data/genometester-4.0+git20200511.91cecb5+dfsg/.gitignore: ASCII text, with CRLF line terminators data/genometester-4.0+git20200511.91cecb5+dfsg/LICENSE.txt: ASCII text data/genometester-4.0+git20200511.91cecb5+dfsg/README.FastGT.md: UTF-8 Unicode text data/genometester-4.0+git20200511.91cecb5+dfsg/README.GenomeTester4.md: UTF-8 Unicode text data/genometester-4.0+git20200511.91cecb5+dfsg/README.md: UTF-8 Unicode text data/genometester-4.0+git20200511.91cecb5+dfsg/scripts/MakeIntersection.pl: Perl script text executable data/genometester-4.0+git20200511.91cecb5+dfsg/scripts/MakeUnion.pl: Perl script text executable data/genometester-4.0+git20200511.91cecb5+dfsg/scripts/generate_vcf.pl: Perl script text executable data/genometester-4.0+git20200511.91cecb5+dfsg/scripts/repeats/_filter_collated.pl: Perl script text executable data/genometester-4.0+git20200511.91cecb5+dfsg/scripts/repeats/_filter_final.pl: Perl script text executable data/genometester-4.0+git20200511.91cecb5+dfsg/scripts/repeats/_unique.pl: Perl script text executable data/genometester-4.0+git20200511.91cecb5+dfsg/scripts/repeats/collate_repeats.pl: Perl script text executable data/genometester-4.0+git20200511.91cecb5+dfsg/scripts/repeats/find_regions.pl: Perl script text executable data/genometester-4.0+git20200511.91cecb5+dfsg/src/.depend: empty data/genometester-4.0+git20200511.91cecb5+dfsg/src/Makefile.gmer: makefile script, ASCII text data/genometester-4.0+git20200511.91cecb5+dfsg/src/binomial.c: C source, ASCII text data/genometester-4.0+git20200511.91cecb5+dfsg/src/binomial.h: C source, ASCII text data/genometester-4.0+git20200511.91cecb5+dfsg/src/buffer.c: C source, UTF-8 Unicode text data/genometester-4.0+git20200511.91cecb5+dfsg/src/buffer.h: C source, ASCII text data/genometester-4.0+git20200511.91cecb5+dfsg/src/common.c: C source, ASCII text data/genometester-4.0+git20200511.91cecb5+dfsg/src/common.h: C source, ASCII text data/genometester-4.0+git20200511.91cecb5+dfsg/src/database.c: C source, ASCII text data/genometester-4.0+git20200511.91cecb5+dfsg/src/database.h: C source, ASCII text data/genometester-4.0+git20200511.91cecb5+dfsg/src/distro.c: C source, ASCII text data/genometester-4.0+git20200511.91cecb5+dfsg/src/fasta.c: C source, ASCII text data/genometester-4.0+git20200511.91cecb5+dfsg/src/fasta.h: C source, ASCII text data/genometester-4.0+git20200511.91cecb5+dfsg/src/gassembler.c: C source, ASCII text data/genometester-4.0+git20200511.91cecb5+dfsg/src/gdistribution.c: C source, ASCII text data/genometester-4.0+git20200511.91cecb5+dfsg/src/genotypes.c: C source, UTF-8 Unicode text data/genometester-4.0+git20200511.91cecb5+dfsg/src/genotypes.h: C source, ASCII text data/genometester-4.0+git20200511.91cecb5+dfsg/src/glistcompare.c: C source, ASCII text data/genometester-4.0+git20200511.91cecb5+dfsg/src/glistmaker.c: C source, ASCII text data/genometester-4.0+git20200511.91cecb5+dfsg/src/glistmaker2.c: C source, ASCII text data/genometester-4.0+git20200511.91cecb5+dfsg/src/glistquery.c: C source, ASCII text data/genometester-4.0+git20200511.91cecb5+dfsg/src/gmasker.c: C source, UTF-8 Unicode text data/genometester-4.0+git20200511.91cecb5+dfsg/src/gmer_caller.c: C source, UTF-8 Unicode text data/genometester-4.0+git20200511.91cecb5+dfsg/src/gmer_counter.c: C source, ASCII text data/genometester-4.0+git20200511.91cecb5+dfsg/src/index.c: C source, ASCII text data/genometester-4.0+git20200511.91cecb5+dfsg/src/index.h: C source, ASCII text data/genometester-4.0+git20200511.91cecb5+dfsg/src/iotest.c: C source, ASCII text data/genometester-4.0+git20200511.91cecb5+dfsg/src/matrix.c: C source, ASCII text data/genometester-4.0+git20200511.91cecb5+dfsg/src/matrix.h: C source, ASCII text data/genometester-4.0+git20200511.91cecb5+dfsg/src/queue.c: C source, ASCII text data/genometester-4.0+git20200511.91cecb5+dfsg/src/queue.h: C source, ASCII text data/genometester-4.0+git20200511.91cecb5+dfsg/src/sequence-file.c: C source, ASCII text data/genometester-4.0+git20200511.91cecb5+dfsg/src/sequence-file.h: C source, ASCII text data/genometester-4.0+git20200511.91cecb5+dfsg/src/sequence.c: C source, ASCII text data/genometester-4.0+git20200511.91cecb5+dfsg/src/sequence.h: C source, ASCII text data/genometester-4.0+git20200511.91cecb5+dfsg/src/simplex.c: C source, ASCII text data/genometester-4.0+git20200511.91cecb5+dfsg/src/simplex.h: C source, ASCII text data/genometester-4.0+git20200511.91cecb5+dfsg/src/thread-pool.c: C source, ASCII text data/genometester-4.0+git20200511.91cecb5+dfsg/src/thread-pool.h: C source, ASCII text data/genometester-4.0+git20200511.91cecb5+dfsg/src/trie.c: C source, ASCII text data/genometester-4.0+git20200511.91cecb5+dfsg/src/trie.h: C source, ASCII text data/genometester-4.0+git20200511.91cecb5+dfsg/src/utils.c: C source, ASCII text data/genometester-4.0+git20200511.91cecb5+dfsg/src/utils.h: C source, ASCII text data/genometester-4.0+git20200511.91cecb5+dfsg/src/wordmap.c: C source, ASCII text data/genometester-4.0+git20200511.91cecb5+dfsg/src/wordmap.h: C source, ASCII text data/genometester-4.0+git20200511.91cecb5+dfsg/src/wordtable.c: C source, ASCII text data/genometester-4.0+git20200511.91cecb5+dfsg/src/wordtable.h: C source, ASCII text data/genometester-4.0+git20200511.91cecb5+dfsg/src/Makefile: ASCII text data/genometester-4.0+git20200511.91cecb5+dfsg/debian/README.test: ASCII text data/genometester-4.0+git20200511.91cecb5+dfsg/debian/TODO: ASCII text data/genometester-4.0+git20200511.91cecb5+dfsg/debian/changelog: ASCII text data/genometester-4.0+git20200511.91cecb5+dfsg/debian/control: ASCII text data/genometester-4.0+git20200511.91cecb5+dfsg/debian/copyright: ASCII text data/genometester-4.0+git20200511.91cecb5+dfsg/debian/docs: ASCII text data/genometester-4.0+git20200511.91cecb5+dfsg/debian/install: ASCII text data/genometester-4.0+git20200511.91cecb5+dfsg/debian/man/glistcompare.1: troff or preprocessor input, ASCII text data/genometester-4.0+git20200511.91cecb5+dfsg/debian/man/glistmaker.1: troff or preprocessor input, ASCII text data/genometester-4.0+git20200511.91cecb5+dfsg/debian/man/glistquery.1: troff or preprocessor input, ASCII text data/genometester-4.0+git20200511.91cecb5+dfsg/debian/man/gmer_caller.1: troff or preprocessor input, ASCII text data/genometester-4.0+git20200511.91cecb5+dfsg/debian/man/gmer_counter.1: troff or preprocessor input, ASCII text data/genometester-4.0+git20200511.91cecb5+dfsg/debian/manpages: ASCII text data/genometester-4.0+git20200511.91cecb5+dfsg/debian/patches/add_debug_symbols.patch: unified diff output, ASCII text data/genometester-4.0+git20200511.91cecb5+dfsg/debian/patches/hardening.patch: unified diff output, ASCII text data/genometester-4.0+git20200511.91cecb5+dfsg/debian/patches/series: ASCII text data/genometester-4.0+git20200511.91cecb5+dfsg/debian/rules: a /usr/bin/make -f script, ASCII text executable data/genometester-4.0+git20200511.91cecb5+dfsg/debian/salsa-ci.yml: ASCII text data/genometester-4.0+git20200511.91cecb5+dfsg/debian/source/format: ASCII text data/genometester-4.0+git20200511.91cecb5+dfsg/debian/source/include-binaries: ASCII text data/genometester-4.0+git20200511.91cecb5+dfsg/debian/tests/control: ASCII text data/genometester-4.0+git20200511.91cecb5+dfsg/debian/tests/run-unit-test: POSIX shell script, ASCII text executable data/genometester-4.0+git20200511.91cecb5+dfsg/debian/tests/test-data/Ccr.fa.gz: gzip compressed data, was "/nfs/nobackup/ensemblgenomes/dstaines/workspace/ftp_pipeline/ftp_site/release-35/bacteria/fasta/bacteria_40_collection/candidat", last modified: Tue Feb 28 17:23:16 2017, from Unix, original size modulo 2^32 176990 data/genometester-4.0+git20200511.91cecb5+dfsg/debian/tests/test-data/Mg.fa.gz: gzip compressed data, was "/nfs/nobackup/ensemblgenomes/dstaines/workspace/ftp_pipeline/ftp_site/release-35/bacteria/fasta/bacteria_13_collection/mycoplas", last modified: Fri Mar 3 12:04:00 2017, from Unix, original size modulo 2^32 589818 data/genometester-4.0+git20200511.91cecb5+dfsg/debian/upstream/metadata: UTF-8 Unicode text data/genometester-4.0+git20200511.91cecb5+dfsg/debian/watch: ASCII text data/genometester-4.0+git20200511.91cecb5+dfsg/.pc/.version: ASCII text data/genometester-4.0+git20200511.91cecb5+dfsg/.pc/.quilt_patches: ASCII text data/genometester-4.0+git20200511.91cecb5+dfsg/.pc/.quilt_series: ASCII text data/genometester-4.0+git20200511.91cecb5+dfsg/.pc/applied-patches: ASCII text data/genometester-4.0+git20200511.91cecb5+dfsg/.pc/add_debug_symbols.patch/src/Makefile: ASCII text data/genometester-4.0+git20200511.91cecb5+dfsg/.pc/hardening.patch/src/Makefile: ASCII text