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data/ariba-2.14.6+ds/ariba/tasks/refquery.py: Python script, ASCII text executable data/ariba-2.14.6+ds/ariba/tasks/test.py: Python script, ASCII text executable data/ariba-2.14.6+ds/ariba/tasks/pubmlstget.py: Python script, ASCII text executable data/ariba-2.14.6+ds/ariba/tasks/pubmlstspecies.py: Python script, ASCII text executable data/ariba-2.14.6+ds/ariba/tasks/__init__.py: Python script, ASCII text executable data/ariba-2.14.6+ds/ariba/tasks/getref.py: Python script, ASCII text executable data/ariba-2.14.6+ds/ariba/tasks/aln2meta.py: Python script, ASCII text executable data/ariba-2.14.6+ds/ariba/ext/minimap_ariba.cpp: C source, ASCII text data/ariba-2.14.6+ds/ariba/ext/vcfcall_ariba.cpp: C source, ASCII text data/ariba-2.14.6+ds/ariba/ext/fml-asm_ariba.cpp: C++ source, ASCII text data/ariba-2.14.6+ds/ariba/read_store.py: Python script, ASCII text executable data/ariba-2.14.6+ds/ariba/pubmlst_getter.py: Python script, ASCII text executable data/ariba-2.14.6+ds/ariba/sequence_variant.py: Python script, ASCII text executable data/ariba-2.14.6+ds/ariba/report.py: Python script, UTF-8 Unicode text executable data/ariba-2.14.6+ds/ariba/histogram.py: Python script, ASCII text executable data/ariba-2.14.6+ds/ariba/summary_sample.py: Python script, ASCII text executable data/ariba-2.14.6+ds/ariba/mic_plotter.py: Python script, ASCII text executable data/ariba-2.14.6+ds/ariba/faidx.py: Python script, ASCII text executable data/ariba-2.14.6+ds/ariba/common.py: Python script, ASCII text executable data/ariba-2.14.6+ds/ariba/cdhit.py: Python script, ASCII text executable data/ariba-2.14.6+ds/ariba/ref_genes_getter.py: Python script, ASCII text executable, with very long lines data/ariba-2.14.6+ds/ariba/mapping.py: Python script, ASCII text executable data/ariba-2.14.6+ds/ariba/aln_to_metadata.py: Python script, ASCII text executable data/ariba-2.14.6+ds/ariba/cluster.py: Python script, ASCII text executable data/ariba-2.14.6+ds/ariba/ref_preparer.py: Python script, ASCII text executable data/ariba-2.14.6+ds/ariba/clusters.py: Python script, ASCII text executable data/ariba-2.14.6+ds/ariba/versions.py: Python script, ASCII text executable data/ariba-2.14.6+ds/ariba/sequence_metadata.py: Python script, ASCII text executable data/ariba-2.14.6+ds/ariba/__init__.py: Python script, ASCII text executable data/ariba-2.14.6+ds/ariba/tb_data/panel.20190102.json: ASCII text data/ariba-2.14.6+ds/ariba/tb_data/panel.20181221.txt: ASCII text, with very long lines data/ariba-2.14.6+ds/ariba/tb_data/panel.20181115.txt: ASCII text, with very long lines data/ariba-2.14.6+ds/ariba/tb_data/NC_000962.3.gb: ASCII text data/ariba-2.14.6+ds/ariba/tb_data/panel.20190102.txt: ASCII text, with very long lines data/ariba-2.14.6+ds/ariba/tb_data/panel.20181221.json: ASCII text data/ariba-2.14.6+ds/ariba/tb_data/panel.20181115.json: ASCII text data/ariba-2.14.6+ds/ariba/tb_data/NC_000962.3.fa.gz: gzip compressed data, was "NC_000962.3.fa", last modified: Thu Nov 15 15:36:22 2018, max compression, from Unix, original size modulo 2^32 4474568 data/ariba-2.14.6+ds/ariba/reference_data.py: Python script, ASCII text executable data/ariba-2.14.6+ds/ariba/assembly_variants.py: Python script, UTF-8 Unicode text executable data/ariba-2.14.6+ds/ariba/assembly.py: Python script, ASCII text executable data/ariba-2.14.6+ds/scripts/ariba: Python script, ASCII text executable, with very long lines data/ariba-2.14.6+ds/MANIFEST.in: ASCII text data/ariba-2.14.6+ds/README.md: UTF-8 Unicode text, with very long lines data/ariba-2.14.6+ds/Dockerfile: ASCII text data/ariba-2.14.6+ds/.gitignore: ASCII text data/ariba-2.14.6+ds/_config.yml: ASCII text, with no line terminators data/ariba-2.14.6+ds/AUTHORS: ASCII text data/ariba-2.14.6+ds/.travis.yml: ASCII text data/ariba-2.14.6+ds/debian/README.package: ASCII text data/ariba-2.14.6+ds/debian/ariba.1.adoc: ASCII text data/ariba-2.14.6+ds/debian/ariba.manpages: ASCII text, with no line terminators data/ariba-2.14.6+ds/debian/changelog: UTF-8 Unicode text data/ariba-2.14.6+ds/debian/control: ASCII text data/ariba-2.14.6+ds/debian/copyright: UTF-8 Unicode text data/ariba-2.14.6+ds/debian/extra-man-info.txt: ASCII text data/ariba-2.14.6+ds/debian/make_man: Perl script text executable data/ariba-2.14.6+ds/debian/patches/add-testdata.patch: unified diff output, ASCII text data/ariba-2.14.6+ds/debian/patches/disable-tests-with-internet-access.patch: unified diff output, ASCII text data/ariba-2.14.6+ds/debian/patches/run-debian-spades-wrapper.patch: unified diff output, ASCII text data/ariba-2.14.6+ds/debian/patches/series: ASCII text data/ariba-2.14.6+ds/debian/patches/support-pymummer-0.11.patch: unified diff output, ASCII text data/ariba-2.14.6+ds/debian/patches/use_bwa_compatible_fermi-lite.patch: unified diff output, ASCII text data/ariba-2.14.6+ds/debian/patches/use_debian_packaged_libs_for_extension.patch: unified diff output, ASCII text data/ariba-2.14.6+ds/debian/rules: a /usr/bin/make -f script, ASCII text executable data/ariba-2.14.6+ds/debian/source/format: ASCII text data/ariba-2.14.6+ds/debian/tests/control: ASCII text data/ariba-2.14.6+ds/debian/tests/test-example: POSIX shell script, ASCII text executable data/ariba-2.14.6+ds/debian/upstream/metadata: ASCII text data/ariba-2.14.6+ds/debian/watch: ASCII text data/ariba-2.14.6+ds/.pc/.version: ASCII text data/ariba-2.14.6+ds/.pc/.quilt_patches: ASCII text data/ariba-2.14.6+ds/.pc/.quilt_series: ASCII text data/ariba-2.14.6+ds/.pc/applied-patches: ASCII text data/ariba-2.14.6+ds/.pc/use_debian_packaged_libs_for_extension.patch/setup.py: Python script, ASCII text executable data/ariba-2.14.6+ds/.pc/use_bwa_compatible_fermi-lite.patch/ariba/ext/fml-asm_ariba.cpp: C++ source, ASCII text data/ariba-2.14.6+ds/.pc/add-testdata.patch/setup.py: Python script, ASCII text executable data/ariba-2.14.6+ds/.pc/disable-tests-with-internet-access.patch/ariba/tests/ncbi_getter_test.py: Python script, ASCII text executable data/ariba-2.14.6+ds/.pc/support-pymummer-0.11.patch/ariba/tests/assembly_variants_test.py: Python script, ASCII text executable data/ariba-2.14.6+ds/.pc/support-pymummer-0.11.patch/ariba/tests/data/assembly_variants_test_get_variants_variants_only.snps: ASCII text data/ariba-2.14.6+ds/.pc/support-pymummer-0.11.patch/ariba/tests/data/assembly_variants_test_get_variants_presence_absence.snps: ASCII text data/ariba-2.14.6+ds/.pc/run-debian-spades-wrapper.patch/ariba/assembly.py: Python script, ASCII text executable data/ariba-2.14.6+ds/setup.py: Python script, ASCII text executable