data/cwlformat-2020.05.19/.github/workflows/tests.yml:                                                                                               ASCII text
data/cwlformat-2020.05.19/LICENSE:                                                                                                                   ASCII text
data/cwlformat-2020.05.19/MANIFEST.in:                                                                                                               ASCII text, with no line terminators
data/cwlformat-2020.05.19/Readme.md:                                                                                                                 Python script, ASCII text executable
data/cwlformat-2020.05.19/cwlformat/__init__.py:                                                                                                     empty
data/cwlformat-2020.05.19/cwlformat/explode.py:                                                                                                      Python script, ASCII text executable
data/cwlformat-2020.05.19/cwlformat/formatter.py:                                                                                                    Python script, ASCII text executable
data/cwlformat-2020.05.19/cwlformat/keyorder.yml:                                                                                                    ASCII text
data/cwlformat-2020.05.19/cwlformat/version.py:                                                                                                      ASCII text
data/cwlformat-2020.05.19/setup.py:                                                                                                                  Python script, ASCII text executable
data/cwlformat-2020.05.19/tests/cwl/expected-exploded-atac-seq.cwl:                                                                                  a /usr/bin/env cwl-runner script, ASCII text executable
data/cwlformat-2020.05.19/tests/cwl/expected-exploded-atac-seq.cwl.steps/map.cwl:                                                                    ASCII text
data/cwlformat-2020.05.19/tests/cwl/expected-exploded-atac-seq.cwl.steps/map.cwl.steps/bam_idxstats.cwl:                                             ASCII text
data/cwlformat-2020.05.19/tests/cwl/expected-exploded-atac-seq.cwl.steps/map.cwl.steps/bowtie-se.cwl:                                                ASCII text
data/cwlformat-2020.05.19/tests/cwl/expected-exploded-atac-seq.cwl.steps/map.cwl.steps/execute_pcr_bottleneck_coef.cwl:                              ASCII text
data/cwlformat-2020.05.19/tests/cwl/expected-exploded-atac-seq.cwl.steps/map.cwl.steps/execute_pcr_bottleneck_coef.cwl.steps/bedtools_genomecov.cwl: ASCII text
data/cwlformat-2020.05.19/tests/cwl/expected-exploded-atac-seq.cwl.steps/map.cwl.steps/execute_pcr_bottleneck_coef.cwl.steps/compute_pbc.cwl:        ASCII text
data/cwlformat-2020.05.19/tests/cwl/expected-exploded-atac-seq.cwl.steps/map.cwl.steps/extract_basename_1.cwl:                                       ASCII text
data/cwlformat-2020.05.19/tests/cwl/expected-exploded-atac-seq.cwl.steps/map.cwl.steps/extract_basename_2.cwl:                                       ASCII text
data/cwlformat-2020.05.19/tests/cwl/expected-exploded-atac-seq.cwl.steps/map.cwl.steps/filter-unmapped.cwl:                                          ASCII text
data/cwlformat-2020.05.19/tests/cwl/expected-exploded-atac-seq.cwl.steps/map.cwl.steps/filtered2sorted.cwl:                                          ASCII text
data/cwlformat-2020.05.19/tests/cwl/expected-exploded-atac-seq.cwl.steps/map.cwl.steps/index_bams.cwl:                                               ASCII text
data/cwlformat-2020.05.19/tests/cwl/expected-exploded-atac-seq.cwl.steps/map.cwl.steps/index_dedup_bams.cwl:                                         ASCII text
data/cwlformat-2020.05.19/tests/cwl/expected-exploded-atac-seq.cwl.steps/map.cwl.steps/index_dups_marked_bams.cwl:                                   ASCII text
data/cwlformat-2020.05.19/tests/cwl/expected-exploded-atac-seq.cwl.steps/map.cwl.steps/index_filtered_bam.cwl:                                       ASCII text
data/cwlformat-2020.05.19/tests/cwl/expected-exploded-atac-seq.cwl.steps/map.cwl.steps/mapped_filtered_reads_count.cwl:                              ASCII text
data/cwlformat-2020.05.19/tests/cwl/expected-exploded-atac-seq.cwl.steps/map.cwl.steps/mapped_reads_count.cwl:                                       ASCII text
data/cwlformat-2020.05.19/tests/cwl/expected-exploded-atac-seq.cwl.steps/map.cwl.steps/mark_duplicates.cwl:                                          ASCII text
data/cwlformat-2020.05.19/tests/cwl/expected-exploded-atac-seq.cwl.steps/map.cwl.steps/percent_mitochondrial_reads.cwl:                              ASCII text
data/cwlformat-2020.05.19/tests/cwl/expected-exploded-atac-seq.cwl.steps/map.cwl.steps/percent_uniq_reads.cwl:                                       ASCII text
data/cwlformat-2020.05.19/tests/cwl/expected-exploded-atac-seq.cwl.steps/map.cwl.steps/preseq-c-curve.cwl:                                           ASCII text
data/cwlformat-2020.05.19/tests/cwl/expected-exploded-atac-seq.cwl.steps/map.cwl.steps/remove_duplicates.cwl:                                        ASCII text
data/cwlformat-2020.05.19/tests/cwl/expected-exploded-atac-seq.cwl.steps/map.cwl.steps/sam2bam.cwl:                                                  ASCII text
data/cwlformat-2020.05.19/tests/cwl/expected-exploded-atac-seq.cwl.steps/map.cwl.steps/sort_bams.cwl:                                                ASCII text
data/cwlformat-2020.05.19/tests/cwl/expected-exploded-atac-seq.cwl.steps/map.cwl.steps/sort_dedup_bams.cwl:                                          ASCII text
data/cwlformat-2020.05.19/tests/cwl/expected-exploded-atac-seq.cwl.steps/map.cwl.steps/sort_dups_marked_bams.cwl:                                    ASCII text
data/cwlformat-2020.05.19/tests/cwl/expected-exploded-atac-seq.cwl.steps/peak_call.cwl:                                                              ASCII text
data/cwlformat-2020.05.19/tests/cwl/expected-exploded-atac-seq.cwl.steps/peak_call.cwl.steps/count-peaks.cwl:                                        ASCII text
data/cwlformat-2020.05.19/tests/cwl/expected-exploded-atac-seq.cwl.steps/peak_call.cwl.steps/count-reads-filtered.cwl:                               ASCII text
data/cwlformat-2020.05.19/tests/cwl/expected-exploded-atac-seq.cwl.steps/peak_call.cwl.steps/extract-count-reads-in-peaks.cwl:                       ASCII text
data/cwlformat-2020.05.19/tests/cwl/expected-exploded-atac-seq.cwl.steps/peak_call.cwl.steps/extract-peak-frag-length.cwl:                           ASCII text
data/cwlformat-2020.05.19/tests/cwl/expected-exploded-atac-seq.cwl.steps/peak_call.cwl.steps/filter-reads-in-peaks.cwl:                              ASCII text
data/cwlformat-2020.05.19/tests/cwl/expected-exploded-atac-seq.cwl.steps/peak_call.cwl.steps/peak-calling.cwl:                                       ASCII text, with very long lines
data/cwlformat-2020.05.19/tests/cwl/expected-exploded-atac-seq.cwl.steps/peak_call.cwl.steps/peaks-bed-to-bigbed.cwl:                                ASCII text
data/cwlformat-2020.05.19/tests/cwl/expected-exploded-atac-seq.cwl.steps/peak_call.cwl.steps/spp.cwl:                                                ASCII text
data/cwlformat-2020.05.19/tests/cwl/expected-exploded-atac-seq.cwl.steps/peak_call.cwl.steps/trunk-peak-score.cwl:                                   ASCII text
data/cwlformat-2020.05.19/tests/cwl/expected-exploded-atac-seq.cwl.steps/qc.cwl:                                                                     ASCII text
data/cwlformat-2020.05.19/tests/cwl/expected-exploded-atac-seq.cwl.steps/qc.cwl.steps/compare_read_counts.cwl:                                       ASCII text
data/cwlformat-2020.05.19/tests/cwl/expected-exploded-atac-seq.cwl.steps/qc.cwl.steps/count_fastqc_reads.cwl:                                        ASCII text
data/cwlformat-2020.05.19/tests/cwl/expected-exploded-atac-seq.cwl.steps/qc.cwl.steps/count_raw_reads.cwl:                                           ASCII text
data/cwlformat-2020.05.19/tests/cwl/expected-exploded-atac-seq.cwl.steps/qc.cwl.steps/extract_basename.cwl:                                          ASCII text
data/cwlformat-2020.05.19/tests/cwl/expected-exploded-atac-seq.cwl.steps/qc.cwl.steps/extract_fastqc_data.cwl:                                       ASCII text
data/cwlformat-2020.05.19/tests/cwl/expected-exploded-atac-seq.cwl.steps/qc.cwl.steps/fastqc.cwl:                                                    ASCII text
data/cwlformat-2020.05.19/tests/cwl/expected-exploded-atac-seq.cwl.steps/qc.cwl.steps/overrepresented_sequence_extract.cwl:                          ASCII text
data/cwlformat-2020.05.19/tests/cwl/expected-exploded-atac-seq.cwl.steps/quant.cwl:                                                                  ASCII text
data/cwlformat-2020.05.19/tests/cwl/expected-exploded-atac-seq.cwl.steps/quant.cwl.steps/bamcoverage.cwl:                                            UTF-8 Unicode text, with very long lines
data/cwlformat-2020.05.19/tests/cwl/expected-exploded-atac-seq.cwl.steps/quant.cwl.steps/bdg2bw-raw.cwl:                                             ASCII text
data/cwlformat-2020.05.19/tests/cwl/expected-exploded-atac-seq.cwl.steps/quant.cwl.steps/bedsort_genomecov.cwl:                                      ASCII text
data/cwlformat-2020.05.19/tests/cwl/expected-exploded-atac-seq.cwl.steps/quant.cwl.steps/bedtools_genomecov.cwl:                                     ASCII text
data/cwlformat-2020.05.19/tests/cwl/expected-exploded-atac-seq.cwl.steps/trimm.cwl:                                                                  ASCII text
data/cwlformat-2020.05.19/tests/cwl/expected-exploded-atac-seq.cwl.steps/trimm.cwl.steps/count_fastq_reads.cwl:                                      ASCII text
data/cwlformat-2020.05.19/tests/cwl/expected-exploded-atac-seq.cwl.steps/trimm.cwl.steps/extract_basename.cwl:                                       ASCII text
data/cwlformat-2020.05.19/tests/cwl/expected-exploded-atac-seq.cwl.steps/trimm.cwl.steps/trimmomatic.cwl:                                            ASCII text
data/cwlformat-2020.05.19/tests/cwl/formatted-atac-seq-pipeline.cwl:                                                                                 a /usr/bin/env cwl-runner script, UTF-8 Unicode text executable, with very long lines
data/cwlformat-2020.05.19/tests/cwl/formatted-commented.cwl:                                                                                         a /usr/bin/env cwl-runner script, ASCII text executable
data/cwlformat-2020.05.19/tests/cwl/formatted-fragment.cwl:                                                                                          a /usr/bin/env cwl-runner script, ASCII text executable
data/cwlformat-2020.05.19/tests/cwl/formatted-no-comment.cwl:                                                                                        a /usr/bin/env cwl-runner script, ASCII text executable
data/cwlformat-2020.05.19/tests/cwl/formatted-other-runner.cwl:                                                                                      a /usr/bin/env other-runner script, ASCII text executable
data/cwlformat-2020.05.19/tests/cwl/original-atac-seq-pipeline.json:                                                                                 ASCII text, with very long lines
data/cwlformat-2020.05.19/tests/cwl/original-commented.cwl:                                                                                          ASCII text
data/cwlformat-2020.05.19/tests/cwl/original-fragment.json:                                                                                          JSON data
data/cwlformat-2020.05.19/tests/cwl/original-no-comment.cwl:                                                                                         ASCII text
data/cwlformat-2020.05.19/tests/cwl/original-other-runner.cwl:                                                                                       a /usr/bin/env other-runner script, ASCII text executable
data/cwlformat-2020.05.19/tests/test_battery.py:                                                                                                     Python script, ASCII text executable
data/cwlformat-2020.05.19/tests/test_explode.py:                                                                                                     Python script, ASCII text executable
data/cwlformat-2020.05.19/debian/changelog:                                                                                                          ASCII text
data/cwlformat-2020.05.19/debian/control:                                                                                                            ASCII text
data/cwlformat-2020.05.19/debian/copyright:                                                                                                          ASCII text
data/cwlformat-2020.05.19/debian/docs:                                                                                                               ASCII text
data/cwlformat-2020.05.19/debian/rules:                                                                                                              a /usr/bin/make -f script, ASCII text executable
data/cwlformat-2020.05.19/debian/salsa-ci.yml:                                                                                                       ASCII text
data/cwlformat-2020.05.19/debian/source/format:                                                                                                      ASCII text
data/cwlformat-2020.05.19/debian/tests/control:                                                                                                      ASCII text
data/cwlformat-2020.05.19/debian/tests/run-unit-test:                                                                                                Bourne-Again shell script, ASCII text executable
data/cwlformat-2020.05.19/debian/upstream/metadata:                                                                                                  ASCII text
data/cwlformat-2020.05.19/debian/watch:                                                                                                              ASCII text
data/cwlformat-2020.05.19/.pc/.version:                                                                                                              ASCII text
data/cwlformat-2020.05.19/.pc/.quilt_patches:                                                                                                        ASCII text
data/cwlformat-2020.05.19/.pc/.quilt_series:                                                                                                         ASCII text
data/cwlformat-2020.05.19/.pc/applied-patches:                                                                                                       empty