data/allelecount-4.2.1/.gitignore: ASCII text data/allelecount-4.2.1/.travis.yml: ASCII text data/allelecount-4.2.1/CHANGES.md: ASCII text data/allelecount-4.2.1/Dockerfile: ASCII text data/allelecount-4.2.1/LICENCE: ASCII text data/allelecount-4.2.1/README.md: exported SGML document, UTF-8 Unicode text data/allelecount-4.2.1/build/opt-build-local.sh: Bourne-Again shell script, ASCII text executable data/allelecount-4.2.1/build/opt-build.sh: Bourne-Again shell script, ASCII text executable data/allelecount-4.2.1/c/src/alleleCounter.c: C source, ASCII text data/allelecount-4.2.1/c/src/bam_access.c: C source, ASCII text data/allelecount-4.2.1/c/src/bam_access.h: C source, ASCII text data/allelecount-4.2.1/c/src/dbg.h: C source, ASCII text data/allelecount-4.2.1/c/src/khash.h: C source, ASCII text data/allelecount-4.2.1/c/tests/bam_access_tests.c: C source, ASCII text data/allelecount-4.2.1/c/tests/minunit.h: C source, ASCII text data/allelecount-4.2.1/c/tests/runtests.sh: ASCII text data/allelecount-4.2.1/c/Makefile: makefile script, ASCII text data/allelecount-4.2.1/example/gender.loci: ASCII text data/allelecount-4.2.1/example/gender_chr.loci: ASCII text data/allelecount-4.2.1/perl/MANIFEST: ASCII text data/allelecount-4.2.1/perl/MANIFEST.SKIP: ASCII text data/allelecount-4.2.1/perl/Makefile.PL: Perl script text executable data/allelecount-4.2.1/perl/bin/alleleCounter.pl: Perl script text executable data/allelecount-4.2.1/perl/docs.tar.gz: gzip compressed data, last modified: Tue Mar 6 10:58:28 2018, from Unix, original size modulo 2^32 184320 data/allelecount-4.2.1/perl/lib/Sanger/CGP/AlleleCount.pm: Perl5 module source, ASCII text data/allelecount-4.2.1/perl/lib/Sanger/CGP/AlleleCount/Genotype.pm: Perl5 module source, ASCII text data/allelecount-4.2.1/perl/t/1_pm_compile.t: ASCII text data/allelecount-4.2.1/perl/t/2_pl_compile.t: ASCII text data/allelecount-4.2.1/perl/t/genotype.t: ASCII text data/allelecount-4.2.1/prerelease.sh: Bourne-Again shell script, ASCII text executable data/allelecount-4.2.1/setup.sh: Bourne-Again shell script, ASCII text executable data/allelecount-4.2.1/testData/loci_22.txt: ASCII text data/allelecount-4.2.1/testData/loci_22_bad.txt: ASCII text data/allelecount-4.2.1/testData/loci_snp6.txt: ASCII text data/allelecount-4.2.1/testData/test.bam: Blocked GNU Zip Format (BGZF; gzip compatible), block length 269 data/allelecount-4.2.1/testData/test.bam.bai: SAMtools BAI (BAM indexing format), with 1 reference sequences data/allelecount-4.2.1/testData/test.cram: CRAM version 3.0 (identified as test.cram) data/allelecount-4.2.1/testData/test.cram.crai: gzip compressed data, from Unix data/allelecount-4.2.1/testData/test10X.bam: Blocked GNU Zip Format (BGZF; gzip compatible), block length 1307 data/allelecount-4.2.1/testData/test10X.bam.bai: SAMtools BAI (BAM indexing format), with 25 reference sequences data/allelecount-4.2.1/testData/test10X.cnts: ASCII text data/allelecount-4.2.1/testData/test10X.loci: ASCII text data/allelecount-4.2.1/testData/test10X_true.cnts: ASCII text data/allelecount-4.2.1/debian/alleleCounter.1: troff or preprocessor input, ASCII text data/allelecount-4.2.1/debian/allelecount.install: ASCII text data/allelecount-4.2.1/debian/changelog: ASCII text data/allelecount-4.2.1/debian/control: ASCII text data/allelecount-4.2.1/debian/copyright: ASCII text data/allelecount-4.2.1/debian/createmanpages: POSIX shell script, ASCII text executable data/allelecount-4.2.1/debian/install: ASCII text data/allelecount-4.2.1/debian/liballelecount-perl.install: ASCII text data/allelecount-4.2.1/debian/liballelecount-perl.lintian-overrides: ASCII text data/allelecount-4.2.1/debian/lintian-overrides: ASCII text data/allelecount-4.2.1/debian/manpages: ASCII text data/allelecount-4.2.1/debian/patches/hardening.patch: unified diff output, ASCII text data/allelecount-4.2.1/debian/patches/series: ASCII text data/allelecount-4.2.1/debian/rules: a /usr/bin/make -f script, ASCII text executable data/allelecount-4.2.1/debian/salsa-ci.yml: ASCII text data/allelecount-4.2.1/debian/source/format: ASCII text data/allelecount-4.2.1/debian/tests/control: ASCII text data/allelecount-4.2.1/debian/tests/run-unit-test: Bourne-Again shell script, ASCII text executable data/allelecount-4.2.1/debian/upstream/metadata: ASCII text data/allelecount-4.2.1/debian/watch: ASCII text data/allelecount-4.2.1/.pc/.version: ASCII text data/allelecount-4.2.1/.pc/.quilt_patches: ASCII text data/allelecount-4.2.1/.pc/.quilt_series: ASCII text data/allelecount-4.2.1/.pc/applied-patches: ASCII text data/allelecount-4.2.1/.pc/hardening.patch/c/Makefile: makefile script, ASCII text