data/biosquid-1.9g+cvs20050121/00CHECKLIST: ASCII text data/biosquid-1.9g+cvs20050121/00README: ASCII text data/biosquid-1.9g+cvs20050121/Bugs/BUGTRAX: ASCII text data/biosquid-1.9g+cvs20050121/Docs/abstract.tex: LaTeX document, ASCII text data/biosquid-1.9g+cvs20050121/Docs/formats.tex: LaTeX document, ASCII text data/biosquid-1.9g+cvs20050121/Docs/gsi-format.tex: LaTeX document, ASCII text data/biosquid-1.9g+cvs20050121/Docs/intro.tex: LaTeX document, ASCII text data/biosquid-1.9g+cvs20050121/Docs/macros.tex: LaTeX document, ASCII text data/biosquid-1.9g+cvs20050121/Docs/main.tex: LaTeX document, ASCII text data/biosquid-1.9g+cvs20050121/Docs/selex.tex: LaTeX document, ASCII text data/biosquid-1.9g+cvs20050121/Docs/squid-format.tex: LaTeX document, ASCII text data/biosquid-1.9g+cvs20050121/Docs/ssi-format.tex: LaTeX 2e document, ASCII text data/biosquid-1.9g+cvs20050121/Formats/a2m: ASCII text data/biosquid-1.9g+cvs20050121/Formats/clustal: ASCII text data/biosquid-1.9g+cvs20050121/Formats/embl: ASCII text data/biosquid-1.9g+cvs20050121/Formats/fasta: ASCII text data/biosquid-1.9g+cvs20050121/Formats/formattest.pl: Perl script text executable data/biosquid-1.9g+cvs20050121/Formats/gcg: ASCII text data/biosquid-1.9g+cvs20050121/Formats/genbank: ASCII text data/biosquid-1.9g+cvs20050121/Formats/msf: ASCII text data/biosquid-1.9g+cvs20050121/Formats/phylip: ASCII text data/biosquid-1.9g+cvs20050121/Formats/pir: ASCII text data/biosquid-1.9g+cvs20050121/Formats/regression.dat: ASCII text data/biosquid-1.9g+cvs20050121/Formats/swissprot: ASCII text data/biosquid-1.9g+cvs20050121/Formats/gcgdata.1: ASCII text, with very long lines data/biosquid-1.9g+cvs20050121/Formats/selex.1: ASCII text data/biosquid-1.9g+cvs20050121/Formats/stockholm.1: ASCII text data/biosquid-1.9g+cvs20050121/Formats/gcgdata.2: data data/biosquid-1.9g+cvs20050121/Formats/selex.2: ASCII text data/biosquid-1.9g+cvs20050121/Formats/stockholm.2: ASCII text data/biosquid-1.9g+cvs20050121/INSTALL: ASCII text data/biosquid-1.9g+cvs20050121/LOG: ASCII text data/biosquid-1.9g+cvs20050121/Licenses/COPYRIGHT.gnu: ASCII text data/biosquid-1.9g+cvs20050121/Licenses/LICENSE.gnu: ASCII text data/biosquid-1.9g+cvs20050121/Licenses/gnu: ASCII text data/biosquid-1.9g+cvs20050121/Man/afetch.man: troff or preprocessor input, ASCII text data/biosquid-1.9g+cvs20050121/Man/alistat.man: troff or preprocessor input, ASCII text data/biosquid-1.9g+cvs20050121/Man/compstruct.man: troff or preprocessor input, ASCII text data/biosquid-1.9g+cvs20050121/Man/seqstat.man: troff or preprocessor input, ASCII text data/biosquid-1.9g+cvs20050121/Man/sfetch.man: troff or preprocessor input, ASCII text data/biosquid-1.9g+cvs20050121/Man/shuffle.man: troff or preprocessor input, ASCII text data/biosquid-1.9g+cvs20050121/Man/sindex.man: troff or preprocessor input, ASCII text data/biosquid-1.9g+cvs20050121/Man/sreformat.man: troff or preprocessor input, ASCII text data/biosquid-1.9g+cvs20050121/Testsuite/00README: ASCII text data/biosquid-1.9g+cvs20050121/Testsuite/exercises.sqc: ASCII text data/biosquid-1.9g+cvs20050121/Testsuite/testsuite.pm: Perl5 module source, ASCII text data/biosquid-1.9g+cvs20050121/Testsuite/translate-test.pl: Perl script text executable data/biosquid-1.9g+cvs20050121/Testsuite/iospeed_main.c: C source, ASCII text data/biosquid-1.9g+cvs20050121/Testsuite/rndspeed_main.c: C source, ASCII text data/biosquid-1.9g+cvs20050121/Testsuite/sqdconfig_main.c: C source, ASCII text data/biosquid-1.9g+cvs20050121/Testsuite/bug-1-sfetch-paths: Perl script text executable data/biosquid-1.9g+cvs20050121/Testsuite/x-base-afetch: Perl script text executable data/biosquid-1.9g+cvs20050121/Testsuite/x-base-alistat: Perl script text executable data/biosquid-1.9g+cvs20050121/Testsuite/x-base-seqstat: Perl script text executable data/biosquid-1.9g+cvs20050121/Testsuite/x-base-sfetch: Perl script text executable data/biosquid-1.9g+cvs20050121/Testsuite/x-base-shuffle: Perl script text executable data/biosquid-1.9g+cvs20050121/Testsuite/x-base-sindex: Perl script text executable data/biosquid-1.9g+cvs20050121/Testsuite/x-base-sreformat: Perl script text executable data/biosquid-1.9g+cvs20050121/Testsuite/Makefile.in: makefile script, ASCII text data/biosquid-1.9g+cvs20050121/config.sub: POSIX shell script, ASCII text executable data/biosquid-1.9g+cvs20050121/install-sh: POSIX shell script, ASCII text executable data/biosquid-1.9g+cvs20050121/squid.h.in: C source, ASCII text data/biosquid-1.9g+cvs20050121/squidconf.h.in: C source, ASCII text data/biosquid-1.9g+cvs20050121/a2m.c: C source, ASCII text data/biosquid-1.9g+cvs20050121/afetch_main.c: C source, ASCII text data/biosquid-1.9g+cvs20050121/aligneval.c: C source, ASCII text data/biosquid-1.9g+cvs20050121/alignio.c: C source, ASCII text data/biosquid-1.9g+cvs20050121/alistat_main.c: C source, ASCII text data/biosquid-1.9g+cvs20050121/clustal.c: C source, ASCII text data/biosquid-1.9g+cvs20050121/cluster.c: C source, ASCII text data/biosquid-1.9g+cvs20050121/compalign_main.c: C source, ASCII text data/biosquid-1.9g+cvs20050121/compstruct_main.c: C source, ASCII text data/biosquid-1.9g+cvs20050121/dayhoff.c: C source, ASCII text data/biosquid-1.9g+cvs20050121/dirichlet.c: C source, ASCII text data/biosquid-1.9g+cvs20050121/eps.c: C source, ASCII text data/biosquid-1.9g+cvs20050121/file.c: C source, ASCII text data/biosquid-1.9g+cvs20050121/gki.c: C source, ASCII text data/biosquid-1.9g+cvs20050121/hsregex.c: C source, ASCII text data/biosquid-1.9g+cvs20050121/iupac.c: C source, ASCII text data/biosquid-1.9g+cvs20050121/msa.c: C source, ASCII text data/biosquid-1.9g+cvs20050121/msf.c: C source, ASCII text data/biosquid-1.9g+cvs20050121/phylip.c: C source, ASCII text data/biosquid-1.9g+cvs20050121/revcomp.c: C source, ASCII text data/biosquid-1.9g+cvs20050121/revcomp_main.c: C source, ASCII text data/biosquid-1.9g+cvs20050121/rk.c: C source, ASCII text data/biosquid-1.9g+cvs20050121/selex.c: C source, ASCII text data/biosquid-1.9g+cvs20050121/seqencode.c: C source, ASCII text data/biosquid-1.9g+cvs20050121/seqsplit_main.c: C source, ASCII text data/biosquid-1.9g+cvs20050121/seqstat_main.c: C source, ASCII text data/biosquid-1.9g+cvs20050121/sfetch_main.c: C source, ASCII text data/biosquid-1.9g+cvs20050121/shuffle.c: C source, ASCII text data/biosquid-1.9g+cvs20050121/shuffle_main.c: C source, ASCII text data/biosquid-1.9g+cvs20050121/sindex_main.c: C source, ASCII text data/biosquid-1.9g+cvs20050121/sqerror.c: C source, ASCII text data/biosquid-1.9g+cvs20050121/sqio.c: C source, ASCII text data/biosquid-1.9g+cvs20050121/squidcore.c: C source, ASCII text data/biosquid-1.9g+cvs20050121/sre_ctype.c: C source, ASCII text data/biosquid-1.9g+cvs20050121/sre_math.c: C source, ASCII text data/biosquid-1.9g+cvs20050121/sre_random.c: C source, ASCII text data/biosquid-1.9g+cvs20050121/sre_stack.c: C source, ASCII text data/biosquid-1.9g+cvs20050121/sre_string.c: C source, ASCII text data/biosquid-1.9g+cvs20050121/sreformat_main.c: C source, ASCII text data/biosquid-1.9g+cvs20050121/ssi.c: C source, ASCII text data/biosquid-1.9g+cvs20050121/stockholm.c: C source, ASCII text data/biosquid-1.9g+cvs20050121/stopwatch.c: C source, ASCII text data/biosquid-1.9g+cvs20050121/test_main.c: C source, ASCII text data/biosquid-1.9g+cvs20050121/translate.c: C source, ASCII text data/biosquid-1.9g+cvs20050121/translate_main.c: C source, ASCII text data/biosquid-1.9g+cvs20050121/types.c: C source, ASCII text data/biosquid-1.9g+cvs20050121/vectorops.c: C source, ASCII text data/biosquid-1.9g+cvs20050121/weight.c: C source, ASCII text data/biosquid-1.9g+cvs20050121/weight_main.c: C source, ASCII text data/biosquid-1.9g+cvs20050121/wuss.c: C source, ASCII text data/biosquid-1.9g+cvs20050121/dirichlet.h: C source, ASCII text data/biosquid-1.9g+cvs20050121/gki.h: C source, ASCII text data/biosquid-1.9g+cvs20050121/msa.h: C source, ASCII text data/biosquid-1.9g+cvs20050121/rk.h: C source, ASCII text data/biosquid-1.9g+cvs20050121/sqfuncs.h: C source, ASCII text data/biosquid-1.9g+cvs20050121/sre_random.h: C source, ASCII text data/biosquid-1.9g+cvs20050121/sre_stack.h: C source, ASCII text data/biosquid-1.9g+cvs20050121/ssi.h: C source, ASCII text data/biosquid-1.9g+cvs20050121/stockholm.h: C source, ASCII text data/biosquid-1.9g+cvs20050121/stopwatch.h: C source, ASCII text data/biosquid-1.9g+cvs20050121/vectorops.h: C source, ASCII text data/biosquid-1.9g+cvs20050121/debian/README.test: UTF-8 Unicode text data/biosquid-1.9g+cvs20050121/debian/biosquid-dev.install: ASCII text data/biosquid-1.9g+cvs20050121/debian/biosquid.README.Debian: ASCII text data/biosquid-1.9g+cvs20050121/debian/biosquid.install: ASCII text data/biosquid-1.9g+cvs20050121/debian/biosquid.manpages: ASCII text data/biosquid-1.9g+cvs20050121/debian/changelog: UTF-8 Unicode text data/biosquid-1.9g+cvs20050121/debian/compalign.1: troff or preprocessor input, ASCII text data/biosquid-1.9g+cvs20050121/debian/control: ASCII text data/biosquid-1.9g+cvs20050121/debian/copyright: UTF-8 Unicode text data/biosquid-1.9g+cvs20050121/debian/libsquid-dev.README.Debian: ASCII text data/biosquid-1.9g+cvs20050121/debian/libsquid-dev.docs: ASCII text data/biosquid-1.9g+cvs20050121/debian/libsquid-dev.examples: ASCII text data/biosquid-1.9g+cvs20050121/debian/patches/Makefile.in.patch: unified diff output, ASCII text data/biosquid-1.9g+cvs20050121/debian/patches/afetch.man.patch: unified diff output, ASCII text data/biosquid-1.9g+cvs20050121/debian/patches/alistat.man.patch: unified diff output, ASCII text data/biosquid-1.9g+cvs20050121/debian/patches/automake.patch: unified diff output, ASCII text data/biosquid-1.9g+cvs20050121/debian/patches/compstruct.man.patch: unified diff output, ASCII text data/biosquid-1.9g+cvs20050121/debian/patches/getopt-segmentation-fault.patch: unified diff output, UTF-8 Unicode text data/biosquid-1.9g+cvs20050121/debian/patches/perl-testsuite-inc.patch: unified diff output, ASCII text data/biosquid-1.9g+cvs20050121/debian/patches/pkg-config.patch: unified diff output, ASCII text data/biosquid-1.9g+cvs20050121/debian/patches/reproducible.patch: unified diff output, ASCII text data/biosquid-1.9g+cvs20050121/debian/patches/seqstat.man.patch: unified diff output, ASCII text data/biosquid-1.9g+cvs20050121/debian/patches/series: ASCII text data/biosquid-1.9g+cvs20050121/debian/patches/sfetch.man.patch: unified diff output, ASCII text data/biosquid-1.9g+cvs20050121/debian/patches/shuffle.man.patch: unified diff output, ASCII text data/biosquid-1.9g+cvs20050121/debian/patches/sindex.man.patch: unified diff output, ASCII text data/biosquid-1.9g+cvs20050121/debian/patches/sreformat.man.patch: unified diff output, ASCII text data/biosquid-1.9g+cvs20050121/debian/revcomp.1: troff or preprocessor input, ASCII text data/biosquid-1.9g+cvs20050121/debian/rules: a /usr/bin/make -f script, ASCII text executable data/biosquid-1.9g+cvs20050121/debian/salsa-ci.yml: ASCII text data/biosquid-1.9g+cvs20050121/debian/seqsplit.1: troff or preprocessor input, ASCII text data/biosquid-1.9g+cvs20050121/debian/source/format: ASCII text data/biosquid-1.9g+cvs20050121/debian/stranslate.1: troff or preprocessor input, ASCII text data/biosquid-1.9g+cvs20050121/debian/tests/control: ASCII text data/biosquid-1.9g+cvs20050121/debian/tests/run-unit-test: POSIX shell script, ASCII text executable data/biosquid-1.9g+cvs20050121/debian/upstream/metadata: ASCII text data/biosquid-1.9g+cvs20050121/debian/watch: ASCII text data/biosquid-1.9g+cvs20050121/debian/weight.1: troff or preprocessor input, ASCII text data/biosquid-1.9g+cvs20050121/.pc/.version: ASCII text data/biosquid-1.9g+cvs20050121/.pc/.quilt_patches: ASCII text data/biosquid-1.9g+cvs20050121/.pc/.quilt_series: ASCII text data/biosquid-1.9g+cvs20050121/.pc/applied-patches: ASCII text data/biosquid-1.9g+cvs20050121/.pc/afetch.man.patch/Man/afetch.man: troff or preprocessor input, ASCII text data/biosquid-1.9g+cvs20050121/.pc/alistat.man.patch/Man/alistat.man: troff or preprocessor input, ASCII text data/biosquid-1.9g+cvs20050121/.pc/compstruct.man.patch/Man/compstruct.man: troff or preprocessor input, ASCII text data/biosquid-1.9g+cvs20050121/.pc/Makefile.in.patch/Makefile.in: makefile script, ASCII text data/biosquid-1.9g+cvs20050121/.pc/seqstat.man.patch/Man/seqstat.man: troff or preprocessor input, ASCII text data/biosquid-1.9g+cvs20050121/.pc/sfetch.man.patch/Man/sfetch.man: troff or preprocessor input, ASCII text data/biosquid-1.9g+cvs20050121/.pc/shuffle.man.patch/Man/shuffle.man: troff or preprocessor input, ASCII text data/biosquid-1.9g+cvs20050121/.pc/sindex.man.patch/Man/sindex.man: troff or preprocessor input, ASCII text data/biosquid-1.9g+cvs20050121/.pc/sreformat.man.patch/Man/sreformat.man: troff or preprocessor input, ASCII text data/biosquid-1.9g+cvs20050121/.pc/getopt-segmentation-fault.patch/getopt.c: C source, ASCII text data/biosquid-1.9g+cvs20050121/.pc/reproducible.patch/Testsuite/Makefile.in: makefile script, ASCII text data/biosquid-1.9g+cvs20050121/.pc/perl-testsuite-inc.patch/Testsuite/bug-1-sfetch-paths: Perl script text executable data/biosquid-1.9g+cvs20050121/.pc/perl-testsuite-inc.patch/Testsuite/x-base-afetch: Perl script text executable data/biosquid-1.9g+cvs20050121/.pc/perl-testsuite-inc.patch/Testsuite/x-base-alistat: Perl script text executable data/biosquid-1.9g+cvs20050121/.pc/perl-testsuite-inc.patch/Testsuite/x-base-seqstat: Perl script text executable data/biosquid-1.9g+cvs20050121/.pc/perl-testsuite-inc.patch/Testsuite/x-base-sfetch: Perl script text executable data/biosquid-1.9g+cvs20050121/.pc/perl-testsuite-inc.patch/Testsuite/x-base-shuffle: Perl script text executable data/biosquid-1.9g+cvs20050121/.pc/perl-testsuite-inc.patch/Testsuite/x-base-sindex: Perl script text executable data/biosquid-1.9g+cvs20050121/.pc/perl-testsuite-inc.patch/Testsuite/x-base-sreformat: Perl script text executable data/biosquid-1.9g+cvs20050121/.pc/automake.patch/Makefile.am: empty data/biosquid-1.9g+cvs20050121/.pc/automake.patch/configure.ac: C source, ASCII text data/biosquid-1.9g+cvs20050121/.pc/automake.patch/Testsuite/Makefile.in: makefile script, ASCII text data/biosquid-1.9g+cvs20050121/.pc/pkg-config.patch/libsquid.pc.in: empty data/biosquid-1.9g+cvs20050121/.pc/pkg-config.patch/configure.ac: C source, ASCII text data/biosquid-1.9g+cvs20050121/.pc/pkg-config.patch/Makefile.am: ASCII text data/biosquid-1.9g+cvs20050121/Makefile.in: makefile script, ASCII text data/biosquid-1.9g+cvs20050121/getopt.c: C source, ASCII text data/biosquid-1.9g+cvs20050121/libsquid.pc.in: ASCII text data/biosquid-1.9g+cvs20050121/configure.ac: C source, ASCII text data/biosquid-1.9g+cvs20050121/Makefile.am: ASCII text