data/altree-1.3.1/progs/altree-convert: Perl script text executable data/altree-1.3.1/progs/altree-add-S: Perl script text executable data/altree-1.3.1/progs/altree: Perl script text executable data/altree-1.3.1/ALTree/SitePerTree.pm: Perl5 module source, ASCII text data/altree-1.3.1/ALTree/Foret.pm: Perl5 module source, ASCII text data/altree-1.3.1/ALTree/Import.pm: Perl5 module source, ISO-8859 text data/altree-1.3.1/ALTree/Chi2.pm: Perl5 module source, ISO-8859 text data/altree-1.3.1/ALTree/Sens.pm: Perl5 module source, ASCII text data/altree-1.3.1/ALTree/to_rewrite.pm: Perl5 module source, ISO-8859 text data/altree-1.3.1/ALTree/SiteSensPerForet.pm: Perl5 module source, ASCII text data/altree-1.3.1/ALTree/Site.pm: Perl5 module source, ASCII text data/altree-1.3.1/ALTree/Nanova.pm: Perl5 module source, ASCII text data/altree-1.3.1/ALTree/Tree.pm: Perl5 module source, ISO-8859 text data/altree-1.3.1/ALTree/Utils.pm: Perl5 module source, ASCII text data/altree-1.3.1/ALTree/SiteCollection.pm: Perl5 module source, ASCII text data/altree-1.3.1/ALTree/Base.pm: Perl5 module source, ASCII text data/altree-1.3.1/ALTree/SiteSens.pm: Perl5 module source, ASCII text data/altree-1.3.1/ALTree/Input.pm: Perl5 module source, ISO-8859 text data/altree-1.3.1/ALTree/Node.pm: Perl5 module source, ISO-8859 text data/altree-1.3.1/ALTree/SiteSensPerTree.pm: Perl5 module source, ISO-8859 text data/altree-1.3.1/ALTree/SitePerForet.pm: Perl5 module source, ISO-8859 text data/altree-1.3.1/README: ASCII text data/altree-1.3.1/Changes: UTF-8 Unicode text data/altree-1.3.1/MYMETA.json: JSON data data/altree-1.3.1/t/ALTree.t: awk or perl script, ASCII text data/altree-1.3.1/META.yml: ASCII text data/altree-1.3.1/test/create_file/phy-paml_file/create_file: POSIX shell script, ASCII text executable data/altree-1.3.1/test/create_file/phy-paml_file/trio.fmh: ASCII text data/altree-1.3.1/test/create_file/phy-paml_file/trio.phy: ASCII text data/altree-1.3.1/test/create_file/phy-paml_file/NUM: ASCII text data/altree-1.3.1/test/create_file/phy-paml_file/fam19_0.gm: ASCII text data/altree-1.3.1/test/create_file/phy-paml_file/fam19_0: ASCII text data/altree-1.3.1/test/create_file/phy-paml_file/fam19_0_H1_HAPLOTYPES: ASCII text data/altree-1.3.1/test/create_file/phy-paml_file/trio.prephy: ASCII text data/altree-1.3.1/test/create_file/phy-paml_file/nb_cas_control.txt: ASCII text data/altree-1.3.1/test/create_file/phy-paml_file/fam19_0_LDmeasuresCONTROLS.xt: ASCII text data/altree-1.3.1/test/create_file/phy-paml_file/fam19_0_LDmeasuresCASES.xt: ASCII text data/altree-1.3.1/test/create_file/paup_file/create_file: POSIX shell script, ASCII text executable data/altree-1.3.1/test/create_file/paup_file/caco.phase: ASCII text data/altree-1.3.1/test/create_file/paup_file/caco.prepaup: ASCII text data/altree-1.3.1/test/create_file/paup_file/caco.phase.out: ASCII text data/altree-1.3.1/test/create_file/paup_file/caco.phase.out_monitor: ASCII text data/altree-1.3.1/test/create_file/paup_file/nb_cas_control.txt: ASCII text data/altree-1.3.1/test/create_file/paup_file/caco.phase.out_pairs: ASCII text data/altree-1.3.1/test/create_file/paup_file/caco.phase.out_recom: ASCII text data/altree-1.3.1/test/create_file/paup_file/caco.phase.out_freqs: ASCII text data/altree-1.3.1/test/paup/ancestor_absent/localisation/test.res.log: ASCII text data/altree-1.3.1/test/paup/ancestor_absent/localisation/caco.loc: ASCII text data/altree-1.3.1/test/paup/ancestor_absent/localisation/test.tree: ASCII text data/altree-1.3.1/test/paup/ancestor_absent/localisation/et_caco.paup: ASCII text data/altree-1.3.1/test/paup/ancestor_absent/localisation/caco.paup: ASCII text data/altree-1.3.1/test/paup/ancestor_absent/localisation/nb_cas_control.txt: ASCII text data/altree-1.3.1/test/paup/ancestor_absent/localisation/run-prog: POSIX shell script, ASCII text executable data/altree-1.3.1/test/paup/ancestor_absent/association/test.res.log: ASCII text data/altree-1.3.1/test/paup/ancestor_absent/association/run_altree: POSIX shell script, ASCII text executable data/altree-1.3.1/test/paup/ancestor_absent/association/test.tree: ASCII text data/altree-1.3.1/test/paup/ancestor_absent/association/caco.paup: ASCII text data/altree-1.3.1/test/paup/ancestor_absent/association/nb_cas_control.txt: ASCII text data/altree-1.3.1/test/paup/ancestor_absent/association/1_caco.asso: ASCII text data/altree-1.3.1/test/paup/outgr_absent/localisation/test.res.log: ASCII text data/altree-1.3.1/test/paup/outgr_absent/localisation/caco.loc: ASCII text data/altree-1.3.1/test/paup/outgr_absent/localisation/test.tree: ASCII text data/altree-1.3.1/test/paup/outgr_absent/localisation/et_caco.paup: ASCII text data/altree-1.3.1/test/paup/outgr_absent/localisation/caco.paup: ASCII text data/altree-1.3.1/test/paup/outgr_absent/localisation/nb_cas_control.txt: ASCII text data/altree-1.3.1/test/paup/outgr_absent/localisation/run-prog: POSIX shell script, ASCII text executable data/altree-1.3.1/test/paup/outgr_absent/association/test.res.log: ASCII text data/altree-1.3.1/test/paup/outgr_absent/association/run_altree: POSIX shell script, ASCII text executable data/altree-1.3.1/test/paup/outgr_absent/association/test.tree: ASCII text data/altree-1.3.1/test/paup/outgr_absent/association/caco.paup: ASCII text data/altree-1.3.1/test/paup/outgr_absent/association/nb_cas_control.txt: ASCII text data/altree-1.3.1/test/paup/outgr_absent/association/1_caco.asso: ASCII text data/altree-1.3.1/test/paup/unrooted_present/localisation/test.res.log: ASCII text data/altree-1.3.1/test/paup/unrooted_present/localisation/caco.loc: ASCII text data/altree-1.3.1/test/paup/unrooted_present/localisation/test.tree: ASCII text data/altree-1.3.1/test/paup/unrooted_present/localisation/et_caco.paup: ASCII text data/altree-1.3.1/test/paup/unrooted_present/localisation/caco.paup: ASCII text data/altree-1.3.1/test/paup/unrooted_present/localisation/nb_cas_control.txt: ASCII text data/altree-1.3.1/test/paup/unrooted_present/localisation/run-prog: POSIX shell script, ASCII text executable data/altree-1.3.1/test/paup/unrooted_present/association/test.res.log: ASCII text data/altree-1.3.1/test/paup/unrooted_present/association/run_altree: POSIX shell script, ASCII text executable data/altree-1.3.1/test/paup/unrooted_present/association/test.tree: ASCII text data/altree-1.3.1/test/paup/unrooted_present/association/caco.paup: ASCII text data/altree-1.3.1/test/paup/unrooted_present/association/nb_cas_control.txt: ASCII text data/altree-1.3.1/test/paup/unrooted_present/association/1_caco.asso: ASCII text data/altree-1.3.1/test/paup/ancestor_present/localisation/test.res.log: ASCII text data/altree-1.3.1/test/paup/ancestor_present/localisation/caco.loc: ASCII text data/altree-1.3.1/test/paup/ancestor_present/localisation/test.tree: ASCII text data/altree-1.3.1/test/paup/ancestor_present/localisation/et_caco.paup: ASCII text data/altree-1.3.1/test/paup/ancestor_present/localisation/caco.paup: ASCII text data/altree-1.3.1/test/paup/ancestor_present/localisation/nb_cas_control.txt: ASCII text data/altree-1.3.1/test/paup/ancestor_present/localisation/run-prog: POSIX shell script, ASCII text executable data/altree-1.3.1/test/paup/ancestor_present/association/test.res.log: ASCII text data/altree-1.3.1/test/paup/ancestor_present/association/run_altree: POSIX shell script, ASCII text executable data/altree-1.3.1/test/paup/ancestor_present/association/test.tree: ASCII text data/altree-1.3.1/test/paup/ancestor_present/association/caco.paup: ASCII text data/altree-1.3.1/test/paup/ancestor_present/association/nb_cas_control.txt: ASCII text data/altree-1.3.1/test/paup/ancestor_present/association/1_caco.asso: ASCII text data/altree-1.3.1/test/paup/outgr_present/localisation/test.res.log: ASCII text data/altree-1.3.1/test/paup/outgr_present/localisation/caco.loc: ASCII text data/altree-1.3.1/test/paup/outgr_present/localisation/test.tree: ASCII text data/altree-1.3.1/test/paup/outgr_present/localisation/et_caco.paup: ASCII text data/altree-1.3.1/test/paup/outgr_present/localisation/caco.paup: ASCII text data/altree-1.3.1/test/paup/outgr_present/localisation/nb_cas_control.txt: ASCII text data/altree-1.3.1/test/paup/outgr_present/localisation/run-prog: POSIX shell script, ASCII text executable data/altree-1.3.1/test/paup/outgr_present/association/test.res.log: ASCII text data/altree-1.3.1/test/paup/outgr_present/association/run_altree: POSIX shell script, ASCII text executable data/altree-1.3.1/test/paup/outgr_present/association/test.tree: ASCII text data/altree-1.3.1/test/paup/outgr_present/association/caco.paup: ASCII text data/altree-1.3.1/test/paup/outgr_present/association/nb_cas_control.txt: ASCII text data/altree-1.3.1/test/paup/outgr_present/association/1_caco.asso: ASCII text data/altree-1.3.1/test/paup/unrooted_absent/localisation/test.res.log: ASCII text data/altree-1.3.1/test/paup/unrooted_absent/localisation/caco.loc: ASCII text data/altree-1.3.1/test/paup/unrooted_absent/localisation/test.tree: ASCII text data/altree-1.3.1/test/paup/unrooted_absent/localisation/et_caco.paup: ASCII text data/altree-1.3.1/test/paup/unrooted_absent/localisation/caco.paup: ASCII text data/altree-1.3.1/test/paup/unrooted_absent/localisation/nb_cas_control.txt: ASCII text data/altree-1.3.1/test/paup/unrooted_absent/localisation/run-prog: POSIX shell script, ASCII text executable data/altree-1.3.1/test/paup/unrooted_absent/association/test.res.log: ASCII text data/altree-1.3.1/test/paup/unrooted_absent/association/run_altree: POSIX shell script, ASCII text executable data/altree-1.3.1/test/paup/unrooted_absent/association/test.tree: ASCII text data/altree-1.3.1/test/paup/unrooted_absent/association/caco.paup: ASCII text data/altree-1.3.1/test/paup/unrooted_absent/association/nb_cas_control.txt: ASCII text data/altree-1.3.1/test/paup/unrooted_absent/association/1_caco.asso: ASCII text data/altree-1.3.1/test/paml/tree_building_using_phyML/trio2.phy_phyml_lk.txt: ASCII text data/altree-1.3.1/test/paml/tree_building_using_phyML/trio2.phy_phyml_stat.txt: ASCII text data/altree-1.3.1/test/paml/tree_building_using_phyML/trio2.phy: ASCII text data/altree-1.3.1/test/paml/tree_building_using_phyML/run_phyML: POSIX shell script, ASCII text executable data/altree-1.3.1/test/paml/tree_building_using_phyML/trio2.phy_phyml_tree.txt: ASCII text, with very long lines data/altree-1.3.1/test/paml/unrooted_present/localisation/rub: ASCII text, with very long lines data/altree-1.3.1/test/paml/unrooted_present/localisation/trio2.loc: ASCII text data/altree-1.3.1/test/paml/unrooted_present/localisation/et_trio2.phy: ASCII text data/altree-1.3.1/test/paml/unrooted_present/localisation/nb_cas_controls.txt: ASCII text data/altree-1.3.1/test/paml/unrooted_present/localisation/baseml.ctl: ASCII text data/altree-1.3.1/test/paml/unrooted_present/localisation/mlb: ASCII text, with very long lines data/altree-1.3.1/test/paml/unrooted_present/localisation/lnf: ASCII text data/altree-1.3.1/test/paml/unrooted_present/localisation/trio2.phy: ASCII text data/altree-1.3.1/test/paml/unrooted_present/localisation/rst1: very short file (no magic) data/altree-1.3.1/test/paml/unrooted_present/localisation/run-prog: POSIX shell script, ASCII text executable data/altree-1.3.1/test/paml/unrooted_present/localisation/trio2.phy_phyml_tree.txt: ASCII text, with very long lines data/altree-1.3.1/test/paml/unrooted_present/localisation/2base.t: ASCII text data/altree-1.3.1/test/paml/unrooted_present/localisation/rst: ASCII text, with very long lines data/altree-1.3.1/test/paml/unrooted_present/association/rub: ASCII text, with very long lines data/altree-1.3.1/test/paml/unrooted_present/association/run_altree: POSIX shell script, ASCII text executable data/altree-1.3.1/test/paml/unrooted_present/association/baseml.ctl: ASCII text data/altree-1.3.1/test/paml/unrooted_present/association/1_trio_ML.asso: ASCII text data/altree-1.3.1/test/paml/unrooted_present/association/mlb: ASCII text, with very long lines data/altree-1.3.1/test/paml/unrooted_present/association/lnf: ASCII text data/altree-1.3.1/test/paml/unrooted_present/association/trio2.phy: ASCII text data/altree-1.3.1/test/paml/unrooted_present/association/rst1: very short file (no magic) data/altree-1.3.1/test/paml/unrooted_present/association/nb_cas_control.txt: ASCII text data/altree-1.3.1/test/paml/unrooted_present/association/trio2.phy_phyml_tree.txt: ASCII text, with very long lines data/altree-1.3.1/test/paml/unrooted_present/association/2base.t: ASCII text data/altree-1.3.1/test/paml/unrooted_present/association/rst: ASCII text, with very long lines data/altree-1.3.1/test/paml/unrooted_absent/association/rub: ASCII text, with very long lines data/altree-1.3.1/test/paml/unrooted_absent/association/run_altree: POSIX shell script, ASCII text executable data/altree-1.3.1/test/paml/unrooted_absent/association/baseml.ctl: ASCII text data/altree-1.3.1/test/paml/unrooted_absent/association/1_trio_ML.asso: ASCII text data/altree-1.3.1/test/paml/unrooted_absent/association/mlb: ASCII text, with very long lines data/altree-1.3.1/test/paml/unrooted_absent/association/lnf: ASCII text data/altree-1.3.1/test/paml/unrooted_absent/association/trio2.phy: ASCII text data/altree-1.3.1/test/paml/unrooted_absent/association/rst1: very short file (no magic) data/altree-1.3.1/test/paml/unrooted_absent/association/nb_cas_control.txt: ASCII text data/altree-1.3.1/test/paml/unrooted_absent/association/trio2.phy_phyml_tree.txt: ASCII text, with very long lines data/altree-1.3.1/test/paml/unrooted_absent/association/2base.t: ASCII text data/altree-1.3.1/test/paml/unrooted_absent/association/rst: ASCII text, with very long lines data/altree-1.3.1/test/phylip/ancestor_absent/association/trio.phy: ASCII text data/altree-1.3.1/test/phylip/ancestor_absent/association/nb_cas_controls.txt: ASCII text data/altree-1.3.1/test/phylip/ancestor_absent/association/run_altree: POSIX shell script, ASCII text executable data/altree-1.3.1/test/phylip/ancestor_absent/association/1_trio_phy.asso: ASCII text data/altree-1.3.1/test/phylip/ancestor_absent/association/outtree: ASCII text data/altree-1.3.1/test/phylip/ancestor_absent/association/ancestors: ASCII text data/altree-1.3.1/test/phylip/ancestor_absent/association/outfile: ASCII text data/altree-1.3.1/test/phylip/outgroup_absent/association/trio.phy: ASCII text data/altree-1.3.1/test/phylip/outgroup_absent/association/nb_cas_controls.txt: ASCII text data/altree-1.3.1/test/phylip/outgroup_absent/association/run_altree: POSIX shell script, ASCII text executable data/altree-1.3.1/test/phylip/outgroup_absent/association/1_trio_phy.asso: ASCII text data/altree-1.3.1/test/phylip/outgroup_absent/association/outtree: ASCII text data/altree-1.3.1/test/phylip/outgroup_absent/association/outfile: ASCII text data/altree-1.3.1/test/phylip/outgroup_present/association/trio.phy: ASCII text data/altree-1.3.1/test/phylip/outgroup_present/association/nb_cas_controls.txt: ASCII text data/altree-1.3.1/test/phylip/outgroup_present/association/run_altree: POSIX shell script, ASCII text executable data/altree-1.3.1/test/phylip/outgroup_present/association/1_trio_phy.asso: ASCII text data/altree-1.3.1/test/phylip/outgroup_present/association/outtree: ASCII text data/altree-1.3.1/test/phylip/outgroup_present/association/outfile: ASCII text data/altree-1.3.1/test/phylip/ancestor_present/association/trio.phy: ASCII text data/altree-1.3.1/test/phylip/ancestor_present/association/nb_cas_controls.txt: ASCII text data/altree-1.3.1/test/phylip/ancestor_present/association/run_altree: POSIX shell script, ASCII text executable data/altree-1.3.1/test/phylip/ancestor_present/association/1_trio_phy.asso: ASCII text data/altree-1.3.1/test/phylip/ancestor_present/association/outtree: ASCII text data/altree-1.3.1/test/phylip/ancestor_present/association/ancestors: ASCII text data/altree-1.3.1/test/phylip/ancestor_present/association/outfile: ASCII text data/altree-1.3.1/.gitignore: ASCII text data/altree-1.3.1/MANIFEST: ASCII text data/altree-1.3.1/bash_completion: ASCII text data/altree-1.3.1/META.json: JSON data data/altree-1.3.1/Documentation/Makefile: ASCII text data/altree-1.3.1/Documentation/stage.bib: ISO-8859 text, with very long lines data/altree-1.3.1/Documentation/fig/overview.fig: FIG image text, version 3.2, ASCII text data/altree-1.3.1/Documentation/fig/anc_outg.fig: FIG image text, version 3.2, ASCII text data/altree-1.3.1/Documentation/fig/create_file_paup.fig: FIG image text, version 3.2, ASCII text data/altree-1.3.1/Documentation/fig/altree-q.fig: FIG image text, version 3.2, ASCII text data/altree-1.3.1/Documentation/fig/option_b.subfig: ASCII text data/altree-1.3.1/Documentation/fig/localisation_paup.fig: FIG image text, version 3.2, ASCII text data/altree-1.3.1/Documentation/fig/association_phylip.fig: FIG image text, version 3.2, ASCII text data/altree-1.3.1/Documentation/fig/association_paml.fig: FIG image text, version 3.2, ASCII text data/altree-1.3.1/Documentation/fig/association_paup.fig: FIG image text, version 3.2, ASCII text data/altree-1.3.1/Documentation/fig/create_file_phy.fig: FIG image text, version 3.2, ASCII text data/altree-1.3.1/Documentation/fig/localisation_paml.fig: FIG image text, version 3.2, ASCII text data/altree-1.3.1/Documentation/fig/option_b.fig: FIG image text, version 3.2, ASCII text data/altree-1.3.1/Documentation/manual.tex: LaTeX 2e document, ISO-8859 text, with very long lines data/altree-1.3.1/Makefile.PL: ASCII text data/altree-1.3.1/CUtils/CUtils.xs: C source, ISO-8859 text data/altree-1.3.1/CUtils/const-c.inc: C source, ASCII 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data/altree-1.3.1/.pc/figlatex.patch/Documentation/manual.tex: LaTeX 2e document, ISO-8859 text, with very long lines