lib/tRNAscanSE/CM.pm:843: Ser ==> Set
data/trnascan-se-2.0.7+ds/lib/tRNAscanSE/CM.pm:843: Ser ==> Set
data/trnascan-se-2.0.7+ds/lib/tRNAscanSE/CM.pm:854: Ser ==> Set
data/trnascan-se-2.0.7+ds/lib/tRNAscanSE/CM.pm:854: Ser ==> Set
data/trnascan-se-2.0.7+ds/lib/tRNAscanSE/CM.pm:865: Ser ==> Set
data/trnascan-se-2.0.7+ds/lib/tRNAscanSE/CM.pm:865: Ser ==> Set
data/trnascan-se-2.0.7+ds/lib/tRNAscanSE/GeneticCode.pm:36: Undet ==> Under
data/trnascan-se-2.0.7+ds/lib/tRNAscanSE/GeneticCode.pm:386: Ser ==> Set
data/trnascan-se-2.0.7+ds/lib/tRNAscanSE/GeneticCode.pm:387: Ser ==> Set
data/trnascan-se-2.0.7+ds/lib/tRNAscanSE/GeneticCode.pm:388: ACN ==> CAN, ACNE
data/trnascan-se-2.0.7+ds/lib/tRNAscanSE/Utils.pm:31: ans ==> and
data/trnascan-se-2.0.7+ds/lib/tRNAscanSE/Utils.pm:37: ans ==> and
data/trnascan-se-2.0.7+ds/lib/tRNAscanSE/Utils.pm:38: ans ==> and
data/trnascan-se-2.0.7+ds/lib/tRNAscanSE/Utils.pm:41: ans ==> and
data/trnascan-se-2.0.7+ds/lib/tRNAscanSE/Utils.pm:43: ans ==> and
data/trnascan-se-2.0.7+ds/lib/tRNAscanSE/Utils.pm:46: ans ==> and
data/trnascan-se-2.0.7+ds/lib/tRNAscanSE/Utils.pm:54: ans ==> and
data/trnascan-se-2.0.7+ds/lib/tRNAscanSE/Utils.pm:95: exten ==> extent
data/trnascan-se-2.0.7+ds/lib/tRNAscanSE/Utils.pm:98: exten ==> extent
data/trnascan-se-2.0.7+ds/lib/tRNAscanSE/tRNA.pm:17: Ser ==> Set
data/trnascan-se-2.0.7+ds/lib/tRNAscanSE/tRNA.pm:18: Ser ==> Set
data/trnascan-se-2.0.7+ds/lib/tRNAscanSE/tRNA.pm:19: Ser ==> Set
data/trnascan-se-2.0.7+ds/lib/tRNAscanSE/Tscan.pm:228: occassionally ==> occasionally
data/trnascan-se-2.0.7+ds/lib/tRNAscanSE/Stats.pm:416: Supres ==> Suppress
data/trnascan-se-2.0.7+ds/lib/tRNAscanSE/Stats.pm:417: Supres ==> Suppress
data/trnascan-se-2.0.7+ds/lib/tRNAscanSE/Stats.pm:440: Supres ==> Suppress
data/trnascan-se-2.0.7+ds/lib/tRNAscanSE/Sequence.pm:10: wrting ==> writing
data/trnascan-se-2.0.7+ds/lib/tRNAscanSE/Sequence.pm:64: retreival ==> retrieval
data/trnascan-se-2.0.7+ds/lib/tRNAscanSE/ScanResult.pm:770: Undet ==> Under
data/trnascan-se-2.0.7+ds/lib/tRNAscanSE/ScanResult.pm:776: Undet ==> Under
data/trnascan-se-2.0.7+ds/lib/tRNAscanSE/ScanResult.pm:778: Ser ==> Set
data/trnascan-se-2.0.7+ds/lib/tRNAscanSE/ScanResult.pm:778: Undet ==> Under
data/trnascan-se-2.0.7+ds/lib/gcode/gcode.invmito:2: abreviation ==> abbreviation
data/trnascan-se-2.0.7+ds/lib/gcode/gcode.invmito:6: Ser ==> Set
data/trnascan-se-2.0.7+ds/lib/gcode/gcode.vertmito:2: abreviation ==> abbreviation
data/trnascan-se-2.0.7+ds/lib/gcode/gcode.ystmito:2: abreviation ==> abbreviation
data/trnascan-se-2.0.7+ds/lib/gcode/gcode.marsumito:2: abreviation ==> abbreviation
data/trnascan-se-2.0.7+ds/lib/gcode/gcode.echdmito:2: abreviation ==> abbreviation
data/trnascan-se-2.0.7+ds/lib/gcode/gcode.echdmito:5: Ser ==> Set
data/trnascan-se-2.0.7+ds/lib/gcode/gcode.othmito:2: abreviation ==> abbreviation
data/trnascan-se-2.0.7+ds/lib/gcode/gcode.cilnuc:2: abreviation ==> abbreviation
data/trnascan-se-2.0.7+ds/.pc/pkg-data.patch/tRNAscan-SE.src:259: chunck ==> chunk
data/trnascan-se-2.0.7+ds/.pc/pkg-data.patch/tRNAscan-SE.src:736: seach ==> search
data/trnascan-se-2.0.7+ds/.pc/pkg-data.patch/EukHighConfidenceFilter.in:778: Undet ==> Under
data/trnascan-se-2.0.7+ds/.pc/pkg-data.patch/EukHighConfidenceFilter.in:1068: Supres ==> Suppress
data/trnascan-se-2.0.7+ds/.pc/confdir.patch/tRNAscan-SE.src:259: chunck ==> chunk
data/trnascan-se-2.0.7+ds/.pc/confdir.patch/tRNAscan-SE.src:736: seach ==> search