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data/biojava4-live-4.2.12+dfsg/biojava-sequencing/src/test/resources/org/biojava/nbio/sequencing/io/fastq/wrapped-quality.fastq: ASCII text, with CRLF line terminators data/biojava4-live-4.2.12+dfsg/biojava-sequencing/src/test/resources/org/biojava/nbio/sequencing/io/fastq/sanger_faked.fastq: ASCII text data/biojava4-live-4.2.12+dfsg/biojava-sequencing/src/test/resources/org/biojava/nbio/sequencing/io/fastq/solexa_full_range_as_illumina.fastq: ASCII text data/biojava4-live-4.2.12+dfsg/biojava-sequencing/src/test/resources/org/biojava/nbio/sequencing/io/fastq/sanger-invalid-repeat-description.fastq: ASCII text, with CRLF line terminators data/biojava4-live-4.2.12+dfsg/biojava-sequencing/src/test/resources/org/biojava/nbio/sequencing/io/fastq/error_trunc_in_qual.fastq: ASCII text data/biojava4-live-4.2.12+dfsg/biojava-sequencing/src/test/resources/org/biojava/nbio/sequencing/io/fastq/evil_wrapping.fastq: ASCII text data/biojava4-live-4.2.12+dfsg/biojava-sequencing/src/test/resources/org/biojava/nbio/sequencing/io/fastq/illumina_full_range_original_illumina.fastq: ASCII text data/biojava4-live-4.2.12+dfsg/biojava-sequencing/src/test/resources/org/biojava/nbio/sequencing/io/fastq/empty.fastq: empty data/biojava4-live-4.2.12+dfsg/biojava-sequencing/src/test/resources/org/biojava/nbio/sequencing/io/fastq/solexa-invalid-repeat-description.fastq: ASCII text, with CRLF line terminators data/biojava4-live-4.2.12+dfsg/biojava-sequencing/src/test/resources/org/biojava/nbio/sequencing/io/fastq/error_qual_del.fastq: data data/biojava4-live-4.2.12+dfsg/biojava-sequencing/src/test/resources/org/biojava/nbio/sequencing/io/fastq/illumina_full_range_as_solexa.fastq: ASCII text data/biojava4-live-4.2.12+dfsg/biojava-sequencing/src/test/resources/org/biojava/nbio/sequencing/io/fastq/error_short_qual.fastq: ASCII text data/biojava4-live-4.2.12+dfsg/biojava-sequencing/src/test/resources/org/biojava/nbio/sequencing/io/fastq/wrapping_as_illumina.fastq: ASCII text data/biojava4-live-4.2.12+dfsg/biojava-sequencing/src/test/resources/org/biojava/nbio/sequencing/io/fastq/test3_illumina.fastq: ASCII text data/biojava4-live-4.2.12+dfsg/biojava-sequencing/src/test/resources/org/biojava/nbio/sequencing/io/fastq/solexa_full_range_original_solexa.fastq: ASCII text data/biojava4-live-4.2.12+dfsg/biojava-sequencing/src/test/resources/org/biojava/nbio/sequencing/io/fastq/misc_rna_original_sanger.fastq: ASCII text data/biojava4-live-4.2.12+dfsg/biojava-sequencing/src/test/resources/org/biojava/nbio/sequencing/io/fastq/sanger_93.fastq: ASCII text data/biojava4-live-4.2.12+dfsg/biojava-sequencing/src/test/resources/org/biojava/nbio/sequencing/io/fastq/misc_rna_as_sanger.fastq: ASCII text data/biojava4-live-4.2.12+dfsg/biojava-sequencing/src/test/resources/org/biojava/nbio/sequencing/io/fastq/error_trunc_at_seq.fastq: 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data/biojava4-live-4.2.12+dfsg/biojava-sequencing/src/test/resources/org/biojava/nbio/sequencing/io/fastq/illumina_faked.fastq: ASCII text data/biojava4-live-4.2.12+dfsg/biojava-sequencing/src/test/resources/org/biojava/nbio/sequencing/io/fastq/illumina_full_range_as_sanger.fastq: ASCII text data/biojava4-live-4.2.12+dfsg/biojava-sequencing/src/test/resources/org/biojava/nbio/sequencing/io/fastq/misc_dna_original_sanger.fastq: ASCII text data/biojava4-live-4.2.12+dfsg/biojava-sequencing/src/test/resources/org/biojava/nbio/sequencing/io/fastq/error_trunc_at_qual.fastq: ASCII text data/biojava4-live-4.2.12+dfsg/biojava-sequencing/src/test/resources/org/biojava/nbio/sequencing/io/fastq/sanger_full_range_original_sanger.fastq: ASCII text data/biojava4-live-4.2.12+dfsg/biojava-sequencing/src/test/resources/org/biojava/nbio/sequencing/io/fastq/longreads_as_sanger.fastq: ASCII text, with very long lines 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data/biojava4-live-4.2.12+dfsg/biojava-sequencing/src/test/java/org/biojava/nbio/sequencing/io/fastq/IlluminaFastqWriterTest.java: ASCII text data/biojava4-live-4.2.12+dfsg/biojava-sequencing/src/test/java/org/biojava/nbio/sequencing/io/fastq/SangerFastqWriterTest.java: ASCII text data/biojava4-live-4.2.12+dfsg/biojava-sequencing/src/test/java/org/biojava/nbio/sequencing/io/fastq/AbstractFastqReaderTest.java: Java source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-sequencing/src/test/java/org/biojava/nbio/sequencing/io/fastq/FastqToolsTest.java: Java source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-sequencing/src/test/java/org/biojava/nbio/sequencing/io/fastq/SolexaFastqReaderTest.java: Java source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-sequencing/src/test/java/org/biojava/nbio/sequencing/io/fastq/IlluminaFastqReaderTest.java: Java source, ASCII text 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data/biojava4-live-4.2.12+dfsg/biojava-alignment/src/test/java/org/biojava/nbio/alignment/CookbookAlignPairGlobal.java: C source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-alignment/src/test/java/org/biojava/nbio/alignment/FractionalSimilarityScorerTest.java: Java source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-alignment/src/test/java/org/biojava/nbio/alignment/SimpleProfileProfileAlignerTest.java: Java source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-alignment/src/test/java/org/biojava/nbio/alignment/GuideTreeTest.java: Java source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-alignment/src/test/java/org/biojava/nbio/alignment/NeedlemanWunschTest.java: Java source, ASCII text, with very long lines data/biojava4-live-4.2.12+dfsg/biojava-alignment/src/test/java/org/biojava/nbio/alignment/SimpleSubstitutionMatrixTest.java: Java source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-alignment/src/test/java/org/biojava/nbio/alignment/CookbookMSAProfiler.java: C source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-alignment/src/test/java/org/biojava/nbio/alignment/aaindex/TestAAINDEXLoading.java: Java source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-alignment/src/test/java/org/biojava/nbio/alignment/TestDNAAlignment.java: Java source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-alignment/src/test/java/org/biojava/nbio/alignment/LocalAlignmentTest.java: Java source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-alignment/src/test/java/org/biojava/nbio/alignment/SimpleGapPenaltyTest.java: Java source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-alignment/src/test/java/org/biojava/nbio/alignment/CookbookMSA.java: C source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-alignment/src/test/java/org/biojava/nbio/alignment/CookbookAlignAllLocal.java: C source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-alignment/src/test/java/org/biojava/nbio/alignment/CookbookAlignPairLocal.java: C source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-alignment/src/test/java/org/biojava/nbio/alignment/TestSubOptimalMSA.java: Java source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-alignment/src/test/java/org/biojava/nbio/alignment/SimpleProfilePairTest.java: Java source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-alignment/src/test/java/org/biojava/nbio/alignment/SmithWatermanTest.java: Java source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-alignment/src/test/java/org/biojava/nbio/alignment/routines/GuanUberbacherTest.java: Java source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-alignment/src/test/java/org/biojava/nbio/alignment/routines/AlignerHelperTest.java: Java source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-alignment/src/test/java/org/biojava/nbio/alignment/CookbookAlignAllGlobal.java: C source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-alignment/src/test/java/org/biojava/nbio/alignment/io/TestStockholmParser.java: Java source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-alignment/src/test/java/org/biojava/nbio/alignment/FractionalIdentityScorerTest.java: Java source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-alignment/src/main/resources/log4j2.xml: XML 1.0 document, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-alignment/src/main/java/org/biojava/nbio/alignment/template/CallableProfileProfileAligner.java: Java source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-alignment/src/main/java/org/biojava/nbio/alignment/template/AbstractScorer.java: ASCII text data/biojava4-live-4.2.12+dfsg/biojava-alignment/src/main/java/org/biojava/nbio/alignment/template/AbstractPairwiseSequenceAligner.java: Java source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-alignment/src/main/java/org/biojava/nbio/alignment/template/RescoreRefiner.java: Java source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-alignment/src/main/java/org/biojava/nbio/alignment/template/Scorer.java: ASCII text data/biojava4-live-4.2.12+dfsg/biojava-alignment/src/main/java/org/biojava/nbio/alignment/template/AbstractProfileProfileAligner.java: Java source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-alignment/src/main/java/org/biojava/nbio/alignment/template/PartitionRefiner.java: Java source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-alignment/src/main/java/org/biojava/nbio/alignment/template/ProfileProfileAligner.java: Java source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-alignment/src/main/java/org/biojava/nbio/alignment/template/CallablePairwiseSequenceAligner.java: Java source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-alignment/src/main/java/org/biojava/nbio/alignment/template/HierarchicalClusterer.java: Java source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-alignment/src/main/java/org/biojava/nbio/alignment/template/MatrixAligner.java: Java source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-alignment/src/main/java/org/biojava/nbio/alignment/template/GapPenalty.java: ASCII text data/biojava4-live-4.2.12+dfsg/biojava-alignment/src/main/java/org/biojava/nbio/alignment/template/GuideTreeNode.java: Java source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-alignment/src/main/java/org/biojava/nbio/alignment/template/Aligner.java: Java source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-alignment/src/main/java/org/biojava/nbio/alignment/template/PairwiseSequenceScorer.java: Java source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-alignment/src/main/java/org/biojava/nbio/alignment/template/PairwiseSequenceAligner.java: Java source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-alignment/src/main/java/org/biojava/nbio/alignment/template/PairInProfileScorer.java: Java source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-alignment/src/main/java/org/biojava/nbio/alignment/template/ProfileProfileScorer.java: Java source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-alignment/src/main/java/org/biojava/nbio/alignment/template/AbstractMatrixAligner.java: Java source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-alignment/src/main/java/org/biojava/nbio/alignment/template/CallablePairwiseSequenceScorer.java: Java source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-alignment/src/main/java/org/biojava/nbio/alignment/SimpleProfileProfileAligner.java: Java source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-alignment/src/main/java/org/biojava/nbio/alignment/SmithWaterman.java: Java source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-alignment/src/main/java/org/biojava/nbio/alignment/GuideTree.java: Java source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-alignment/src/main/java/org/biojava/nbio/alignment/FractionalIdentityScorer.java: Java source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-alignment/src/main/java/org/biojava/nbio/alignment/FractionalSimilarityInProfileScorer.java: Java source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-alignment/src/main/java/org/biojava/nbio/alignment/SimpleGapPenalty.java: Java source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-alignment/src/main/java/org/biojava/nbio/alignment/Alignments.java: Java source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-alignment/src/main/java/org/biojava/nbio/alignment/NeedlemanWunsch.java: Java source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-alignment/src/main/java/org/biojava/nbio/alignment/FractionalIdentityInProfileScorer.java: Java source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-alignment/src/main/java/org/biojava/nbio/alignment/StandardRescoreRefiner.java: Java source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-alignment/src/main/java/org/biojava/nbio/alignment/SubstitutionMatrixScorer.java: Java source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-alignment/src/main/java/org/biojava/nbio/alignment/FractionalSimilarityScorer.java: Java source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-alignment/src/main/java/org/biojava/nbio/alignment/routines/AlignerHelper.java: Java source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-alignment/src/main/java/org/biojava/nbio/alignment/routines/GuanUberbacher.java: Java source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-alignment/src/main/java/org/biojava/nbio/alignment/routines/AnchoredPairwiseSequenceAligner.java: Java source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-alignment/src/main/java/org/biojava/nbio/alignment/io/StockholmFileParser.java: HTML document, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-alignment/src/main/java/org/biojava/nbio/alignment/io/StockholmResidueAnnotation.java: C++ source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-alignment/src/main/java/org/biojava/nbio/alignment/io/StockholmConsensusAnnotation.java: C++ source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-alignment/src/main/java/org/biojava/nbio/alignment/io/StockholmSequenceAnnotation.java: C++ source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-alignment/src/main/java/org/biojava/nbio/alignment/io/StockholmFileAnnotation.java: Java source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-alignment/src/main/java/org/biojava/nbio/alignment/io/StockholmStructure.java: HTML document, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-alignment/src/main/java/demo/DemoAlignProteins.java: Perl5 module source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-alignment/src/main/java/demo/DemoLoadSubstMax.java: Perl5 module source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-alignment/src/main/java/demo/TestDNANeedlemanWunsch.java: Perl5 module source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-alignment/src/main/java/demo/CookbookMSA.java: Perl5 module source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-structure/readme.md: HTML document, ASCII text, with very long lines data/biojava4-live-4.2.12+dfsg/biojava-structure/pom.xml: XML 1.0 document, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-structure/.gitignore: ASCII text data/biojava4-live-4.2.12+dfsg/biojava-structure/src/test/resources/org/biojava/nbio/structure/io/4lup_phenix_output.pdb.gz: gzip compressed data, was "4lup_phenix_output.pdb", last modified: Mon Jul 27 13:40:06 2015, from Unix, original size modulo 2^32 458845 data/biojava4-live-4.2.12+dfsg/biojava-structure/src/test/resources/org/biojava/nbio/structure/io/3ddo_raw_noseqres.pdb.gz: gzip compressed data, was "3ddo_raw.pdb", last modified: Wed Mar 25 11:24:00 2015, from Unix, 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data/biojava4-live-4.2.12+dfsg/biojava-structure/src/main/java/org/biojava/nbio/structure/cath/CathNode.java: Java source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-structure/src/main/java/org/biojava/nbio/structure/cath/CathInstallation.java: Java source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-structure/src/main/java/org/biojava/nbio/structure/cath/CathDatabase.java: Java source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-structure/src/main/java/org/biojava/nbio/structure/cath/CathCategory.java: ASCII text data/biojava4-live-4.2.12+dfsg/biojava-structure/src/main/java/demo/DemoMMCIFReader.java: Perl5 module source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-structure/src/main/java/demo/DemoCrystalInterfaces.java: Perl5 module source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-structure/src/main/java/demo/DemoFATCAT.java: Perl5 module source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-structure/src/main/java/demo/DemoSecStrucCalc.java: Perl5 module source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-structure/src/main/java/demo/DemoCATH.java: Perl5 module source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-structure/src/main/java/demo/DemoSCOP.java: Perl5 module source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-structure/src/main/java/demo/DemoCeSymm.java: Perl5 module source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-structure/src/main/java/demo/DemoCE.java: Perl5 module source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-structure/src/main/java/demo/DemoContacts.java: Perl5 module source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-structure/src/main/java/demo/DemoCommandLineStartup.java: Perl5 module source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-structure/src/main/java/demo/DemoAsa.java: Perl5 module source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-structure/src/main/java/demo/DemoBerkeleyScop.java: Perl5 module source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-structure/src/main/java/demo/ChemCompDistribution.java: Perl5 module source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-structure/src/main/java/demo/DemoChangeChemCompProvider.java: Perl5 module source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-structure/src/main/java/demo/DemoAtomCache.java: Perl5 module source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-structure/src/main/java/demo/DemoDomainsplit.java: Perl5 module source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-structure/src/main/java/demo/DemoMultipleMC.java: Perl5 module source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-structure/src/main/java/demo/DemoLoadSecStruc.java: Perl5 module source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-structure/src/main/java/demo/DemoLoadStructure.java: Perl5 module source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-structure/src/main/java/META-INF/MANIFEST.MF: ASCII text, with CRLF line terminators 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data/biojava4-live-4.2.12+dfsg/biojava-structure-gui/src/main/java/org/biojava/nbio/structure/symmetry/gui/SymmetryListener.java: Java source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-structure-gui/src/main/java/org/biojava/nbio/structure/symmetry/gui/SymmetryDisplay.java: Java source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-structure-gui/src/main/java/org/biojava/nbio/structure/symmetry/gui/SymmetryCalc.java: Java source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-structure-gui/src/main/java/org/biojava/nbio/structure/symmetry/gui/SymmetryGui.java: C source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-structure-gui/src/main/java/org/biojava/nbio/structure/symmetry/analysis/CalcBioAssemblySymmetry.java: Java source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-structure-gui/src/main/java/org/biojava/nbio/structure/symmetry/jmolScript/JmolSymmetryScriptGeneratorH.java: Java source, ASCII text 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data/biojava4-live-4.2.12+dfsg/biojava-genome/src/main/java/org/biojava/nbio/genome/parsers/gff/Location.java: Java source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-genome/src/main/java/org/biojava/nbio/genome/parsers/gff/FeatureHelper.java: Java source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-genome/src/main/java/org/biojava/nbio/genome/parsers/gff/LocIterator.java: C source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-genome/src/main/java/org/biojava/nbio/genome/parsers/gff/FeatureList.java: Java source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-genome/src/main/java/org/biojava/nbio/genome/parsers/gff/GeneMarkGTFReader.java: C source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-genome/src/main/java/org/biojava/nbio/genome/parsers/gff/FeatureI.java: Java source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-genome/src/main/java/org/biojava/nbio/genome/parsers/gff/Feature.java: Java source, ASCII text 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data/biojava4-live-4.2.12+dfsg/biojava-aa-prop/src/main/resources/MinAminoAcidComposition.xml: XML 1.0 document, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-aa-prop/src/main/resources/ElementMass.xsd: XML 1.0 document, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-aa-prop/src/main/resources/MinElementMass.xml: XML 1.0 document, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-aa-prop/src/main/resources/AdvancedAminoAcidComposition.xml: XML 1.0 document, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-aa-prop/src/main/resources/ElementMass.xml: XML 1.0 document, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-aa-prop/src/main/resources/AminoAcidComposition.xsd: XML 1.0 document, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-aa-prop/src/main/resources/Simplified_compound.xml: XML 1.0 document, ASCII text, with CRLF line terminators data/biojava4-live-4.2.12+dfsg/biojava-aa-prop/src/main/assembly/assembly.xml: exported SGML document, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-aa-prop/src/main/java/org/biojava/nbio/aaproperties/CommandPrompt.java: C source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-aa-prop/src/main/java/org/biojava/nbio/aaproperties/PeptideProperties.java: HTML document, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-aa-prop/src/main/java/org/biojava/nbio/aaproperties/xml/SchemaGenerator.java: Java source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-aa-prop/src/main/java/org/biojava/nbio/aaproperties/xml/ElementTable.java: Java source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-aa-prop/src/main/java/org/biojava/nbio/aaproperties/xml/MyValidationEventHandler.java: Java source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-aa-prop/src/main/java/org/biojava/nbio/aaproperties/xml/Name2Count.java: Java source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-aa-prop/src/main/java/org/biojava/nbio/aaproperties/xml/AminoAcidCompositionTable.java: Java source, ASCII text 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data/biojava4-live-4.2.12+dfsg/biojava-aa-prop/src/main/java/org/biojava/nbio/aaproperties/IPeptideProperties.java: HTML document, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-aa-prop/src/main/java/org/biojava/nbio/aaproperties/Utils.java: Java source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-aa-prop/src/main/java/org/biojava/nbio/aaproperties/Constraints.java: Java source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-aa-prop/src/main/java/org/biojava/nbio/aaproperties/profeat/convertor/Convert2SecondaryStructure.java: ASCII text data/biojava4-live-4.2.12+dfsg/biojava-aa-prop/src/main/java/org/biojava/nbio/aaproperties/profeat/convertor/Convert2Charge.java: ASCII text data/biojava4-live-4.2.12+dfsg/biojava-aa-prop/src/main/java/org/biojava/nbio/aaproperties/profeat/convertor/Convert2Polarizability.java: ASCII text data/biojava4-live-4.2.12+dfsg/biojava-aa-prop/src/main/java/org/biojava/nbio/aaproperties/profeat/convertor/Convert2Polarity.java: ASCII text 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source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-forester/src/main/java/org/forester/io/parsers/phyloxml/data/PhylogenyDataPhyloXmlParser.java: Java source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-forester/src/main/java/org/forester/io/parsers/phyloxml/data/EventParser.java: Java source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-forester/src/main/java/org/forester/io/parsers/phyloxml/data/ConfidenceParser.java: Java source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-forester/src/main/java/org/forester/io/parsers/phyloxml/data/AnnotationParser.java: Java source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-forester/src/main/java/org/forester/io/parsers/phyloxml/data/IdentifierParser.java: Java source, ASCII text data/biojava4-live-4.2.12+dfsg/biojava-forester/src/main/java/org/forester/io/parsers/phyloxml/data/PropertyParser.java: Java source, ASCII text 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data/biojava4-live-4.2.12+dfsg/biojava-integrationtest/src/test/resources/1j59.cif: ASCII text data/biojava4-live-4.2.12+dfsg/biojava-integrationtest/src/test/resources/1fdo.cif: ASCII text, with very long lines data/biojava4-live-4.2.12+dfsg/biojava-integrationtest/src/test/resources/1fdo.pdb: Protein Data Bank data, ID Code 1FDO, 27-JAN-97 data/biojava4-live-4.2.12+dfsg/biojava-integrationtest/src/test/resources/2kc9.cif: ASCII text data/biojava4-live-4.2.12+dfsg/biojava-integrationtest/src/test/resources/1tap.pdb: Protein Data Bank data, ID Code 1TAP, 16-AUG-94 data/biojava4-live-4.2.12+dfsg/biojava-integrationtest/src/test/resources/random_10000_set.list: ASCII text data/biojava4-live-4.2.12+dfsg/biojava-integrationtest/src/test/resources/5pti_old.pdb: Protein Data Bank data, ID Code 5PTI, 05-OCT-84 data/biojava4-live-4.2.12+dfsg/biojava-integrationtest/src/test/resources/align/31BI_symm_align.xml: ASCII text, with very long lines 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