Flawfinder version 2.0.10, (C) 2001-2019 David A. Wheeler.
Number of rules (primarily dangerous function names) in C/C++ ruleset: 223
Examining data/adun.app-0.81/ExternalPackages/StepTalk/Frameworks/StepTalk/NSInvocation+additions.h
Examining data/adun.app-0.81/ExternalPackages/StepTalk/Frameworks/StepTalk/NSNumber+additions.h
Examining data/adun.app-0.81/ExternalPackages/StepTalk/Frameworks/StepTalk/NSObject+CocoaAdditions.h
Examining data/adun.app-0.81/ExternalPackages/StepTalk/Frameworks/StepTalk/NSObject+additions.h
Examining data/adun.app-0.81/ExternalPackages/StepTalk/Frameworks/StepTalk/NSUserDefaults+CocoaAdditions.h
Examining data/adun.app-0.81/ExternalPackages/StepTalk/Frameworks/StepTalk/OSXObjcRuntime+Additions.h
Examining data/adun.app-0.81/ExternalPackages/StepTalk/Frameworks/StepTalk/ObjcRuntimeSupport.h
Examining data/adun.app-0.81/ExternalPackages/StepTalk/Frameworks/StepTalk/STActor.h
Examining data/adun.app-0.81/ExternalPackages/StepTalk/Frameworks/StepTalk/STBehaviourInfo.h
Examining data/adun.app-0.81/ExternalPackages/StepTalk/Frameworks/StepTalk/STBundleInfo.h
Examining data/adun.app-0.81/ExternalPackages/StepTalk/Frameworks/StepTalk/STClassInfo.h
Examining data/adun.app-0.81/ExternalPackages/StepTalk/Frameworks/StepTalk/STCocoa.h
Examining data/adun.app-0.81/ExternalPackages/StepTalk/Frameworks/StepTalk/STCompat.h
Examining data/adun.app-0.81/ExternalPackages/StepTalk/Frameworks/StepTalk/STContext.h
Examining data/adun.app-0.81/ExternalPackages/StepTalk/Frameworks/StepTalk/STConversation.h
Examining data/adun.app-0.81/ExternalPackages/StepTalk/Frameworks/StepTalk/STEngine.h
Examining data/adun.app-0.81/ExternalPackages/StepTalk/Frameworks/StepTalk/STEnvironment.h
Examining data/adun.app-0.81/ExternalPackages/StepTalk/Frameworks/StepTalk/STEnvironmentDescription.h
Examining data/adun.app-0.81/ExternalPackages/StepTalk/Frameworks/StepTalk/STEnvironmentServer.h
Examining data/adun.app-0.81/ExternalPackages/StepTalk/Frameworks/StepTalk/STExterns.h
Examining data/adun.app-0.81/ExternalPackages/StepTalk/Frameworks/StepTalk/STFileScript.h
Examining data/adun.app-0.81/ExternalPackages/StepTalk/Frameworks/StepTalk/STLanguageManager.h
Examining data/adun.app-0.81/ExternalPackages/StepTalk/Frameworks/StepTalk/STMethod.h
Examining data/adun.app-0.81/ExternalPackages/StepTalk/Frameworks/StepTalk/STObjCRuntime.h
Examining data/adun.app-0.81/ExternalPackages/StepTalk/Frameworks/StepTalk/STObjectReference.h
Examining data/adun.app-0.81/ExternalPackages/StepTalk/Frameworks/StepTalk/STRemoteConversation.h
Examining data/adun.app-0.81/ExternalPackages/StepTalk/Frameworks/StepTalk/STResourceManager.h
Examining data/adun.app-0.81/ExternalPackages/StepTalk/Frameworks/StepTalk/STScript.h
Examining data/adun.app-0.81/ExternalPackages/StepTalk/Frameworks/StepTalk/STScriptObject.h
Examining data/adun.app-0.81/ExternalPackages/StepTalk/Frameworks/StepTalk/STScripting.h
Examining data/adun.app-0.81/ExternalPackages/StepTalk/Frameworks/StepTalk/STScriptsManager.h
Examining data/adun.app-0.81/ExternalPackages/StepTalk/Frameworks/StepTalk/STSelector.h
Examining data/adun.app-0.81/ExternalPackages/StepTalk/Frameworks/StepTalk/STStructure.h
Examining data/adun.app-0.81/ExternalPackages/StepTalk/Frameworks/StepTalk/STUndefinedObject.h
Examining data/adun.app-0.81/ExternalPackages/StepTalk/Frameworks/StepTalk/StepTalk.h
Examining data/adun.app-0.81/ExternalPackages/StepTalk/Frameworks/StepTalk/StepTalkScriptingInfo.h
Examining data/adun.app-0.81/ExternalPackages/StepTalk/Languages/StepTalkSmalltalk/Externs.h
Examining data/adun.app-0.81/ExternalPackages/StepTalk/Languages/StepTalkSmalltalk/NSArray+additions.h
Examining data/adun.app-0.81/ExternalPackages/StepTalk/Languages/StepTalkSmalltalk/NSNumber+additions.h
Examining data/adun.app-0.81/ExternalPackages/StepTalk/Languages/StepTalkSmalltalk/NSObject+additions.h
Examining data/adun.app-0.81/ExternalPackages/StepTalk/Languages/StepTalkSmalltalk/NSString+additions.h
Examining data/adun.app-0.81/ExternalPackages/StepTalk/Languages/StepTalkSmalltalk/STBlock.h
Examining data/adun.app-0.81/ExternalPackages/StepTalk/Languages/StepTalkSmalltalk/STBlockContext.h
Examining data/adun.app-0.81/ExternalPackages/StepTalk/Languages/StepTalkSmalltalk/STBytecodeInterpreter.h
Examining data/adun.app-0.81/ExternalPackages/StepTalk/Languages/StepTalkSmalltalk/STBytecodes.h
Examining data/adun.app-0.81/ExternalPackages/StepTalk/Languages/StepTalkSmalltalk/STCompiledCode.h
Examining data/adun.app-0.81/ExternalPackages/StepTalk/Languages/StepTalkSmalltalk/STCompiledMethod.h
Examining data/adun.app-0.81/ExternalPackages/StepTalk/Languages/StepTalkSmalltalk/STCompiledScript.h
Examining data/adun.app-0.81/ExternalPackages/StepTalk/Languages/StepTalkSmalltalk/STCompiler.h
Examining data/adun.app-0.81/ExternalPackages/StepTalk/Languages/StepTalkSmalltalk/STCompilerUtils.h
Examining data/adun.app-0.81/ExternalPackages/StepTalk/Languages/StepTalkSmalltalk/STExecutionContext.h
Examining data/adun.app-0.81/ExternalPackages/StepTalk/Languages/StepTalkSmalltalk/STGrammar.m.h
Examining data/adun.app-0.81/ExternalPackages/StepTalk/Languages/StepTalkSmalltalk/STLiterals.h
Examining data/adun.app-0.81/ExternalPackages/StepTalk/Languages/StepTalkSmalltalk/STMessage.h
Examining data/adun.app-0.81/ExternalPackages/StepTalk/Languages/StepTalkSmalltalk/STMethodContext.h
Examining data/adun.app-0.81/ExternalPackages/StepTalk/Languages/StepTalkSmalltalk/STSelector+additions.h
Examining data/adun.app-0.81/ExternalPackages/StepTalk/Languages/StepTalkSmalltalk/STSmalltalkScriptObject.h
Examining data/adun.app-0.81/ExternalPackages/StepTalk/Languages/StepTalkSmalltalk/STSourceReader.h
Examining data/adun.app-0.81/ExternalPackages/StepTalk/Languages/StepTalkSmalltalk/STStack.h
Examining data/adun.app-0.81/ExternalPackages/StepTalk/Languages/StepTalkSmalltalk/STTokenTypes.h
Examining data/adun.app-0.81/ExternalPackages/StepTalk/Languages/StepTalkSmalltalk/SmalltalkEngine.h
Examining data/adun.app-0.81/ExternalPackages/StepTalk/Modules/AppKit/Functions.h
Examining data/adun.app-0.81/ExternalPackages/StepTalk/Modules/AppKit/NSApplication+additions.h
Examining data/adun.app-0.81/ExternalPackages/StepTalk/Modules/AppKit/STAppKitModule.h
Examining data/adun.app-0.81/ExternalPackages/StepTalk/Modules/Foundation/Functions.h
Examining data/adun.app-0.81/ExternalPackages/StepTalk/Modules/ObjectiveC/NSObject+objcadditions.h
Examining data/adun.app-0.81/ExternalPackages/StepTalk/Modules/ObjectiveC/ObjectiveCModule.h
Examining data/adun.app-0.81/ExternalPackages/StepTalk/Modules/ObjectiveC/ObjectiveCRuntime.h
Examining data/adun.app-0.81/ExternalPackages/StepTalk/Modules/SimpleTranscript/SimpleTranscript.h
Examining data/adun.app-0.81/ExternalPackages/StepTalk/Modules/SimpleTranscript/SimpleTranscriptModule.h
Examining data/adun.app-0.81/Kernel/AdunKernel/CoreAdditions/Commands/AdEndSimulationCommand.h
Examining data/adun.app-0.81/Kernel/AdunKernel/CoreAdditions/Commands/AdStatusCommand.h
Examining data/adun.app-0.81/Kernel/AdunKernel/CoreAdditions/AdSimulationStorageNode.h
Examining data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdCommandInterface.h
Examining data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdController.h
Examining data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdCoreAdditions.h
Examining data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdCoreCommand.h
Examining data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdDataSources.h
Examining data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdForceFieldTerm.h
Examining data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdFrameworkFunctions.h
Examining data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdGridDelegate.h
Examining data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdIndexSetConversions.h
Examining data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdMatrixModification.h
Examining data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdMemento.h
Examining data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdServerInterface.h
Examining data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunAmberForceField.h
Examining data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunBerendsenThermostat.h
Examining data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunCellListHandler.h
Examining data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunCharmmForceField.h
Examining data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunCheckpointManager.h
Examining data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunConfigurationGenerator.h
Examining data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunContainerDataSource.h
Examining data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunController.h
Examining data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunCore.h
Examining data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunCuboidBox.h
Examining data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunDataMatrix.h
Examining data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunDataSet.h
Examining data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunDataSource.h
Examining data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunDynamics.h
Examining data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunElementSelection.h
Examining data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunEllipsoidBox.h
Examining data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunEnzymixForceField.h
Examining data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunForceField.h
Examining data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunForceFieldCollection.h
Examining data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunGRFNonbondedTerm.h
Examining data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunGrid.h
Examining data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunHarmonicConstraintTerm.h
Examining data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunIOManager.h
Examining data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunInteractionSystem.h
Examining data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunKernel.h
Examining data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunLangevinThermostat.h
Examining data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunLinkedList.h
Examining data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunListHandler.h
Examining data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunMatrixStructureCoder.h
Examining data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunMemoryManager.h
Examining data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunMinimiser.h
Examining data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunMolecularMechanicsForceField.h
Examining data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunMoleculeCavity.h
Examining data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunMultithreadedNonbondedTerm.h
Examining data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunNonbondedTerm.h
Examining data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunPureNonbondedTerm.h
Examining data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunSCAAS.h
Examining data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunShiftedNonbondedTerm.h
Examining data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunSimpleListHandler.h
Examining data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunSimulationData.h
Examining data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunSimulator.h
Examining data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunSphericalBox.h
Examining data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunSystem.h
Examining data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunSystemCollection.h
Examining data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunTemplateProcessor.h
Examining data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunTimer.h
Examining data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunTrajectory.h
Examining data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunFileSystemSimulationStorage.h
Examining data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunModelObject.h
Examining data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunDefinitions.h
Examining data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunSmoothedGBTerm.h
Examining data/adun.app-0.81/Kernel/Base/AdBaseFunctions.c
Examining data/adun.app-0.81/Kernel/Base/AdBaseFunctions.h
Examining data/adun.app-0.81/Kernel/Base/AdCoulombAndLennardJonesA.c
Examining data/adun.app-0.81/Kernel/Base/AdCoulombAndLennardJonesB.c
Examining data/adun.app-0.81/Kernel/Base/AdEnzymixAngle.c
Examining data/adun.app-0.81/Kernel/Base/AdEnzymixBond.c
Examining data/adun.app-0.81/Kernel/Base/AdForceFieldFunctions.h
Examining data/adun.app-0.81/Kernel/Base/AdGeneralizedBornFunctions.h
Examining data/adun.app-0.81/Kernel/Base/AdHarmonicAngle.c
Examining data/adun.app-0.81/Kernel/Base/AdMatrix.h
Examining data/adun.app-0.81/Kernel/Base/AdQuadratureFunctions.h
Examining data/adun.app-0.81/Kernel/Base/AdQuaternion.h
Examining data/adun.app-0.81/Kernel/Base/AdSorter.c
Examining data/adun.app-0.81/Kernel/Base/AdSorter.h
Examining data/adun.app-0.81/Kernel/Base/AdVector.c
Examining data/adun.app-0.81/Kernel/Base/AdVector.h
Examining data/adun.app-0.81/Kernel/Base/AdLinkedList.c
Examining data/adun.app-0.81/Kernel/Base/AdLinkedList.h
Examining data/adun.app-0.81/Kernel/Base/AdFourierTorsion.c
Examining data/adun.app-0.81/Kernel/Base/AdMatrix.c
Examining data/adun.app-0.81/Kernel/Base/AdGeneralizedBornFunctions.c
Examining data/adun.app-0.81/Kernel/Base/AdQuaternion.c
Examining data/adun.app-0.81/Kernel/Base/AdQuadratureFunctions.c
Examining data/adun.app-0.81/Kernel/Base/AdVolumeFunctions.c
Examining data/adun.app-0.81/Kernel/Base/AdVolumeFunctions.h
Examining data/adun.app-0.81/Kernel/Base/AdHarmonicBond.c
Examining data/adun.app-0.81/Kernel/Base/AdHarmonicImproperTorsion.c
Examining data/adun.app-0.81/MolTalk/GNUstepAdditions.h
Examining data/adun.app-0.81/MolTalk/MTAlPos.h
Examining data/adun.app-0.81/MolTalk/MTAtom.h
Examining data/adun.app-0.81/MolTalk/MTAtomFactory.h
Examining data/adun.app-0.81/MolTalk/MTChain.h
Examining data/adun.app-0.81/MolTalk/MTChainFactory.h
Examining data/adun.app-0.81/MolTalk/MTCompressedFileStream.h
Examining data/adun.app-0.81/MolTalk/MTCoordinates.h
Examining data/adun.app-0.81/MolTalk/MTFileStream.h
Examining data/adun.app-0.81/MolTalk/MTMatrix.h
Examining data/adun.app-0.81/MolTalk/MTMatrix44.h
Examining data/adun.app-0.81/MolTalk/MTMatrix53.h
Examining data/adun.app-0.81/MolTalk/MTPDBParser.h
Examining data/adun.app-0.81/MolTalk/MTPairwiseSequenceAlignment.h
Examining data/adun.app-0.81/MolTalk/MTPairwiseStrxAlignment.h
Examining data/adun.app-0.81/MolTalk/MTQuaternion.h
Examining data/adun.app-0.81/MolTalk/MTResidue.h
Examining data/adun.app-0.81/MolTalk/MTResidueFactory.h
Examining data/adun.app-0.81/MolTalk/MTSelection.h
Examining data/adun.app-0.81/MolTalk/MTStream.h
Examining data/adun.app-0.81/MolTalk/MTString.h
Examining data/adun.app-0.81/MolTalk/MTStructure.h
Examining data/adun.app-0.81/MolTalk/MTStructureFactory.h
Examining data/adun.app-0.81/MolTalk/MTSubstitutionMatrix.h
Examining data/adun.app-0.81/MolTalk/MTVector.h
Examining data/adun.app-0.81/MolTalk/MolTalk.c
Examining data/adun.app-0.81/MolTalk/MolTalk.h
Examining data/adun.app-0.81/MolTalk/NSScanner+additions.h
Examining data/adun.app-0.81/MolTalk/blosum45.h
Examining data/adun.app-0.81/MolTalk/blosum62.h
Examining data/adun.app-0.81/MolTalk/blosum80.h
Examining data/adun.app-0.81/MolTalk/privateMTChain.h
Examining data/adun.app-0.81/MolTalk/privateMTMatrix.h
Examining data/adun.app-0.81/MolTalk/privateMTResidue.h
Examining data/adun.app-0.81/MolTalk/privateMTSelection.h
Examining data/adun.app-0.81/MolTalk/privateMTStructure.h
Examining data/adun.app-0.81/Plugins/Analyse/CAlphaDistance/CAlphaDistance.h
Examining data/adun.app-0.81/Plugins/Analyse/PDBInfo/PDBInfo.h
Examining data/adun.app-0.81/Plugins/Controllers/AdunShell/AdunShell.h
Examining data/adun.app-0.81/Plugins/Controllers/AdunShell/STShell.h
Examining data/adun.app-0.81/Plugins/Results/EnergyConverter/EnergyConverter.h
Examining data/adun.app-0.81/Plugins/Results/ConformationConverter/ConformationConverter.h
Examining data/adun.app-0.81/Plugins/Results/SystemAnalysis/SystemAnalysis.h
Examining data/adun.app-0.81/Tools/ResultsConverter/ResultsConverter.h
Examining data/adun.app-0.81/UL/AdunServer/AdServer.h
Examining data/adun.app-0.81/UL/AdunServer/AdServerCommandInterface.h
Examining data/adun.app-0.81/UL/ULAnalyser.h
Examining data/adun.app-0.81/UL/ULAnalyserDataSetView.h
Examining data/adun.app-0.81/UL/ULConverter.h
Examining data/adun.app-0.81/UL/ULDatabaseBrowser.h
Examining data/adun.app-0.81/UL/ULDatabaseManager.h
Examining data/adun.app-0.81/UL/ULExportController.h
Examining data/adun.app-0.81/UL/ULExportPanel.h
Examining data/adun.app-0.81/UL/ULInterfaceFunctions.h
Examining data/adun.app-0.81/UL/ULOutlineViewAdditions.h
Examining data/adun.app-0.81/UL/ULOutlineViewDelegate.h
Examining data/adun.app-0.81/UL/ULPreferences.h
Examining data/adun.app-0.81/UL/ULProgressPanel.h
Examining data/adun.app-0.81/UL/ULPropertiesPanel.h
Examining data/adun.app-0.81/UL/ULSimulationCreator.h
Examining data/adun.app-0.81/UL/ULStatusTable.h
Examining data/adun.app-0.81/UL/ULViewControllerSimulationCommands.h
Examining data/adun.app-0.81/UL/ViewController.h
Examining data/adun.app-0.81/UL/Extensions/ULApplicationScripting/STTranscript.h
Examining data/adun.app-0.81/UL/Extensions/ULApplicationScripting/ULScriptManager.h
Examining data/adun.app-0.81/UL/Extensions/ULSQLDatabaseBackend/ULSQLDatabaseBackend.h
Examining data/adun.app-0.81/UL/ULFramework/PDBConfigurationBuilder.h
Examining data/adun.app-0.81/UL/ULFramework/ULAnalysisManager.h
Examining data/adun.app-0.81/UL/ULFramework/ULAnalysisPlugin.h
Examining data/adun.app-0.81/UL/ULFramework/ULConfigurationBuilder.h
Examining data/adun.app-0.81/UL/ULFramework/ULConfigurationPlugin.h
Examining data/adun.app-0.81/UL/ULFramework/ULDatabaseInterface.h
Examining data/adun.app-0.81/UL/ULFramework/ULDatabaseSimulationIndex.h
Examining data/adun.app-0.81/UL/ULFramework/ULFileSystemDatabaseBackend.h
Examining data/adun.app-0.81/UL/ULFramework/ULFramework.h
Examining data/adun.app-0.81/UL/ULFramework/ULFrameworkDefinitions.h
Examining data/adun.app-0.81/UL/ULFramework/ULFrameworkFunctions.h
Examining data/adun.app-0.81/UL/ULFramework/ULIOManager.h
Examining data/adun.app-0.81/UL/ULFramework/ULInteractionsBuilder.h
Examining data/adun.app-0.81/UL/ULFramework/ULMenuExtensions.h
Examining data/adun.app-0.81/UL/ULFramework/ULMerger.h
Examining data/adun.app-0.81/UL/ULFramework/ULMergerDelegate.h
Examining data/adun.app-0.81/UL/ULFramework/ULProcess.h
Examining data/adun.app-0.81/UL/ULFramework/ULProcessManager.h
Examining data/adun.app-0.81/UL/ULFramework/ULProject.h
Examining data/adun.app-0.81/UL/ULFramework/ULServerInterface.h
Examining data/adun.app-0.81/UL/ULFramework/ULServerManager.h
Examining data/adun.app-0.81/UL/ULFramework/ULSimpleMergerDelegate.h
Examining data/adun.app-0.81/UL/ULFramework/ULSystem.h
Examining data/adun.app-0.81/UL/ULFramework/ULSystemBuilder.h
Examining data/adun.app-0.81/UL/ULFramework/ULSystemController.h
Examining data/adun.app-0.81/UL/ULFramework/ULTemplate.h
Examining data/adun.app-0.81/UL/ULFramework/ULTopologyFrameBuilder.h
Examining data/adun.app-0.81/UL/ULFramework/ULURLDownload.h
Examining data/adun.app-0.81/UL/ULFramework/ULDatabaseIndex.h
Examining data/adun.app-0.81/UL/XMLLib/ULAtomListNode.h
Examining data/adun.app-0.81/UL/XMLLib/ULClassNode.h
Examining data/adun.app-0.81/UL/XMLLib/ULConnectivityNode.h
Examining data/adun.app-0.81/UL/XMLLib/ULInteractionNode.h
Examining data/adun.app-0.81/UL/XMLLib/ULMolecularLibraryNode.h
Examining data/adun.app-0.81/UL/XMLLib/ULMolecularLibraryTree.h
Examining data/adun.app-0.81/UL/XMLLib/ULMoleculeClassNode.h
Examining data/adun.app-0.81/UL/XMLLib/ULMoleculeNode.h
Examining data/adun.app-0.81/UL/XMLLib/ULParameterNode.h
Examining data/adun.app-0.81/UL/XMLLib/ULParameterTree.h
Examining data/adun.app-0.81/UL/XMLLib/ULTopologyNode.h
Examining data/adun.app-0.81/UL/XMLLib/XMLDocumentRoot.h
Examining data/adun.app-0.81/UL/XMLLib/XMLLib.h
Examining data/adun.app-0.81/UL/XMLLib/XMLNode.h
Examining data/adun.app-0.81/UL/ULPasteboard.h
Examining data/adun.app-0.81/UL/ULSystemViewController.h
Examining data/adun.app-0.81/UL/ULTemplateViewController.h

FINAL RESULTS:

data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdForceFieldTerm.h:51:29:  [4] (shell) system:
  This causes a new program to execute and is difficult to use safely
  (CWE-78). try using a library call that implements the same functionality
  if available.
- (id) initWithSystem: (id) system;
data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdForceFieldTerm.h:98:26:  [4] (shell) system:
  This causes a new program to execute and is difficult to use safely
  (CWE-78). try using a library call that implements the same functionality
  if available.
- (void) setSystem: (id) system;
data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdForceFieldTerm.h:102:8:  [4] (shell) system:
  This causes a new program to execute and is difficult to use safely
  (CWE-78). try using a library call that implements the same functionality
  if available.
- (id) system;
data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdFrameworkFunctions.h:52:40:  [4] (shell) system:
  This causes a new program to execute and is difficult to use safely
  (CWE-78). try using a library call that implements the same functionality
  if available.
NSError* AdCreateEnergyError(AdSystem* system, NSString* interactionType, NSArray* interactingAtoms);
data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunCellListHandler.h:91:5:  [4] (shell) system:
  This causes a new program to execute and is difficult to use safely
  (CWE-78). try using a library call that implements the same functionality
  if available.
	id system;
data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunContainerDataSource.h:185:35:  [4] (shell) system:
  This causes a new program to execute and is difficult to use safely
  (CWE-78). try using a library call that implements the same functionality
  if available.
- (int) insertSystem: (AdSystem*) system;
data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunContainerDataSource.h:194:35:  [4] (shell) system:
  This causes a new program to execute and is difficult to use safely
  (CWE-78). try using a library call that implements the same functionality
  if available.
- (int) removeSystem: (AdSystem*) system;
data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunForceField.h:57:29:  [4] (shell) system:
  This causes a new program to execute and is difficult to use safely
  (CWE-78). try using a library call that implements the same functionality
  if available.
- (id) initWithSystem: (id) system;
data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunForceField.h:121:8:  [4] (shell) system:
  This causes a new program to execute and is difficult to use safely
  (CWE-78). try using a library call that implements the same functionality
  if available.
- (id) system;
data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunForceField.h:125:26:  [4] (shell) system:
  This causes a new program to execute and is difficult to use safely
  (CWE-78). try using a library call that implements the same functionality
  if available.
- (void) setSystem: (id) system;
data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunGRFNonbondedTerm.h:74:5:  [4] (shell) system:
  This causes a new program to execute and is difficult to use safely
  (CWE-78). try using a library call that implements the same functionality
  if available.
	id system;
data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunGRFNonbondedTerm.h:94:29:  [4] (shell) system:
  This causes a new program to execute and is difficult to use safely
  (CWE-78). try using a library call that implements the same functionality
  if available.
- (id) initWithSystem: (id) system;
data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunHarmonicConstraintTerm.h:70:29:  [4] (shell) system:
  This causes a new program to execute and is difficult to use safely
  (CWE-78). try using a library call that implements the same functionality
  if available.
- (id) initWithSystem: (id) system 
data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunHarmonicConstraintTerm.h:78:29:  [4] (shell) system:
  This causes a new program to execute and is difficult to use safely
  (CWE-78). try using a library call that implements the same functionality
  if available.
- (id) initWithSystem: (id) system
data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunHarmonicConstraintTerm.h:86:29:  [4] (shell) system:
  This causes a new program to execute and is difficult to use safely
  (CWE-78). try using a library call that implements the same functionality
  if available.
- (id) initWithSystem: (id) system
data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunHarmonicConstraintTerm.h:95:29:  [4] (shell) system:
  This causes a new program to execute and is difficult to use safely
  (CWE-78). try using a library call that implements the same functionality
  if available.
- (id) initWithSystem: (id) system
data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunHarmonicConstraintTerm.h:104:29:  [4] (shell) system:
  This causes a new program to execute and is difficult to use safely
  (CWE-78). try using a library call that implements the same functionality
  if available.
- (id) initWithSystem: (id) system
data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunHarmonicConstraintTerm.h:111:29:  [4] (shell) system:
  This causes a new program to execute and is difficult to use safely
  (CWE-78). try using a library call that implements the same functionality
  if available.
- (id) initWithSystem: (id) system;  
data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunListHandler.h:120:8:  [4] (shell) system:
  This causes a new program to execute and is difficult to use safely
  (CWE-78). try using a library call that implements the same functionality
  if available.
- (id) system;
data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunMinimiser.h:222:73:  [4] (shell) system:
  This causes a new program to execute and is difficult to use safely
  (CWE-78). try using a library call that implements the same functionality
  if available.
- (void) setConstraints: (AdDataMatrix*) aMatrix forSystem: (AdSystem*) system;
data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunMinimiser.h:227:53:  [4] (shell) system:
  This causes a new program to execute and is difficult to use safely
  (CWE-78). try using a library call that implements the same functionality
  if available.
- (AdDataMatrix*) constraintsForSystem: (AdSystem*) system;
data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunMinimiser.h:231:50:  [4] (shell) system:
  This causes a new program to execute and is difficult to use safely
  (CWE-78). try using a library call that implements the same functionality
  if available.
- (void) removeConstraintsForSystem: (AdSystem*) system;
data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunMolecularMechanicsForceField.h:106:5:  [4] (shell) system:
  This causes a new program to execute and is difficult to use safely
  (CWE-78). try using a library call that implements the same functionality
  if available.
	id system;
data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunMolecularMechanicsForceField.h:119:41:  [4] (shell) system:
  This causes a new program to execute and is difficult to use safely
  (CWE-78). try using a library call that implements the same functionality
  if available.
+ (id) forceFieldForSystem: (AdSystem*) system;
data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunMolecularMechanicsForceField.h:127:29:  [4] (shell) system:
  This causes a new program to execute and is difficult to use safely
  (CWE-78). try using a library call that implements the same functionality
  if available.
- (id) initWithSystem: (id) system;
data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunMolecularMechanicsForceField.h:131:29:  [4] (shell) system:
  This causes a new program to execute and is difficult to use safely
  (CWE-78). try using a library call that implements the same functionality
  if available.
- (id) initWithSystem: (id) system nonbondedTerm: (AdNonbondedTerm*) anObject;
data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunMolecularMechanicsForceField.h:147:29:  [4] (shell) system:
  This causes a new program to execute and is difficult to use safely
  (CWE-78). try using a library call that implements the same functionality
  if available.
- (id) initWithSystem: (id) system 
data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunMoleculeCavity.h:95:29:  [4] (shell) system:
  This causes a new program to execute and is difficult to use safely
  (CWE-78). try using a library call that implements the same functionality
  if available.
- (id) initWithSystem: (id) system factor: (double) factorValue;
data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunNonbondedTerm.h:72:29:  [4] (shell) system:
  This causes a new program to execute and is difficult to use safely
  (CWE-78). try using a library call that implements the same functionality
  if available.
- (id) initWithSystem: (id) system
data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunPureNonbondedTerm.h:74:5:  [4] (shell) system:
  This causes a new program to execute and is difficult to use safely
  (CWE-78). try using a library call that implements the same functionality
  if available.
	id system;
data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunPureNonbondedTerm.h:91:29:  [4] (shell) system:
  This causes a new program to execute and is difficult to use safely
  (CWE-78). try using a library call that implements the same functionality
  if available.
- (id) initWithSystem: (id) system;
data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunPureNonbondedTerm.h:118:29:  [4] (shell) system:
  This causes a new program to execute and is difficult to use safely
  (CWE-78). try using a library call that implements the same functionality
  if available.
- (id) initWithSystem: (id) system
data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunSCAAS.h:103:5:  [4] (shell) system:
  This causes a new program to execute and is difficult to use safely
  (CWE-78). try using a library call that implements the same functionality
  if available.
	id system;
data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunShiftedNonbondedTerm.h:70:5:  [4] (shell) system:
  This causes a new program to execute and is difficult to use safely
  (CWE-78). try using a library call that implements the same functionality
  if available.
	id system;
data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunShiftedNonbondedTerm.h:88:29:  [4] (shell) system:
  This causes a new program to execute and is difficult to use safely
  (CWE-78). try using a library call that implements the same functionality
  if available.
- (id) initWithSystem: (id) system;
data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunShiftedNonbondedTerm.h:115:29:  [4] (shell) system:
  This causes a new program to execute and is difficult to use safely
  (CWE-78). try using a library call that implements the same functionality
  if available.
- (id) initWithSystem: (id) system
data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunSimpleListHandler.h:60:5:  [4] (shell) system:
  This causes a new program to execute and is difficult to use safely
  (CWE-78). try using a library call that implements the same functionality
  if available.
	id system;
data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunSimulationData.h:178:31:  [4] (shell) system:
  This causes a new program to execute and is difficult to use safely
  (CWE-78). try using a library call that implements the same functionality
  if available.
- (id) mementoForSystem: (id) system inTrajectoryCheckpoint: (unsigned int) number;
data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunSimulationData.h:184:34:  [4] (shell) system:
  This causes a new program to execute and is difficult to use safely
  (CWE-78). try using a library call that implements the same functionality
  if available.
- (id) dataSourceForSystem: (id) system inTopologyCheckpoint: (unsigned int) number;
data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunSimulationData.h:221:46:  [4] (shell) system:
  This causes a new program to execute and is difficult to use safely
  (CWE-78). try using a library call that implements the same functionality
  if available.
- (id) lastRecordedDataSourceForSystem: (id) system inRange: (NSRange) aRange;
data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunSimulationData.h:233:61:  [4] (shell) system:
  This causes a new program to execute and is difficult to use safely
  (CWE-78). try using a library call that implements the same functionality
  if available.
- (id) mementoForFrame: (unsigned int) frame ofSystem: (id) system;
data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunSimulationData.h:239:48:  [4] (shell) system:
  This causes a new program to execute and is difficult to use safely
  (CWE-78). try using a library call that implements the same functionality
  if available.
- (unsigned int) numberOfFramesForSystem: (id) system;
data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunSmoothedGBTerm.h:70:5:  [4] (shell) system:
  This causes a new program to execute and is difficult to use safely
  (CWE-78). try using a library call that implements the same functionality
  if available.
	id system;			//!< The system were working on
data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunSmoothedGBTerm.h:129:29:  [4] (shell) system:
  This causes a new program to execute and is difficult to use safely
  (CWE-78). try using a library call that implements the same functionality
  if available.
- (id) initWithSystem: (id) system 
data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunTrajectory.h:129:31:  [4] (shell) system:
  This causes a new program to execute and is difficult to use safely
  (CWE-78). try using a library call that implements the same functionality
  if available.
- (id) mementoForSystem: (id) system inTrajectoryCheckpoint: (unsigned int) number;
data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunTrajectory.h:135:34:  [4] (shell) system:
  This causes a new program to execute and is difficult to use safely
  (CWE-78). try using a library call that implements the same functionality
  if available.
- (id) dataSourceForSystem: (id) system inTopologyCheckpoint: (unsigned int) number;
data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunTrajectory.h:139:46:  [4] (shell) system:
  This causes a new program to execute and is difficult to use safely
  (CWE-78). try using a library call that implements the same functionality
  if available.
- (AdDataMatrix*) coordinatesForSystem: (id) system inTrajectoryCheckpoint: (unsigned int) number;
data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunTrajectory.h:144:37:  [4] (shell) system:
  This causes a new program to execute and is difficult to use safely
  (CWE-78). try using a library call that implements the same functionality
  if available.
- (void) coordinatesForSystem: (id) system inTrajectoryCheckpoint: (unsigned int) number usingBuffer: (AdMatrix*) buffer;
data/adun.app-0.81/Kernel/AdunKernel/Headers/AdunKernel/AdunTrajectory.h:192:46:  [4] (shell) system:
  This causes a new program to execute and is difficult to use safely
  (CWE-78). try using a library call that implements the same functionality
  if available.
- (id) lastRecordedDataSourceForSystem: (id) system inRange: (NSRange) aRange;
data/adun.app-0.81/Plugins/Results/SystemAnalysis/SystemAnalysis.h:40:12:  [4] (shell) system:
  This causes a new program to execute and is difficult to use safely
  (CWE-78). try using a library call that implements the same functionality
  if available.
	AdSystem* system;
data/adun.app-0.81/UL/ULFramework/ULFrameworkFunctions.h:96:75:  [4] (shell) system:
  This causes a new program to execute and is difficult to use safely
  (CWE-78). try using a library call that implements the same functionality
  if available.
AdDataSource* ULCreateDataSourceFromSimulation(AdSimulationData* data, id system, int checkpoint);
data/adun.app-0.81/UL/ULFramework/ULFrameworkFunctions.h:109:19:  [4] (shell) system:
  This causes a new program to execute and is difficult to use safely
  (CWE-78). try using a library call that implements the same functionality
  if available.
			ofSystem: (id) system
data/adun.app-0.81/UL/ULFramework/ULSystemBuilder.h:60:16:  [4] (shell) system:
  This causes a new program to execute and is difficult to use safely
  (CWE-78). try using a library call that implements the same functionality
  if available.
	AdDataSource* system;		//!< The last fully created system
data/adun.app-0.81/UL/ULFramework/ULSystemBuilder.h:136:19:  [4] (shell) system:
  This causes a new program to execute and is difficult to use safely
  (CWE-78). try using a library call that implements the same functionality
  if available.
- (AdDataSource*) system;
data/adun.app-0.81/UL/ULFramework/ULSystemController.h:47:5:  [4] (shell) system:
  This causes a new program to execute and is difficult to use safely
  (CWE-78). try using a library call that implements the same functionality
  if available.
	id system;		//!< The current system	
data/adun.app-0.81/UL/ULFramework/ULSystemController.h:102:19:  [4] (shell) system:
  This causes a new program to execute and is difficult to use safely
  (CWE-78). try using a library call that implements the same functionality
  if available.
- (AdDataSource*) system;
data/adun.app-0.81/ExternalPackages/StepTalk/Frameworks/StepTalk/STRemoteConversation.h:48:9:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
- (void)open;
data/adun.app-0.81/UL/Extensions/ULApplicationScripting/ULScriptManager.h:69:10:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
- (void) open: (id) sender;
data/adun.app-0.81/UL/ULAnalyser.h:103:10:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
- (void) open: (id) sender;
data/adun.app-0.81/UL/ULConverter.h:53:10:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
- (void) open: (id) sender;
data/adun.app-0.81/UL/ULSystemViewController.h:95:10:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
- (void) open: (id)sender;
data/adun.app-0.81/UL/ULTemplateViewController.h:70:10:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
- (void) open: (id) sender;

ANALYSIS SUMMARY:

Hits = 62
Lines analyzed = 31167 in approximately 1.01 seconds (30835 lines/second)
Physical Source Lines of Code (SLOC) = 11100
Hits@level = [0] 103 [1]   0 [2]   6 [3]   0 [4]  56 [5]   0
Hits@level+ = [0+] 165 [1+]  62 [2+]  62 [3+]  56 [4+]  56 [5+]   0
Hits/KSLOC@level+ = [0+] 14.8649 [1+] 5.58559 [2+] 5.58559 [3+] 5.04505 [4+] 5.04505 [5+]   0
Dot directories skipped = 1 (--followdotdir overrides)
Minimum risk level = 1
Not every hit is necessarily a security vulnerability.
There may be other security vulnerabilities; review your code!
See 'Secure Programming HOWTO'
(https://dwheeler.com/secure-programs) for more information.