data/bbmap-38.87+dfsg/addadapters.sh: Bourne-Again shell script, ASCII text executable data/bbmap-38.87+dfsg/addssu.sh: Bourne-Again shell script, ASCII text executable data/bbmap-38.87+dfsg/adjusthomopolymers.sh: Bourne-Again shell script, ASCII text executable data/bbmap-38.87+dfsg/alltoall.sh: Bourne-Again shell script, ASCII text executable data/bbmap-38.87+dfsg/analyzeaccession.sh: Bourne-Again shell script, ASCII text executable data/bbmap-38.87+dfsg/analyzegenes.sh: Bourne-Again shell script, ASCII text executable data/bbmap-38.87+dfsg/analyzesketchresults.sh: Bourne-Again shell script, ASCII text executable data/bbmap-38.87+dfsg/applyvariants.sh: Bourne-Again shell script, ASCII text executable data/bbmap-38.87+dfsg/a_sample_mt.sh: Bourne-Again shell script, ASCII text executable data/bbmap-38.87+dfsg/bbcms.sh: Bourne-Again shell script, ASCII text executable data/bbmap-38.87+dfsg/bbcountunique.sh: Bourne-Again shell script, ASCII text executable data/bbmap-38.87+dfsg/bbduk.sh: Bourne-Again shell script, ASCII text executable data/bbmap-38.87+dfsg/bbest.sh: Bourne-Again shell script, ASCII text executable data/bbmap-38.87+dfsg/bbfakereads.sh: Bourne-Again shell script, ASCII text executable data/bbmap-38.87+dfsg/bbmap.sh: Bourne-Again shell script, ASCII text executable data/bbmap-38.87+dfsg/bbmapskimmer.sh: Bourne-Again shell script, ASCII text executable data/bbmap-38.87+dfsg/bbmask.sh: Bourne-Again shell script, ASCII text executable data/bbmap-38.87+dfsg/bbmerge-auto.sh: Bourne-Again shell script, ASCII text executable data/bbmap-38.87+dfsg/bbmerge.sh: Bourne-Again shell script, ASCII text executable data/bbmap-38.87+dfsg/bbnorm.sh: Bourne-Again shell script, ASCII text executable data/bbmap-38.87+dfsg/bbrealign.sh: Bourne-Again shell script, ASCII text executable data/bbmap-38.87+dfsg/bbrename.sh: Bourne-Again shell script, ASCII text executable data/bbmap-38.87+dfsg/bbsketch.sh: Bourne-Again shell script, ASCII text executable data/bbmap-38.87+dfsg/bbsplit.sh: Bourne-Again shell script, ASCII text executable data/bbmap-38.87+dfsg/bbsplitpairs.sh: Bourne-Again shell script, ASCII text executable data/bbmap-38.87+dfsg/bbstats.sh: Bourne-Again shell script, ASCII text executable data/bbmap-38.87+dfsg/bbversion.sh: Bourne-Again shell script, ASCII text executable data/bbmap-38.87+dfsg/bbwrap.sh: Bourne-Again shell script, ASCII text executable data/bbmap-38.87+dfsg/bitbucket-pipelines.yml: ASCII text data/bbmap-38.87+dfsg/bloomfilter.sh: Bourne-Again shell script, ASCII text executable data/bbmap-38.87+dfsg/build.xml: exported SGML document, ASCII text data/bbmap-38.87+dfsg/calcmem.sh: Bourne-Again shell script, ASCII text executable data/bbmap-38.87+dfsg/calctruequality.sh: Bourne-Again shell script, ASCII text executable data/bbmap-38.87+dfsg/callgenes.sh: Bourne-Again shell script, ASCII text executable data/bbmap-38.87+dfsg/callpeaks.sh: Bourne-Again shell script, ASCII text executable data/bbmap-38.87+dfsg/callvariants.sh: Bourne-Again shell script, ASCII text executable data/bbmap-38.87+dfsg/callvariants2.sh: Bourne-Again shell script, ASCII text executable data/bbmap-38.87+dfsg/clumpify.sh: Bourne-Again shell script, ASCII text executable data/bbmap-38.87+dfsg/commonkmers.sh: Bourne-Again shell script, ASCII text executable data/bbmap-38.87+dfsg/comparegff.sh: Bourne-Again shell script, ASCII text executable data/bbmap-38.87+dfsg/comparesketch.sh: Bourne-Again shell script, ASCII text executable data/bbmap-38.87+dfsg/comparessu.sh: Bourne-Again shell script, ASCII text executable data/bbmap-38.87+dfsg/comparevcf.sh: Bourne-Again shell script, ASCII text executable data/bbmap-38.87+dfsg/config/cluster16s.txt: ASCII text data/bbmap-38.87+dfsg/config/filter16s.txt: ASCII text data/bbmap-38.87+dfsg/config/histograms.txt: ASCII text data/bbmap-38.87+dfsg/config/recalibrate.txt: ASCII text data/bbmap-38.87+dfsg/config/rnaseq.txt: ASCII text data/bbmap-38.87+dfsg/config/trimadapters.txt: ASCII text data/bbmap-38.87+dfsg/consect.sh: Bourne-Again shell script, ASCII text executable data/bbmap-38.87+dfsg/consensus.sh: Bourne-Again shell script, ASCII text executable data/bbmap-38.87+dfsg/countbarcodes.sh: Bourne-Again shell script, ASCII text executable data/bbmap-38.87+dfsg/countgc.sh: Bourne-Again shell script, ASCII text executable data/bbmap-38.87+dfsg/countsharedlines.sh: Bourne-Again shell script, ASCII text executable data/bbmap-38.87+dfsg/crossblock.sh: Bourne-Again shell script, ASCII text executable data/bbmap-38.87+dfsg/crosscontaminate.sh: Bourne-Again shell script, ASCII text executable data/bbmap-38.87+dfsg/current/align2/AbstractIndex.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/align2/AbstractMapper.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/align2/AbstractMapThread.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/align2/BandedAligner.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/align2/BandedAlignerConcrete.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/align2/BandedAlignerJNI.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/align2/BBIndex.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/align2/BBIndex5.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/align2/BBIndexAcc.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/align2/BBIndexPacBio.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/align2/BBIndexPacBioSkimmer.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/align2/BBMap.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/align2/BBMap5.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/align2/BBMapAcc.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/align2/BBMapPacBio.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/align2/BBMapPacBioSkimmer.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/align2/BBMapThread.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/align2/BBMapThread5.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/align2/BBMapThreadAcc.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/align2/BBMapThreadPacBio.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/align2/BBMapThreadPacBioSkimmer.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/align2/BBSplitter.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/align2/BBWrap.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/align2/Blacklist.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/align2/Block.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/align2/ChromLoadThread.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/align2/CompareSamFiles.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/align2/CompressString.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/align2/GapTools.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/align2/GradeSamFile.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/align2/Index.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/align2/IndexMaker4.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/align2/IndexMaker5.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/align2/KeyRing.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/align2/MakeQualityHistogram.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/align2/MakeRocCurve.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/align2/MSA.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/align2/MultiStateAligner10ts.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/align2/MultiStateAligner11ts.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/align2/MultiStateAligner11tsJNI.java: Perl5 module source, ASCII text, with very long lines, with CRLF line terminators data/bbmap-38.87+dfsg/current/align2/MultiStateAligner9Flat.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/align2/MultiStateAligner9PacBio.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/align2/MultiStateAligner9ts.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/align2/MultiStateAligner9XFlat.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/align2/NeedlemanWunsch.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/align2/PackedHeap.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/align2/Pointer.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/align2/PrintTime.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/align2/Quad.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/align2/Quad64.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/align2/Quad64Heap.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/align2/QuadHeap.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/align2/QualityTools.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/align2/RandomReads3.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/align2/ReformatBatchOutput.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/align2/ReformatBatchOutput2.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/align2/RefToIndex.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/align2/Solver.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/align2/SplitMappedReads.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/align2/TranslateColorspaceRead.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/aligner/Aligner.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/aligner/Alignment.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/aligner/AlignmentResult.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/aligner/AllToAll.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/aligner/FlatAligner.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/aligner/FlatAligner2.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/aligner/MultiStateAligner9PacBioAdapter.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/aligner/MultiStateAligner9PacBioAdapter2.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/aligner/MultiStateAligner9PacBioAdapter3.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/aligner/MultiStateAligner9PacBioAdapter_WithBarriers.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/aligner/SingleStateAlignerFlat.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/aligner/SingleStateAlignerFlat2.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/aligner/SingleStateAlignerFlat2Amino.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/aligner/SingleStateAlignerFlat2_1D.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/aligner/SingleStateAlignerFlat3.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/aligner/SingleStateAlignerFlatFloat.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/aligner/SingleStateAlignerPacBioAdapter.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/assemble/AbstractBuildThread.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/assemble/AbstractExploreThread.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/assemble/AbstractProcessContigThread.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/assemble/AbstractRemoveThread.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/assemble/AbstractShaveThread.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/assemble/BubblePopper.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/assemble/Contig.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/assemble/Edge.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/assemble/ErrorTracker.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/assemble/KmerCompressor.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/assemble/Postfilter.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/assemble/Rollback.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/assemble/ShaveObject.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/assemble/Shaver.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/assemble/Shaver1.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/assemble/Shaver2.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/assemble/TadPipe.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/assemble/Tadpole.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/assemble/Tadpole1.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/assemble/Tadpole2.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/assemble/TadpoleWrapper.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/bloom/BloomFilter.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/bloom/BloomFilterCorrector.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/bloom/BloomFilterCorrectorWrapper.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/bloom/BloomFilterWrapper.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/bloom/ErrorCorrect.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/bloom/KCountArray.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/bloom/KCountArray2.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/bloom/KCountArray3.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/bloom/KCountArray4.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/bloom/KCountArray4MT.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/bloom/KCountArray5MT.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/bloom/KCountArray6MT.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/bloom/KCountArray7MT.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/bloom/KCountArray7MTA.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/bloom/KCountArray8MT.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/bloom/KmerCount3.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/bloom/KmerCount4.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/bloom/KmerCount5.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/bloom/KmerCount6.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/bloom/KmerCount6MT.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/bloom/KmerCount7MT.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/bloom/KmerCount7MTA.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/bloom/KmerCountAbstract.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/bloom/LargeKmerCount.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/bloom/LargeKmerCount2.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/bloom/TestLargeKmer.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/cardinality/BBLog.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/cardinality/BBLog_simple.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/cardinality/CardinalityTracker.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/cardinality/LogLog.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/cardinality/LogLog16.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/cardinality/LogLog2.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/cardinality/LogLog8.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/cardinality/LogLog8_simple.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/cardinality/LogLogWrapper.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/cardinality/LogLog_old.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/cardinality/MultiLogLog.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/clump/Clump.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/clump/Clumpify.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/clump/ClumpList.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/clump/ClumpTools.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/clump/KmerComparator.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/clump/KmerComparator2.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/clump/KmerComparatorX.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/clump/KmerComparatorY.java: Perl5 module source, 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data/bbmap-38.87+dfsg/current/jgi/DecontaminateByNormalization.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/jgi/Dedupe.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/jgi/Dedupe2.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/jgi/DedupeByMapping.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/jgi/DedupeProtein.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/jgi/DemuxByName.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/jgi/DemuxByName2.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/jgi/Difference.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/jgi/FakeReads.java: Perl5 module source, ASCII text, with CRLF, LF line terminators data/bbmap-38.87+dfsg/current/jgi/FilterByCoverage.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/jgi/FilterBySequence.java: Perl5 module source, ASCII text, with CRLF, LF line terminators data/bbmap-38.87+dfsg/current/jgi/FilterReadsWithSubs.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/jgi/FindHiCJunctions.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/jgi/FindPrimers.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/jgi/FindPrimers_old.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/jgi/FindString.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/jgi/FungalRelease.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/jgi/FuseSequence.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/jgi/GatherKapaStats.java: C source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/jgi/GetReads.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/jgi/GradeMergedReads.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/jgi/GreedyBarCodeFinder.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/jgi/IdentityMatrix.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/jgi/Info.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/jgi/KeepBestCopy.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/jgi/KmerCountExact.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/jgi/KmerCountMulti.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/jgi/KmerCoverage.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/jgi/KmerFilterSetMaker.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/jgi/KmerNormalize.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/jgi/KmerSample.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/jgi/MakeChimeras.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/jgi/MakeContaminatedGenomes.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/jgi/MakeLengthHistogram.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/jgi/MakePolymers.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/jgi/MergeBarcodes.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/jgi/MergeSam.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/jgi/MutateGenome.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/jgi/MutateGenome2.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/jgi/Orf.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/jgi/PartitionReads.java: Perl5 module source, ASCII text, with CRLF, LF line terminators data/bbmap-38.87+dfsg/current/jgi/PhylipToFasta.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/jgi/RandomGenome.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/jgi/ReadKmerDepthDistribution.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/jgi/RedirectTest.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/jgi/ReformatReads.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/jgi/RemapQuality.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/jgi/RemoveBadBarcodes.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/jgi/RenameReads.java: Perl5 module source, ASCII text, with CRLF, LF line terminators data/bbmap-38.87+dfsg/current/jgi/ReplaceHeaders.java: Perl5 module source, ASCII text, with CRLF, LF line terminators data/bbmap-38.87+dfsg/current/jgi/RepresentativeSet.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/jgi/RQCFilter2.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/jgi/RQCFilterStats.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/jgi/SamToEst.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/jgi/Seal.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/jgi/Shred.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/jgi/SmallKmerFrequency.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/jgi/SplitNexteraLMP.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/jgi/SplitPairsAndSingles.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/jgi/SplitSam4Way.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/jgi/SplitSam6Way.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/jgi/SplitSamFile.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/jgi/StringCount.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/jgi/SynthMDA.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/jgi/TestFilesystem.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/jgi/TestFormat.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/jgi/TetramerFrequencies.java: Perl5 module source, ASCII text data/bbmap-38.87+dfsg/current/jgi/TranslateSixFrames.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/jgi/UnicodeToAscii.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/jgi/Unzip.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/json/JsonLiteral.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/json/JsonObject.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/json/JsonParser.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/kmer/AbstractKmerTable.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/kmer/AbstractKmerTableSet.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/kmer/AtomicShortArray.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/kmer/DumpThread.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/kmer/HashArray.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/kmer/HashArray1D.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/kmer/HashArray2D.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/kmer/HashArrayHybrid.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/kmer/HashArrayHybridFast.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/kmer/HashBuffer.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/kmer/HashForest.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/kmer/HistogramMaker.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/kmer/KmerBuffer.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/kmer/KmerLink.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/kmer/KmerNode.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/kmer/KmerNode1D.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/kmer/KmerNode2D.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/kmer/KmerTable.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/kmer/KmerTableSet.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/kmer/OwnershipThread.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/kmer/ScheduleMaker.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/kmer/TableLoaderLockFree.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/kmer/TableReader.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/ml/ProcessBBMergeHeaders.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/pacbio/CalcCoverageFromSites.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/pacbio/GenerateMultiChrom.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/pacbio/MakePacBioScript.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/pacbio/MergeFastaContigs.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/pacbio/MergeReadsAndGenome.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/pacbio/PartitionFastaFile.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/pacbio/PartitionReads.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/pacbio/ProcessStackedSitesNormalized.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/pacbio/RemoveAdapters2.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/pacbio/RemoveAdapters3.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/pacbio/SiteR.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/pacbio/SortSites.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/pacbio/SplitOffPerfectContigs.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/pacbio/StackSites.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/pacbio/StackSites2.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/prok/AnalyzeGenes.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/prok/CallGenes.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/prok/Feature.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/prok/FetchProks.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/prok/FilterSilva.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/prok/FrameStats.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/prok/GeneCaller.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/prok/GeneModel.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/prok/GeneModelParser.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/prok/MergeRibo.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/prok/MergeRibo_Fast.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/prok/Orf.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/prok/PGMTools.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/prok/ProkObject.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/prok/RiboMaker.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/prok/ScafData.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/prok/ScoreTracker.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/prok/SplitRibo.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/prok/StatsContainer.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/server/PercentEncoding.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/server/ServerTools.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/server/SimpleHttpServer.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/shared/Colors.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/shared/KillSwitch.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/shared/MetadataWriter.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/shared/Parser.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/shared/PreParser.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/shared/Primes.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/shared/ReadStats.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/shared/Shared.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/shared/Timer.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/shared/Tools.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/shared/TrimRead.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/sketch/AddSSU.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/sketch/AlignmentJob.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/sketch/AlignmentThreadPool.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/sketch/AnalyzeSketchResults.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/sketch/Blacklist.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/sketch/BlacklistMaker.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/sketch/BlacklistMaker2.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/sketch/CompareBuffer.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/sketch/CompareSketch.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/sketch/CompareSSU.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/sketch/Comparison.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/sketch/DisplayParams.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/sketch/GlocalAligner.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/sketch/InvertKey.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/sketch/KmerLimit.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/sketch/KmerLimit2.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/sketch/MergeSketch.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/sketch/Record.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/sketch/RecordSet.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/sketch/ResultLineParser.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/sketch/SendSketch.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/sketch/Sketch.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/sketch/SketchHeap.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/sketch/SketchIdComparator.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/sketch/SketchIndex.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/sketch/SketchMaker.java: Perl5 module source, ASCII text data/bbmap-38.87+dfsg/current/sketch/SketchMakerMini.java: Perl5 module source, ASCII text data/bbmap-38.87+dfsg/current/sketch/SketchObject.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/sketch/SketchResults.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/sketch/SketchSearcher.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/sketch/SketchTool.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/sketch/SSUMap.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/sketch/SubSketch.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/sketch/SummarizeSketchStats.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/sketch/Whitelist.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/sort/ContigLengthComparator.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/sort/MergeSorted.java: Perl5 module source, ASCII text, with CRLF, LF line terminators data/bbmap-38.87+dfsg/current/sort/ReadComparator.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/sort/ReadComparatorFlowcell.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/sort/ReadComparatorID.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/sort/ReadComparatorList.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/sort/ReadComparatorMapping.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/sort/ReadComparatorName.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/sort/ReadComparatorPosition.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/sort/ReadComparatorRandom.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/sort/ReadComparatorTaxa.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/sort/ReadComparatorTopological.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/sort/ReadErrorComparator.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/sort/ReadLengthComparator.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/sort/ReadQualityComparator.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/sort/Shuffle.java: Perl5 module source, ASCII text, with CRLF, LF line terminators data/bbmap-38.87+dfsg/current/sort/Shuffle2.java: Perl5 module source, ASCII text, with CRLF, LF line terminators data/bbmap-38.87+dfsg/current/sort/SortByName.java: Perl5 module source, ASCII text, with CRLF, LF line terminators data/bbmap-38.87+dfsg/current/sort/SortReadsByID.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/stream/ArrayListSet.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/stream/BufferedMultiCros.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/stream/ConcurrentCollectionReadInputStream.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/stream/ConcurrentDepot.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/stream/ConcurrentGenericReadInputStream.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/stream/ConcurrentGenericReadOutputStream.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/stream/ConcurrentLegacyReadInputStream.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/stream/ConcurrentReadInputStream.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/stream/ConcurrentReadInputStreamD.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/stream/ConcurrentReadListDepot.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/stream/ConcurrentReadOutputStream.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/stream/ConcurrentReadOutputStreamD.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/stream/ConcurrentReadStreamInterface.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/stream/CrisContainer.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/stream/CrisWrapper.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/stream/DualCris.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/stream/EmblReadInputStream.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/stream/FastaQualReadInputStream.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/stream/FastaReadInputStream.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/stream/FastaShredInputStream.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/stream/FASTQ.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/stream/FastqReadInputStream.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/stream/GbkReadInputStream.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/stream/Header.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/stream/HeaderInputStream.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/stream/MDWalker.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/stream/MultiCros.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/stream/MultiCros2.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/stream/MultiCros3.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/stream/NullOutputStream.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/stream/OnelineReadInputStream.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/stream/RandomReadInputStream3.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/stream/Read.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/stream/ReadInputStream.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/stream/ReadStreamByteWriter.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/stream/ReadStreamWriter.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/stream/RTextInputStream.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/stream/SamHeader.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/stream/SamLine.java: Perl5 module source, ASCII text, with very long lines, with CRLF line terminators data/bbmap-38.87+dfsg/current/stream/SamLineStreamer.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/stream/SamReadInputStream.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/stream/SamReadStreamer.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/stream/SamStreamer.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/stream/SamStreamerMF.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/stream/SamStreamerWrapper.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/stream/ScaffoldCoordinates.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/stream/ScarfReadInputStream.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/stream/SequentialReadInputStream.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/stream/SiteScore.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/stream/SiteScoreR.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/structures/AbstractBitSet.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/structures/AbstractIntHashMap.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/structures/AtomicBitSet.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/structures/ByteBuilder.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/structures/CoverageArray.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/structures/CoverageArray2.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/structures/CoverageArray3.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/structures/CoverageArray3A.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/structures/DoubleList.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/structures/EntropyTracker.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/structures/FloatList.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/structures/Heap.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/structures/IntHashMap.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/structures/IntHashMapBinary.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/structures/IntHashSet.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/structures/IntHashSetList.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/structures/IntList.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/structures/IntList2.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/structures/IntList3.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/structures/IntListCompressor.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/structures/IntLongHashMap.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/structures/IntMap.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/structures/ListNum.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/structures/LongHashMap.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/structures/LongHashSet.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/structures/LongHeap.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/structures/LongHeapMap.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/structures/LongHeapSet.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/structures/LongHeapSetInterface.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/structures/LongList.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/structures/LongLongHashMap.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/structures/LongM.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/structures/LongPair.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/structures/MultiBitSet.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/structures/PolymerTracker.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/structures/Quantizer.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/structures/Range.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/structures/RawBitSet.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/structures/StringNum.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/structures/StringPair.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/structures/SuperLongList.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/tax/AccessionToTaxid.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/tax/AccessionToTaxid_old.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/tax/AnalyzeAccession.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/tax/AnalyzeAccession_ST.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/tax/ExplodeTree.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/tax/FilterByTaxa.java: Perl5 module source, ASCII text, with CRLF, LF line terminators data/bbmap-38.87+dfsg/current/tax/FindAncestor.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/tax/GiToTaxid.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/tax/IDNode.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/tax/IDTree.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/tax/ImgRecord.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/tax/ImgRecord2.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/tax/PrintTaxonomy.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/tax/Query.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/tax/RenameGiToTaxid.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/tax/RenameIMG.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/tax/ShrinkAccession.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/tax/SplitByTaxa.java: Perl5 module source, ASCII text, with CRLF, LF line terminators data/bbmap-38.87+dfsg/current/tax/TaxApp.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/tax/TaxClient.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/tax/TaxFilter.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/tax/TaxNode.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/tax/TaxServer.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/tax/TaxSize.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/tax/TaxTree.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/template/Accumulator.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/template/A_Sample.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/template/A_Sample2.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/template/A_SampleBasic.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/template/A_SampleBasic2.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/template/A_SampleByteFile.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/template/A_SampleD.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/template/A_SampleMT.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/template/A_SampleSamStreamer.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/template/A_SampleSummary.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/template/A_Sample_Generator.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/template/A_Sample_Unpaired.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/template/BBTool_ST.java: Perl5 module source, ASCII text, with CRLF, LF line terminators data/bbmap-38.87+dfsg/current/template/DoWorker.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/template/ThreadPoolJob.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/template/ThreadWaiter.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/ukmer/AbstractKmerTableU.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/ukmer/DumpThreadU.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/ukmer/HashArrayU.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/ukmer/HashArrayU1D.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/ukmer/HashArrayU2D.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/ukmer/HashArrayUHybrid.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/ukmer/HashBufferU.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/ukmer/HashForestU.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/ukmer/HistogramMakerU.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/ukmer/Kmer.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/ukmer/KmerBufferU.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/ukmer/KmerNodeU.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/ukmer/KmerNodeU1D.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/ukmer/KmerNodeU2D.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/ukmer/KmerTableSetU.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/ukmer/OwnershipThread.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/var/ApplyVarsToReference.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/var/GenerateConsensusVariations.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/var/GenerateVarlets.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/var/GenerateVarlets2.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/var/GenerateVarlets3.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/var/StackVariations.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/var/StackVariations2.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/var/Variation.java: Perl5 module source, ASCII text, with CRLF line terminators data/bbmap-38.87+dfsg/current/var/Varlet.java: Perl5 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