data/covtobed-1.2.0+dfsg/.gitignore:                                               ASCII text
data/covtobed-1.2.0+dfsg/.travis.yml:                                              ASCII text
data/covtobed-1.2.0+dfsg/CONTRIBUTING.md:                                          ASCII text
data/covtobed-1.2.0+dfsg/Dockerfile:                                               ASCII text
data/covtobed-1.2.0+dfsg/LICENSE:                                                  ASCII text
data/covtobed-1.2.0+dfsg/OptionParser.cpp:                                         C++ source, UTF-8 Unicode text
data/covtobed-1.2.0+dfsg/OptionParser.h:                                           C++ source, UTF-8 Unicode text
data/covtobed-1.2.0+dfsg/README.md:                                                UTF-8 Unicode text, with very long lines
data/covtobed-1.2.0+dfsg/base.cpp:                                                 C++ source, ASCII text
data/covtobed-1.2.0+dfsg/benchmark/README.md:                                      UTF-8 Unicode text
data/covtobed-1.2.0+dfsg/benchmark/benchmark.png:                                  PNG image data, 350 x 347, 8-bit/color RGBA, non-interlaced
data/covtobed-1.2.0+dfsg/benchmark/benchmark_disk.sh:                              Bourne-Again shell script, ASCII text executable
data/covtobed-1.2.0+dfsg/benchmark/benchmark_stream.sh:                            Bourne-Again shell script, ASCII text executable
data/covtobed-1.2.0+dfsg/benchmark/covtobed_benchmark.png:                         PNG image data, 350 x 347, 8-bit/color RGBA, non-interlaced
data/covtobed-1.2.0+dfsg/benchmark/disk/benchmark2_example1.csv:                   CSV text
data/covtobed-1.2.0+dfsg/benchmark/disk/benchmark2_example1.md:                    UTF-8 Unicode text
data/covtobed-1.2.0+dfsg/benchmark/disk/benchmark2_example2.csv:                   CSV text
data/covtobed-1.2.0+dfsg/benchmark/disk/benchmark2_example2.md:                    UTF-8 Unicode text
data/covtobed-1.2.0+dfsg/benchmark/disk/benchmark_example1.csv:                    CSV text
data/covtobed-1.2.0+dfsg/benchmark/disk/benchmark_example1.md:                     UTF-8 Unicode text
data/covtobed-1.2.0+dfsg/benchmark/disk/benchmark_example2.csv:                    CSV text
data/covtobed-1.2.0+dfsg/benchmark/disk/benchmark_example2.md:                     UTF-8 Unicode text
data/covtobed-1.2.0+dfsg/benchmark/disk/benchmark_threads.md:                      UTF-8 Unicode text
data/covtobed-1.2.0+dfsg/benchmark/disk_file.sh:                                   Bourne-Again shell script, ASCII text executable
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr1.md:     UTF-8 Unicode text
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr10.md:    UTF-8 Unicode text
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr11.md:    UTF-8 Unicode text
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr12.md:    UTF-8 Unicode text
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr13.md:    UTF-8 Unicode text
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr14.md:    UTF-8 Unicode text
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr15.md:    UTF-8 Unicode text
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr16.md:    UTF-8 Unicode text
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr17.md:    UTF-8 Unicode text
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr18.md:    UTF-8 Unicode text
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr19.md:    UTF-8 Unicode text
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr2.md:     UTF-8 Unicode text
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr20.md:    UTF-8 Unicode text
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr21.md:    UTF-8 Unicode text
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr22.md:    UTF-8 Unicode text
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr3.md:     UTF-8 Unicode text
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr4.md:     UTF-8 Unicode text
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr5.md:     UTF-8 Unicode text
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr6.md:     UTF-8 Unicode text
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr7.md:     UTF-8 Unicode text
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr8.md:     UTF-8 Unicode text
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr9.md:     UTF-8 Unicode text
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chrEBV.md:   UTF-8 Unicode text
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chrM.md:     UTF-8 Unicode text
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chrX.md:     UTF-8 Unicode text
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chrY.md:     UTF-8 Unicode text
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_unmapped.md: UTF-8 Unicode text
data/covtobed-1.2.0+dfsg/benchmark/exome_size/disk_chr1.1000k.md:                  UTF-8 Unicode text
data/covtobed-1.2.0+dfsg/benchmark/exome_size/disk_chr1.100k.md:                   UTF-8 Unicode text
data/covtobed-1.2.0+dfsg/benchmark/exome_size/disk_chr1.10M.md:                    UTF-8 Unicode text
data/covtobed-1.2.0+dfsg/benchmark/exome_size/disk_chr1.150M.md:                   UTF-8 Unicode text
data/covtobed-1.2.0+dfsg/benchmark/exome_size/disk_chr1.2000k.md:                  UTF-8 Unicode text
data/covtobed-1.2.0+dfsg/benchmark/exome_size/disk_chr1.200k.md:                   UTF-8 Unicode text
data/covtobed-1.2.0+dfsg/benchmark/exome_size/disk_chr1.5000k.md:                  UTF-8 Unicode text
data/covtobed-1.2.0+dfsg/benchmark/exome_size/disk_chr1.500k.md:                   UTF-8 Unicode text
data/covtobed-1.2.0+dfsg/benchmark/exome_size/disk_chr1.50M.md:                    UTF-8 Unicode text
data/covtobed-1.2.0+dfsg/benchmark/exome_size/disk_chr1.md:                        UTF-8 Unicode text
data/covtobed-1.2.0+dfsg/benchmark/get_datasets.sh:                                Bourne-Again shell script, ASCII text executable
data/covtobed-1.2.0+dfsg/benchmark/sambamba.md:                                    UTF-8 Unicode text
data/covtobed-1.2.0+dfsg/benchmark/stream/README.md:                               UTF-8 Unicode text
data/covtobed-1.2.0+dfsg/benchmark/stream/benchmarkStream_example1.csv:            CSV text
data/covtobed-1.2.0+dfsg/benchmark/stream/benchmarkStream_example1.md:             UTF-8 Unicode text
data/covtobed-1.2.0+dfsg/benchmark/stream/benchmarkStream_example2.csv:            CSV text
data/covtobed-1.2.0+dfsg/benchmark/stream/benchmarkStream_example2.md:             UTF-8 Unicode text
data/covtobed-1.2.0+dfsg/benchmark/stream/benchmark_example1.csv:                  CSV text
data/covtobed-1.2.0+dfsg/benchmark/stream/benchmark_example1.md:                   UTF-8 Unicode text
data/covtobed-1.2.0+dfsg/benchmark/stream_file.sh:                                 Bourne-Again shell script, ASCII text executable
data/covtobed-1.2.0+dfsg/example_data/panel_01.bam:                                Blocked GNU Zip Format (BGZF; gzip compatible), block length 878
data/covtobed-1.2.0+dfsg/example_data/panel_02.bam:                                Blocked GNU Zip Format (BGZF; gzip compatible), block length 865
data/covtobed-1.2.0+dfsg/example_data/target.bed:                                  ASCII text
data/covtobed-1.2.0+dfsg/img/contig.png:                                           PNG image data, 900 x 137, 8-bit/color RGBA, non-interlaced
data/covtobed-1.2.0+dfsg/img/coverage_bam_to_bed.afdesign:                         data
data/covtobed-1.2.0+dfsg/img/coverage_bam_to_bed.png:                              PNG image data, 802 x 274, 8-bit/color RGBA, non-interlaced
data/covtobed-1.2.0+dfsg/img/coverage_track.png:                                   PNG image data, 640 x 320, 8-bit/color RGB, non-interlaced
data/covtobed-1.2.0+dfsg/img/covtobed-vignette.png:                                PNG image data, 802 x 274, 8-bit/color RGB, non-interlaced
data/covtobed-1.2.0+dfsg/img/ko.png:                                               PNG image data, 1419 x 884, 8-bit/color RGBA, non-interlaced
data/covtobed-1.2.0+dfsg/img/phy.png:                                              PNG image data, 856 x 258, 8-bit/color RGBA, non-interlaced
data/covtobed-1.2.0+dfsg/img/tradis.jpg:                                           JPEG image data, JFIF standard 1.01, aspect ratio, density 72x72, segment length 16, Exif Standard: [TIFF image data, big-endian, direntries=8, PhotometricIntepretation=RGB, orientation=upper-left, xresolution=110, yresolution=118, resolutionunit=2, software=Adobe Photoshop 21.0 (Windows), datetime=2020:02:12 14:37:34], baseline, precision 8, 754x319, components 3
data/covtobed-1.2.0+dfsg/img/upregulate.png:                                       PNG image data, 712 x 256, 8-bit/color RGBA, non-interlaced
data/covtobed-1.2.0+dfsg/interval.h:                                               C++ source, ASCII text
data/covtobed-1.2.0+dfsg/paper/paper.bib:                                          CSV text
data/covtobed-1.2.0+dfsg/paper/paper.md:                                           UTF-8 Unicode text, with very long lines
data/covtobed-1.2.0+dfsg/test/README.md:                                           ASCII text
data/covtobed-1.2.0+dfsg/test/del.bam:                                             Blocked GNU Zip Format (BGZF; gzip compatible), block length 178
data/covtobed-1.2.0+dfsg/test/demo.bam:                                            Blocked GNU Zip Format (BGZF; gzip compatible), block length 175
data/covtobed-1.2.0+dfsg/test/duplicates.bam:                                      Blocked GNU Zip Format (BGZF; gzip compatible), block length 9721
data/covtobed-1.2.0+dfsg/test/filtered.bam:                                        Blocked GNU Zip Format (BGZF; gzip compatible), block length 154
data/covtobed-1.2.0+dfsg/test/filtered_unsorted.bam:                               Blocked GNU Zip Format (BGZF; gzip compatible), block length 154
data/covtobed-1.2.0+dfsg/test/mock.bam:                                            Blocked GNU Zip Format (BGZF; gzip compatible), block length 178
data/covtobed-1.2.0+dfsg/test/mock.bed:                                            ASCII text
data/covtobed-1.2.0+dfsg/test/mp.bam:                                              Blocked GNU Zip Format (BGZF; gzip compatible), block length 196
data/covtobed-1.2.0+dfsg/test/output.bed:                                          ASCII text
data/covtobed-1.2.0+dfsg/test/output/README.md:                                    ASCII text
data/covtobed-1.2.0+dfsg/test/output/bedtools.bed:                                 ASCII text
data/covtobed-1.2.0+dfsg/test/output/covtobed.bed:                                 ASCII text
data/covtobed-1.2.0+dfsg/test/output/sambamba.txt:                                 ASCII text
data/covtobed-1.2.0+dfsg/test/test_cov.bam:                                        Blocked GNU Zip Format (BGZF; gzip compatible), block length 103
data/covtobed-1.2.0+dfsg/test/test.sh:                                             Bourne-Again shell script, ASCII text executable
data/covtobed-1.2.0+dfsg/debian/README.test:                                       UTF-8 Unicode text
data/covtobed-1.2.0+dfsg/debian/changelog:                                         ASCII text
data/covtobed-1.2.0+dfsg/debian/control:                                           ASCII text
data/covtobed-1.2.0+dfsg/debian/copyright:                                         UTF-8 Unicode text
data/covtobed-1.2.0+dfsg/debian/covtobed-examples.install:                         ASCII text
data/covtobed-1.2.0+dfsg/debian/covtobed.install:                                  ASCII text
data/covtobed-1.2.0+dfsg/debian/covtobed.manpages:                                 ASCII text
data/covtobed-1.2.0+dfsg/debian/mans/covtobed.1:                                   troff or preprocessor input, ASCII text
data/covtobed-1.2.0+dfsg/debian/patches/series:                                    ASCII text
data/covtobed-1.2.0+dfsg/debian/patches/test_use_system_installed_binary.patch:    unified diff output, ASCII text
data/covtobed-1.2.0+dfsg/debian/rules:                                             a /usr/bin/make -f script, ASCII text executable
data/covtobed-1.2.0+dfsg/debian/salsa-ci.yml:                                      ASCII text
data/covtobed-1.2.0+dfsg/debian/source/format:                                     ASCII text
data/covtobed-1.2.0+dfsg/debian/tests/control:                                     ASCII text
data/covtobed-1.2.0+dfsg/debian/tests/run-unit-test:                               Bourne-Again shell script, ASCII text executable
data/covtobed-1.2.0+dfsg/debian/upstream/metadata:                                 ASCII text
data/covtobed-1.2.0+dfsg/debian/watch:                                             ASCII text
data/covtobed-1.2.0+dfsg/.pc/.version:                                             ASCII text
data/covtobed-1.2.0+dfsg/.pc/.quilt_patches:                                       ASCII text
data/covtobed-1.2.0+dfsg/.pc/.quilt_series:                                        ASCII text
data/covtobed-1.2.0+dfsg/.pc/applied-patches:                                      ASCII text
data/covtobed-1.2.0+dfsg/.pc/test_use_system_installed_binary.patch/test/test.sh:  Bourne-Again shell script, ASCII text executable