data/clonalframe-1.2/src/alignment.cpp:                        C++ source, ASCII text
data/clonalframe-1.2/src/alignment.h:                          C++ source, ASCII text
data/clonalframe-1.2/src/alignment_structure.cpp:              C++ source, ASCII text
data/clonalframe-1.2/src/alignment_structure.h:                C++ source, ASCII text
data/clonalframe-1.2/src/alignment_xmfa.cpp:                   C++ source, ASCII text
data/clonalframe-1.2/src/alignment_xmfa.h:                     C++ source, ASCII text
data/clonalframe-1.2/src/boot.cpp:                             C++ source, ASCII text
data/clonalframe-1.2/src/boot.h:                               C++ source, ASCII text
data/clonalframe-1.2/src/burst.cpp:                            C++ source, ASCII text
data/clonalframe-1.2/src/burst.h:                              C++ source, ASCII text
data/clonalframe-1.2/src/ClonalFrame.cpp:                      C source, ASCII text
data/clonalframe-1.2/src/consensus.cpp:                        C++ source, ASCII text
data/clonalframe-1.2/src/consensus.h:                          C++ source, ASCII text
data/clonalframe-1.2/src/genes.cpp:                            C++ source, ASCII text
data/clonalframe-1.2/src/genes.h:                              C++ source, ASCII text
data/clonalframe-1.2/src/hashcell.cpp:                         C++ source, ASCII text
data/clonalframe-1.2/src/hashcell.h:                           C++ source, ASCII text
data/clonalframe-1.2/src/move.cpp:                             C++ source, ASCII text
data/clonalframe-1.2/src/move.h:                               C++ source, ASCII text
data/clonalframe-1.2/src/move_ages.cpp:                        C++ source, ASCII text
data/clonalframe-1.2/src/move_ages.h:                          C++ source, ASCII text
data/clonalframe-1.2/src/move_delta.cpp:                       C++ source, ASCII text
data/clonalframe-1.2/src/move_delta.h:                         C++ source, ASCII text
data/clonalframe-1.2/src/move_gap.cpp:                         C++ source, ASCII text
data/clonalframe-1.2/src/move_gap.h:                           C++ source, ASCII text
data/clonalframe-1.2/src/move_hidden.h:                        C++ source, ASCII text
data/clonalframe-1.2/src/move_hidden2.cpp:                     C++ source, ASCII text
data/clonalframe-1.2/src/move_hidden2.h:                       C++ source, ASCII text
data/clonalframe-1.2/src/move_mu.cpp:                          C++ source, ASCII text
data/clonalframe-1.2/src/move_mu.h:                            C++ source, ASCII text
data/clonalframe-1.2/src/move_nu.cpp:                          C++ source, ASCII text
data/clonalframe-1.2/src/move_nu.h:                            C++ source, ASCII text
data/clonalframe-1.2/src/move_rho.cpp:                         C++ source, ASCII text
data/clonalframe-1.2/src/move_rho.h:                           C++ source, ASCII text
data/clonalframe-1.2/src/move_wb.cpp:                          C++ source, ASCII text
data/clonalframe-1.2/src/move_wb.h:                            C++ source, ASCII text
data/clonalframe-1.2/src/param.cpp:                            C++ source, ASCII text
data/clonalframe-1.2/src/param.h:                              C++ source, ASCII text
data/clonalframe-1.2/src/recorder.cpp:                         C++ source, ASCII text
data/clonalframe-1.2/src/recorder.h:                           C++ source, ASCII text
data/clonalframe-1.2/src/timeval.h:                            C source, ASCII text
data/clonalframe-1.2/src/tree.cpp:                             C++ source, ASCII text
data/clonalframe-1.2/src/tree.h:                               C++ source, ASCII text, with very long lines
data/clonalframe-1.2/src/tree_coal.cpp:                        C++ source, ASCII text
data/clonalframe-1.2/src/tree_coal.h:                          C++ source, ASCII text
data/clonalframe-1.2/src/tree_newick.cpp:                      C++ source, ASCII text
data/clonalframe-1.2/src/tree_newick.h:                        C++ source, ASCII text
data/clonalframe-1.2/src/tree_simple.cpp:                      C++ source, ASCII text
data/clonalframe-1.2/src/tree_simple.h:                        C++ source, ASCII text
data/clonalframe-1.2/src/tree_upgma.cpp:                       C++ source, ASCII text
data/clonalframe-1.2/src/tree_upgma.h:                         C++ source, ASCII text
data/clonalframe-1.2/src/move_hidden.cpp:                      C++ source, ASCII text
data/clonalframe-1.2/src/util.cpp:                             C++ source, ASCII text
data/clonalframe-1.2/src/util.h:                               C++ source, ASCII text
data/clonalframe-1.2/INSTALL:                                  ASCII text
data/clonalframe-1.2/COPYING:                                  ASCII text
data/clonalframe-1.2/debian/ClonalFrame.1:                     troff or preprocessor input, ASCII text
data/clonalframe-1.2/debian/README.Debian:                     ASCII text
data/clonalframe-1.2/debian/README.test:                       UTF-8 Unicode text
data/clonalframe-1.2/debian/changelog:                         ASCII text
data/clonalframe-1.2/debian/control:                           ASCII text
data/clonalframe-1.2/debian/copyright:                         UTF-8 Unicode text
data/clonalframe-1.2/debian/docs:                              ASCII text
data/clonalframe-1.2/debian/examples:                          ASCII text
data/clonalframe-1.2/debian/install:                           ASCII text
data/clonalframe-1.2/debian/manpages:                          ASCII text
data/clonalframe-1.2/debian/patches/01_gcc-4.6.patch:          unified diff output, ASCII text
data/clonalframe-1.2/debian/patches/glibc2.27.patch:           unified diff output, ASCII text
data/clonalframe-1.2/debian/patches/no_qtlibs.patch:           unified diff output, ASCII text
data/clonalframe-1.2/debian/patches/series:                    ASCII text
data/clonalframe-1.2/debian/rules:                             a /usr/bin/make -f script, ASCII text executable
data/clonalframe-1.2/debian/source/format:                     ASCII text
data/clonalframe-1.2/debian/tests/control:                     ASCII text
data/clonalframe-1.2/debian/tests/example.fasta:               ASCII text
data/clonalframe-1.2/debian/tests/run-unit-test:               Bourne-Again shell script, ASCII text executable
data/clonalframe-1.2/debian/upstream/metadata:                 ASCII text
data/clonalframe-1.2/debian/watch:                             ASCII text
data/clonalframe-1.2/.pc/.version:                             ASCII text
data/clonalframe-1.2/.pc/.quilt_patches:                       ASCII text
data/clonalframe-1.2/.pc/.quilt_series:                        ASCII text
data/clonalframe-1.2/.pc/applied-patches:                      ASCII text
data/clonalframe-1.2/.pc/01_gcc-4.6.patch/src/move_hidden.cpp: C++ source, ASCII text
data/clonalframe-1.2/.pc/no_qtlibs.patch/ClonalFrame.pro:      ASCII text
data/clonalframe-1.2/.pc/glibc2.27.patch/src/util.cpp:         C++ source, ASCII text
data/clonalframe-1.2/.pc/glibc2.27.patch/src/util.h:           C++ source, ASCII text
data/clonalframe-1.2/ClonalFrame.pro:                          ASCII text