Flawfinder version 2.0.10, (C) 2001-2019 David A. Wheeler.
Number of rules (primarily dangerous function names) in C/C++ ruleset: 223
Examining data/bagel-1.2.2/btas/array_adaptor.h
Examining data/bagel-1.2.2/btas/btas.h
Examining data/bagel-1.2.2/btas/corange.h
Examining data/bagel-1.2.2/btas/defaults.h
Examining data/bagel-1.2.2/btas/error.h
Examining data/bagel-1.2.2/btas/generic/axpy_impl.h
Examining data/bagel-1.2.2/btas/generic/contract.h
Examining data/bagel-1.2.2/btas/generic/dot_impl.h
Examining data/bagel-1.2.2/btas/generic/gemm_impl.h
Examining data/bagel-1.2.2/btas/generic/gemv_impl.h
Examining data/bagel-1.2.2/btas/generic/ger_impl.h
Examining data/bagel-1.2.2/btas/generic/numeric_type.h
Examining data/bagel-1.2.2/btas/generic/permute.h
Examining data/bagel-1.2.2/btas/generic/scal_impl.h
Examining data/bagel-1.2.2/btas/generic/tensor_iterator_wrapper.h
Examining data/bagel-1.2.2/btas/index_traits.h
Examining data/bagel-1.2.2/btas/optimize/contract.h
Examining data/bagel-1.2.2/btas/ordinal.h
Examining data/bagel-1.2.2/btas/range.h
Examining data/bagel-1.2.2/btas/range_iterator.h
Examining data/bagel-1.2.2/btas/range_traits.h
Examining data/bagel-1.2.2/btas/serialization.h
Examining data/bagel-1.2.2/btas/special/permute.h
Examining data/bagel-1.2.2/btas/special/reindex.h
Examining data/bagel-1.2.2/btas/storage_traits.h
Examining data/bagel-1.2.2/btas/tarray.h
Examining data/bagel-1.2.2/btas/tensor.h
Examining data/bagel-1.2.2/btas/tensor_func.h
Examining data/bagel-1.2.2/btas/tensor_traits.h
Examining data/bagel-1.2.2/btas/tensorview.h
Examining data/bagel-1.2.2/btas/tensorview_iterator.h
Examining data/bagel-1.2.2/btas/type_traits.h
Examining data/bagel-1.2.2/btas/types.h
Examining data/bagel-1.2.2/btas/util/dot.h
Examining data/bagel-1.2.2/btas/util/functional.h
Examining data/bagel-1.2.2/btas/util/optional_ptr.h
Examining data/bagel-1.2.2/btas/util/resize.h
Examining data/bagel-1.2.2/btas/util/sequence_adaptor.h
Examining data/bagel-1.2.2/btas/varray/allocators.h
Examining data/bagel-1.2.2/btas/varray/varray.h
Examining data/bagel-1.2.2/src/asd/asd.h
Examining data/bagel-1.2.2/src/asd/asd_base.cc
Examining data/bagel-1.2.2/src/asd/asd_base.h
Examining data/bagel-1.2.2/src/asd/asd_cas.cc
Examining data/bagel-1.2.2/src/asd/asd_cas.h
Examining data/bagel-1.2.2/src/asd/asd_compute.hpp
Examining data/bagel-1.2.2/src/asd/asd_compute_diagonal.hpp
Examining data/bagel-1.2.2/src/asd/asd_compute_rdm.hpp
Examining data/bagel-1.2.2/src/asd/asd_diagonalize.cc
Examining data/bagel-1.2.2/src/asd/asd_init.hpp
Examining data/bagel-1.2.2/src/asd/asd_modelize.cc
Examining data/bagel-1.2.2/src/asd/asd_ras.cc
Examining data/bagel-1.2.2/src/asd/asd_ras.h
Examining data/bagel-1.2.2/src/asd/asd_rdm.cc
Examining data/bagel-1.2.2/src/asd/asd_spin.cc
Examining data/bagel-1.2.2/src/asd/asd_spin.h
Examining data/bagel-1.2.2/src/asd/asd_spin_coupling.hpp
Examining data/bagel-1.2.2/src/asd/construct_asd.cc
Examining data/bagel-1.2.2/src/asd/construct_asd.h
Examining data/bagel-1.2.2/src/asd/coupling.cc
Examining data/bagel-1.2.2/src/asd/coupling.h
Examining data/bagel-1.2.2/src/asd/dimer/dimer.cc
Examining data/bagel-1.2.2/src/asd/dimer/dimer.h
Examining data/bagel-1.2.2/src/asd/dimer/dimer_cispace.h
Examining data/bagel-1.2.2/src/asd/dimer/dimer_jop.cc
Examining data/bagel-1.2.2/src/asd/dimer/dimer_jop.h
Examining data/bagel-1.2.2/src/asd/dimer/dimer_linked.cc
Examining data/bagel-1.2.2/src/asd/dimer/dimer_scf.cc
Examining data/bagel-1.2.2/src/asd/dimersubspace.h
Examining data/bagel-1.2.2/src/asd/dmrg/asd_dmrg.cc
Examining data/bagel-1.2.2/src/asd/dmrg/asd_dmrg.h
Examining data/bagel-1.2.2/src/asd/dmrg/asd_dmrg_compute.cc
Examining data/bagel-1.2.2/src/asd/dmrg/block_key.h
Examining data/bagel-1.2.2/src/asd/dmrg/block_operators.h
Examining data/bagel-1.2.2/src/asd/dmrg/block_ops_1.cc
Examining data/bagel-1.2.2/src/asd/dmrg/block_ops_2.cc
Examining data/bagel-1.2.2/src/asd/dmrg/dmrg_block.cc
Examining data/bagel-1.2.2/src/asd/dmrg/dmrg_block.h
Examining data/bagel-1.2.2/src/asd/dmrg/form_sigma.cc
Examining data/bagel-1.2.2/src/asd/dmrg/form_sigma.h
Examining data/bagel-1.2.2/src/asd/dmrg/form_sigma_ci.cc
Examining data/bagel-1.2.2/src/asd/dmrg/gamma_forest_asd.h
Examining data/bagel-1.2.2/src/asd/dmrg/gamma_forest_prod_asd.cc
Examining data/bagel-1.2.2/src/asd/dmrg/gamma_forest_prod_asd.h
Examining data/bagel-1.2.2/src/asd/dmrg/kronecker.cc
Examining data/bagel-1.2.2/src/asd/dmrg/kronecker.h
Examining data/bagel-1.2.2/src/asd/dmrg/phi_ijk_lists.cc
Examining data/bagel-1.2.2/src/asd/dmrg/phi_ijk_lists.h
Examining data/bagel-1.2.2/src/asd/dmrg/phi_k_lists.cc
Examining data/bagel-1.2.2/src/asd/dmrg/phi_k_lists.h
Examining data/bagel-1.2.2/src/asd/dmrg/product_citask.h
Examining data/bagel-1.2.2/src/asd/dmrg/product_civec.cc
Examining data/bagel-1.2.2/src/asd/dmrg/product_civec.h
Examining data/bagel-1.2.2/src/asd/dmrg/product_denom.cc
Examining data/bagel-1.2.2/src/asd/dmrg/product_guess.cc
Examining data/bagel-1.2.2/src/asd/dmrg/product_modelci.cc
Examining data/bagel-1.2.2/src/asd/dmrg/product_modelci.h
Examining data/bagel-1.2.2/src/asd/dmrg/product_rasci.cc
Examining data/bagel-1.2.2/src/asd/dmrg/product_rasci.h
Examining data/bagel-1.2.2/src/asd/dmrg/rasd.cc
Examining data/bagel-1.2.2/src/asd/dmrg/rasd.h
Examining data/bagel-1.2.2/src/asd/gamma_forest.cc
Examining data/bagel-1.2.2/src/asd/gamma_forest.h
Examining data/bagel-1.2.2/src/asd/gamma_sq.h
Examining data/bagel-1.2.2/src/asd/gamma_task.cc
Examining data/bagel-1.2.2/src/asd/gamma_task.h
Examining data/bagel-1.2.2/src/asd/gamma_tensor.cc
Examining data/bagel-1.2.2/src/asd/gamma_tensor.h
Examining data/bagel-1.2.2/src/asd/gamma_tree.cc
Examining data/bagel-1.2.2/src/asd/gamma_tree.h
Examining data/bagel-1.2.2/src/asd/multisite/multisite.cc
Examining data/bagel-1.2.2/src/asd/multisite/multisite.h
Examining data/bagel-1.2.2/src/asd/orbital/asd_bfgs.cc
Examining data/bagel-1.2.2/src/asd/orbital/asd_bfgs.h
Examining data/bagel-1.2.2/src/asd/orbital/asd_bfgs_denom.cc
Examining data/bagel-1.2.2/src/asd/orbital/asd_bfgs_grad.cc
Examining data/bagel-1.2.2/src/asd/orbital/asd_orbopt.cc
Examining data/bagel-1.2.2/src/asd/orbital/asd_orbopt.h
Examining data/bagel-1.2.2/src/asd/orbital/asd_rotfile.h
Examining data/bagel-1.2.2/src/asd/orbital/construct_asd_orbopt.cc
Examining data/bagel-1.2.2/src/asd/orbital/construct_asd_orbopt.h
Examining data/bagel-1.2.2/src/asd/state_tensor.h
Examining data/bagel-1.2.2/src/bagel.h
Examining data/bagel-1.2.2/src/ci/ciutil/bitutil.h
Examining data/bagel-1.2.2/src/ci/ciutil/ciblock.h
Examining data/bagel-1.2.2/src/ci/ciutil/cistring.cc
Examining data/bagel-1.2.2/src/ci/ciutil/cistring.h
Examining data/bagel-1.2.2/src/ci/ciutil/cistringmap.h
Examining data/bagel-1.2.2/src/ci/ciutil/cistringset.cc
Examining data/bagel-1.2.2/src/ci/ciutil/cistringset.h
Examining data/bagel-1.2.2/src/ci/ciutil/cistringspace.h
Examining data/bagel-1.2.2/src/ci/ciutil/citraits.h
Examining data/bagel-1.2.2/src/ci/ciutil/determinants_base.cc
Examining data/bagel-1.2.2/src/ci/ciutil/determinants_base.h
Examining data/bagel-1.2.2/src/ci/fci/citask.h
Examining data/bagel-1.2.2/src/ci/fci/civec.cc
Examining data/bagel-1.2.2/src/ci/fci/civec.h
Examining data/bagel-1.2.2/src/ci/fci/determinants.cc
Examining data/bagel-1.2.2/src/ci/fci/determinants.h
Examining data/bagel-1.2.2/src/ci/fci/dist_form_sigma.cc
Examining data/bagel-1.2.2/src/ci/fci/dist_form_sigma.h
Examining data/bagel-1.2.2/src/ci/fci/distcivec.cc
Examining data/bagel-1.2.2/src/ci/fci/distcivec.h
Examining data/bagel-1.2.2/src/ci/fci/distfci.cc
Examining data/bagel-1.2.2/src/ci/fci/distfci.h
Examining data/bagel-1.2.2/src/ci/fci/distfci_ab.h
Examining data/bagel-1.2.2/src/ci/fci/distfci_bb.h
Examining data/bagel-1.2.2/src/ci/fci/distfci_rdm.cc
Examining data/bagel-1.2.2/src/ci/fci/dvec.cc
Examining data/bagel-1.2.2/src/ci/fci/dvec.h
Examining data/bagel-1.2.2/src/ci/fci/dvector_base.h
Examining data/bagel-1.2.2/src/ci/fci/fci.cc
Examining data/bagel-1.2.2/src/ci/fci/fci.h
Examining data/bagel-1.2.2/src/ci/fci/fci_base.cc
Examining data/bagel-1.2.2/src/ci/fci/fci_base.h
Examining data/bagel-1.2.2/src/ci/fci/fci_io.cc
Examining data/bagel-1.2.2/src/ci/fci/fci_rdm.cc
Examining data/bagel-1.2.2/src/ci/fci/fci_rdm_alpha.cc
Examining data/bagel-1.2.2/src/ci/fci/fci_rdmderiv.cc
Examining data/bagel-1.2.2/src/ci/fci/harrison.h
Examining data/bagel-1.2.2/src/ci/fci/harrison_compute.cc
Examining data/bagel-1.2.2/src/ci/fci/harrison_denom.cc
Examining data/bagel-1.2.2/src/ci/fci/hzdenomtask.h
Examining data/bagel-1.2.2/src/ci/fci/hztasks.h
Examining data/bagel-1.2.2/src/ci/fci/knowles.h
Examining data/bagel-1.2.2/src/ci/fci/knowles_compute.cc
Examining data/bagel-1.2.2/src/ci/fci/knowles_denom.cc
Examining data/bagel-1.2.2/src/ci/fci/modelci.cc
Examining data/bagel-1.2.2/src/ci/fci/modelci.h
Examining data/bagel-1.2.2/src/ci/fci/mofile.cc
Examining data/bagel-1.2.2/src/ci/fci/mofile.h
Examining data/bagel-1.2.2/src/ci/fci/prop1etask.h
Examining data/bagel-1.2.2/src/ci/fci/space.cc
Examining data/bagel-1.2.2/src/ci/fci/space.h
Examining data/bagel-1.2.2/src/ci/fci/space_base.cc
Examining data/bagel-1.2.2/src/ci/fci/space_base.h
Examining data/bagel-1.2.2/src/ci/ras/apply_block.h
Examining data/bagel-1.2.2/src/ci/ras/apply_operator.cc
Examining data/bagel-1.2.2/src/ci/ras/apply_operator.h
Examining data/bagel-1.2.2/src/ci/ras/civec_spinop.cc
Examining data/bagel-1.2.2/src/ci/ras/civec_spinop.h
Examining data/bagel-1.2.2/src/ci/ras/civector.cc
Examining data/bagel-1.2.2/src/ci/ras/civector.h
Examining data/bagel-1.2.2/src/ci/ras/civector_base.h
Examining data/bagel-1.2.2/src/ci/ras/civector_impl.cc
Examining data/bagel-1.2.2/src/ci/ras/civector_impl.h
Examining data/bagel-1.2.2/src/ci/ras/denomtask.h
Examining data/bagel-1.2.2/src/ci/ras/determinants.cc
Examining data/bagel-1.2.2/src/ci/ras/determinants.h
Examining data/bagel-1.2.2/src/ci/ras/form_sigma.cc
Examining data/bagel-1.2.2/src/ci/ras/form_sigma.h
Examining data/bagel-1.2.2/src/ci/ras/ras_space.h
Examining data/bagel-1.2.2/src/ci/ras/rasci.cc
Examining data/bagel-1.2.2/src/ci/ras/rasci.h
Examining data/bagel-1.2.2/src/ci/ras/rasci_denom.cc
Examining data/bagel-1.2.2/src/ci/ras/sparse_ij.cc
Examining data/bagel-1.2.2/src/ci/ras/sparse_ij.h
Examining data/bagel-1.2.2/src/ci/zfci/fci_london.cc
Examining data/bagel-1.2.2/src/ci/zfci/fci_london.h
Examining data/bagel-1.2.2/src/ci/zfci/jop_london.cc
Examining data/bagel-1.2.2/src/ci/zfci/jop_london.h
Examining data/bagel-1.2.2/src/ci/zfci/reldvec.cc
Examining data/bagel-1.2.2/src/ci/zfci/reldvec.h
Examining data/bagel-1.2.2/src/ci/zfci/relfci.cc
Examining data/bagel-1.2.2/src/ci/zfci/relfci.h
Examining data/bagel-1.2.2/src/ci/zfci/reljop.cc
Examining data/bagel-1.2.2/src/ci/zfci/reljop.h
Examining data/bagel-1.2.2/src/ci/zfci/relspace.cc
Examining data/bagel-1.2.2/src/ci/zfci/relspace.h
Examining data/bagel-1.2.2/src/ci/zfci/zharrison.cc
Examining data/bagel-1.2.2/src/ci/zfci/zharrison.h
Examining data/bagel-1.2.2/src/ci/zfci/zharrison_compute.cc
Examining data/bagel-1.2.2/src/ci/zfci/zharrison_denom.cc
Examining data/bagel-1.2.2/src/ci/zfci/zharrison_io.cc
Examining data/bagel-1.2.2/src/ci/zfci/zharrison_parallel.cc
Examining data/bagel-1.2.2/src/ci/zfci/zharrison_rdm.cc
Examining data/bagel-1.2.2/src/ci/zfci/zmofile.cc
Examining data/bagel-1.2.2/src/ci/zfci/zmofile.h
Examining data/bagel-1.2.2/src/df/breit2index.cc
Examining data/bagel-1.2.2/src/df/breit2index.h
Examining data/bagel-1.2.2/src/df/complexdf.cc
Examining data/bagel-1.2.2/src/df/complexdf.h
Examining data/bagel-1.2.2/src/df/complexdf_base.cc
Examining data/bagel-1.2.2/src/df/complexdf_base.h
Examining data/bagel-1.2.2/src/df/complexdfinttask.h
Examining data/bagel-1.2.2/src/df/df.cc
Examining data/bagel-1.2.2/src/df/df.h
Examining data/bagel-1.2.2/src/df/dfblock.cc
Examining data/bagel-1.2.2/src/df/dfblock.h
Examining data/bagel-1.2.2/src/df/dfdistt.cc
Examining data/bagel-1.2.2/src/df/dfdistt.h
Examining data/bagel-1.2.2/src/df/dfinttask.h
Examining data/bagel-1.2.2/src/df/dfinttask_old.h
Examining data/bagel-1.2.2/src/df/paralleldf.cc
Examining data/bagel-1.2.2/src/df/paralleldf.h
Examining data/bagel-1.2.2/src/df/relcdmatrix.cc
Examining data/bagel-1.2.2/src/df/relcdmatrix.h
Examining data/bagel-1.2.2/src/df/reldf.cc
Examining data/bagel-1.2.2/src/df/reldf.h
Examining data/bagel-1.2.2/src/df/reldfbase.h
Examining data/bagel-1.2.2/src/df/reldffull.cc
Examining data/bagel-1.2.2/src/df/reldffull.h
Examining data/bagel-1.2.2/src/df/reldffullt.cc
Examining data/bagel-1.2.2/src/df/reldffullt.h
Examining data/bagel-1.2.2/src/df/reldfhalf.cc
Examining data/bagel-1.2.2/src/df/reldfhalf.h
Examining data/bagel-1.2.2/src/global.h
Examining data/bagel-1.2.2/src/grad/cpcasscf.cc
Examining data/bagel-1.2.2/src/grad/cpcasscf.h
Examining data/bagel-1.2.2/src/grad/cphf.cc
Examining data/bagel-1.2.2/src/grad/cphf.h
Examining data/bagel-1.2.2/src/grad/dkhgrad.cc
Examining data/bagel-1.2.2/src/grad/dkhgrad.h
Examining data/bagel-1.2.2/src/grad/finite.cc
Examining data/bagel-1.2.2/src/grad/finite.h
Examining data/bagel-1.2.2/src/grad/force.cc
Examining data/bagel-1.2.2/src/grad/force.h
Examining data/bagel-1.2.2/src/grad/gradeval.cc
Examining data/bagel-1.2.2/src/grad/gradeval.h
Examining data/bagel-1.2.2/src/grad/gradeval_base.cc
Examining data/bagel-1.2.2/src/grad/gradeval_base.h
Examining data/bagel-1.2.2/src/grad/gradinfo.h
Examining data/bagel-1.2.2/src/grad/gradtask.cc
Examining data/bagel-1.2.2/src/grad/gradtask.hpp
Examining data/bagel-1.2.2/src/grad/hess.cc
Examining data/bagel-1.2.2/src/grad/hess.h
Examining data/bagel-1.2.2/src/grad/nacmtype.h
Examining data/bagel-1.2.2/src/integral/_carsph_00.cc
Examining data/bagel-1.2.2/src/integral/_carsph_10.cc
Examining data/bagel-1.2.2/src/integral/_carsph_11.cc
Examining data/bagel-1.2.2/src/integral/_carsph_20.cc
Examining data/bagel-1.2.2/src/integral/_carsph_21.cc
Examining data/bagel-1.2.2/src/integral/_carsph_22.cc
Examining data/bagel-1.2.2/src/integral/_carsph_30.cc
Examining data/bagel-1.2.2/src/integral/_carsph_31.cc
Examining data/bagel-1.2.2/src/integral/_carsph_32.cc
Examining data/bagel-1.2.2/src/integral/_carsph_33.cc
Examining data/bagel-1.2.2/src/integral/_carsph_40.cc
Examining data/bagel-1.2.2/src/integral/_carsph_41.cc
Examining data/bagel-1.2.2/src/integral/_carsph_42.cc
Examining data/bagel-1.2.2/src/integral/_carsph_43.cc
Examining data/bagel-1.2.2/src/integral/_carsph_44.cc
Examining data/bagel-1.2.2/src/integral/_carsph_50.cc
Examining data/bagel-1.2.2/src/integral/_carsph_51.cc
Examining data/bagel-1.2.2/src/integral/_carsph_52.cc
Examining data/bagel-1.2.2/src/integral/_carsph_53.cc
Examining data/bagel-1.2.2/src/integral/_carsph_54.cc
Examining data/bagel-1.2.2/src/integral/_carsph_55.cc
Examining data/bagel-1.2.2/src/integral/_carsph_60.cc
Examining data/bagel-1.2.2/src/integral/_carsph_61.cc
Examining data/bagel-1.2.2/src/integral/_carsph_62.cc
Examining data/bagel-1.2.2/src/integral/_carsph_63.cc
Examining data/bagel-1.2.2/src/integral/_carsph_64.cc
Examining data/bagel-1.2.2/src/integral/_carsph_65.cc
Examining data/bagel-1.2.2/src/integral/_carsph_66.cc
Examining data/bagel-1.2.2/src/integral/_carsph_70.cc
Examining data/bagel-1.2.2/src/integral/_carsph_71.cc
Examining data/bagel-1.2.2/src/integral/_carsph_72.cc
Examining data/bagel-1.2.2/src/integral/_carsph_73.cc
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Examining data/bagel-1.2.2/src/integral/_carsph_75.cc
Examining data/bagel-1.2.2/src/integral/_carsph_76.cc
Examining data/bagel-1.2.2/src/integral/_carsph_77.cc
Examining data/bagel-1.2.2/src/integral/_hrr_20_11.cc
Examining data/bagel-1.2.2/src/integral/_hrr_30_21.cc
Examining data/bagel-1.2.2/src/integral/_hrr_40_22.cc
Examining data/bagel-1.2.2/src/integral/_hrr_40_31.cc
Examining data/bagel-1.2.2/src/integral/_hrr_50_32.cc
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Examining data/bagel-1.2.2/src/integral/_hrr_60_42.cc
Examining data/bagel-1.2.2/src/integral/_hrr_60_51.cc
Examining data/bagel-1.2.2/src/integral/_hrr_70_43.cc
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Examining data/bagel-1.2.2/src/integral/_hrr_80_44.cc
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Examining data/bagel-1.2.2/src/integral/_hrr_80_62.cc
Examining data/bagel-1.2.2/src/integral/_hrr_80_71.cc
Examining data/bagel-1.2.2/src/integral/_hrr_90_54.cc
Examining data/bagel-1.2.2/src/integral/_hrr_90_63.cc
Examining data/bagel-1.2.2/src/integral/_hrr_90_72.cc
Examining data/bagel-1.2.2/src/integral/_hrr_a0_55.cc
Examining data/bagel-1.2.2/src/integral/_hrr_a0_64.cc
Examining data/bagel-1.2.2/src/integral/_hrr_a0_73.cc
Examining data/bagel-1.2.2/src/integral/_hrr_b0_65.cc
Examining data/bagel-1.2.2/src/integral/_hrr_b0_74.cc
Examining data/bagel-1.2.2/src/integral/_hrr_c0_66.cc
Examining data/bagel-1.2.2/src/integral/_hrr_c0_75.cc
Examining data/bagel-1.2.2/src/integral/_hrr_d0_76.cc
Examining data/bagel-1.2.2/src/integral/_hrr_e0_77.cc
Examining data/bagel-1.2.2/src/integral/carsph_gen/carsph_gen.cc
Examining data/bagel-1.2.2/src/integral/carsph_gen/mpreal.h
Examining data/bagel-1.2.2/src/integral/carsphlist.cc
Examining data/bagel-1.2.2/src/integral/carsphlist.h
Examining data/bagel-1.2.2/src/integral/compos/complexangmombatch.cc
Examining data/bagel-1.2.2/src/integral/compos/complexangmombatch.h
Examining data/bagel-1.2.2/src/integral/compos/complexkineticbatch.cc
Examining data/bagel-1.2.2/src/integral/compos/complexkineticbatch.h
Examining data/bagel-1.2.2/src/integral/compos/complexmomentumbatch.cc
Examining data/bagel-1.2.2/src/integral/compos/complexmomentumbatch.h
Examining data/bagel-1.2.2/src/integral/compos/complexoverlapbatch.cc
Examining data/bagel-1.2.2/src/integral/compos/complexoverlapbatch.h
Examining data/bagel-1.2.2/src/integral/compos/covrr.cc
Examining data/bagel-1.2.2/src/integral/compos/point_complexmomentumbatch.cc
Examining data/bagel-1.2.2/src/integral/compos/point_complexmomentumbatch.h
Examining data/bagel-1.2.2/src/integral/compos/point_complexoverlapbatch.cc
Examining data/bagel-1.2.2/src/integral/compos/point_complexoverlapbatch.h
Examining data/bagel-1.2.2/src/integral/comprys/_complex_eriroot_1.cc
Examining data/bagel-1.2.2/src/integral/comprys/_complex_eriroot_10.cc
Examining data/bagel-1.2.2/src/integral/comprys/_complex_eriroot_11.cc
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Examining data/bagel-1.2.2/src/integral/comprys/_complex_eriroot_4.cc
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Examining data/bagel-1.2.2/src/integral/comprys/_complex_eriroot_6.cc
Examining data/bagel-1.2.2/src/integral/comprys/_complex_eriroot_7.cc
Examining data/bagel-1.2.2/src/integral/comprys/_complex_eriroot_8.cc
Examining data/bagel-1.2.2/src/integral/comprys/_complex_eriroot_9.cc
Examining data/bagel-1.2.2/src/integral/comprys/ccompute.cc
Examining data/bagel-1.2.2/src/integral/comprys/comperirootlist.h
Examining data/bagel-1.2.2/src/integral/comprys/complexeribatch.cc
Examining data/bagel-1.2.2/src/integral/comprys/complexeribatch.h
Examining data/bagel-1.2.2/src/integral/comprys/complexmixederibatch.cc
Examining data/bagel-1.2.2/src/integral/comprys/complexmixederibatch.h
Examining data/bagel-1.2.2/src/integral/comprys/complexnaibatch.cc
Examining data/bagel-1.2.2/src/integral/comprys/complexnaibatch.h
Examining data/bagel-1.2.2/src/integral/comprys/complexsmalleribatch.cc
Examining data/bagel-1.2.2/src/integral/comprys/complexsmalleribatch.h
Examining data/bagel-1.2.2/src/integral/comprys/cvrr.cc
Examining data/bagel-1.2.2/src/integral/comprys/interpolate/complex_main.cc
Examining data/bagel-1.2.2/src/integral/comprys/interpolate/complex_rys_gmp.cc
Examining data/bagel-1.2.2/src/integral/comprys/interpolate/gmp_macros.h
Examining data/bagel-1.2.2/src/integral/comprys/interpolate/mpreal.h
Examining data/bagel-1.2.2/src/integral/csort.cc
Examining data/bagel-1.2.2/src/integral/csort_sph.cc
Examining data/bagel-1.2.2/src/integral/ecp/_sphusp_0.cc
Examining data/bagel-1.2.2/src/integral/ecp/_sphusp_1.cc
Examining data/bagel-1.2.2/src/integral/ecp/_sphusp_10.cc
Examining data/bagel-1.2.2/src/integral/ecp/_sphusp_2.cc
Examining data/bagel-1.2.2/src/integral/ecp/_sphusp_3.cc
Examining data/bagel-1.2.2/src/integral/ecp/_sphusp_4.cc
Examining data/bagel-1.2.2/src/integral/ecp/_sphusp_5.cc
Examining data/bagel-1.2.2/src/integral/ecp/_sphusp_6.cc
Examining data/bagel-1.2.2/src/integral/ecp/_sphusp_7.cc
Examining data/bagel-1.2.2/src/integral/ecp/_sphusp_8.cc
Examining data/bagel-1.2.2/src/integral/ecp/_sphusp_9.cc
Examining data/bagel-1.2.2/src/integral/ecp/angularbatch.cc
Examining data/bagel-1.2.2/src/integral/ecp/angularbatch.h
Examining data/bagel-1.2.2/src/integral/ecp/carsph/carsph_tab.cc
Examining data/bagel-1.2.2/src/integral/ecp/ecpbatch.cc
Examining data/bagel-1.2.2/src/integral/ecp/ecpbatch.h
Examining data/bagel-1.2.2/src/integral/ecp/radial.cc
Examining data/bagel-1.2.2/src/integral/ecp/radial.h
Examining data/bagel-1.2.2/src/integral/ecp/soangularbatch.cc
Examining data/bagel-1.2.2/src/integral/ecp/soangularbatch.h
Examining data/bagel-1.2.2/src/integral/ecp/soecpbatch.cc
Examining data/bagel-1.2.2/src/integral/ecp/soecpbatch.h
Examining data/bagel-1.2.2/src/integral/ecp/sphusp_gen/sphusp_gen.cc
Examining data/bagel-1.2.2/src/integral/ecp/sphusplist.h
Examining data/bagel-1.2.2/src/integral/ecp/testcode/ang_proj/main.cc
Examining data/bagel-1.2.2/src/integral/ecp/testcode/ang_proj/mpreal.h
Examining data/bagel-1.2.2/src/integral/ecp/testcode/ang_proj/proj.h
Examining data/bagel-1.2.2/src/integral/ecp/testcode/ang_proj/radial.h
Examining data/bagel-1.2.2/src/integral/ecp/testcode/ang_proj/test.h
Examining data/bagel-1.2.2/src/integral/ecp/testcode/angular/cartgauss.h
Examining data/bagel-1.2.2/src/integral/ecp/testcode/angular/main.cc
Examining data/bagel-1.2.2/src/integral/ecp/testcode/fmlm/main.cc
Examining data/bagel-1.2.2/src/integral/ecp/testcode/sointegral/cartgauss.h
Examining data/bagel-1.2.2/src/integral/ecp/testcode/sointegral/main.cc
Examining data/bagel-1.2.2/src/integral/ecp/testcode/sointegral/radialquad.h
Examining data/bagel-1.2.2/src/integral/ecp/testcode/sointegral/so.h
Examining data/bagel-1.2.2/src/integral/ecp/wigner3j.h
Examining data/bagel-1.2.2/src/integral/ecp/wigner3j_gen/mpreal.h
Examining data/bagel-1.2.2/src/integral/ecp/wigner3j_gen/wigner3j_gen.cc
Examining data/bagel-1.2.2/src/integral/hrr_gen/angular_index.cc
Examining data/bagel-1.2.2/src/integral/hrr_gen/angular_index.h
Examining data/bagel-1.2.2/src/integral/hrr_gen/hrr_template.cc
Examining data/bagel-1.2.2/src/integral/hrr_gen/main.cc
Examining data/bagel-1.2.2/src/integral/hrrlist.cc
Examining data/bagel-1.2.2/src/integral/hrrlist.h
Examining data/bagel-1.2.2/src/integral/integral.h
Examining data/bagel-1.2.2/src/integral/libint/glibint.cc
Examining data/bagel-1.2.2/src/integral/libint/glibint.h
Examining data/bagel-1.2.2/src/integral/libint/libint.cc
Examining data/bagel-1.2.2/src/integral/libint/libint.h
Examining data/bagel-1.2.2/src/integral/os/angmombatch.cc
Examining data/bagel-1.2.2/src/integral/os/angmombatch.h
Examining data/bagel-1.2.2/src/integral/os/gkcompute.cc
Examining data/bagel-1.2.2/src/integral/os/gkineticbatch.h
Examining data/bagel-1.2.2/src/integral/os/gmcompute.cc
Examining data/bagel-1.2.2/src/integral/os/gmomentbatch.h
Examining data/bagel-1.2.2/src/integral/os/gocompute.cc
Examining data/bagel-1.2.2/src/integral/os/goverlapbatch.h
Examining data/bagel-1.2.2/src/integral/os/kineticbatch.cc
Examining data/bagel-1.2.2/src/integral/os/kineticbatch.h
Examining data/bagel-1.2.2/src/integral/os/mmbatch.cc
Examining data/bagel-1.2.2/src/integral/os/mmbatch.h
Examining data/bagel-1.2.2/src/integral/os/momentumbatch.cc
Examining data/bagel-1.2.2/src/integral/os/momentumbatch.h
Examining data/bagel-1.2.2/src/integral/os/multipolebatch.cc
Examining data/bagel-1.2.2/src/integral/os/multipolebatch.h
Examining data/bagel-1.2.2/src/integral/os/multipolebatch_base.cc
Examining data/bagel-1.2.2/src/integral/os/multipolebatch_base.h
Examining data/bagel-1.2.2/src/integral/os/osintegral.cc
Examining data/bagel-1.2.2/src/integral/os/osintegral.h
Examining data/bagel-1.2.2/src/integral/os/overlapbatch.cc
Examining data/bagel-1.2.2/src/integral/os/overlapbatch.h
Examining data/bagel-1.2.2/src/integral/os/ovrr.cc
Examining data/bagel-1.2.2/src/integral/os/point_overlapbatch.cc
Examining data/bagel-1.2.2/src/integral/os/point_overlapbatch.h
Examining data/bagel-1.2.2/src/integral/os/sphmmbatch.cc
Examining data/bagel-1.2.2/src/integral/os/sphmmbatch.h
Examining data/bagel-1.2.2/src/integral/rys/_breitroot_1.cc
Examining data/bagel-1.2.2/src/integral/rys/_breitroot_10.cc
Examining data/bagel-1.2.2/src/integral/rys/_breitroot_11.cc
Examining data/bagel-1.2.2/src/integral/rys/_breitroot_12.cc
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Examining data/bagel-1.2.2/src/integral/rys/_breitroot_3.cc
Examining data/bagel-1.2.2/src/integral/rys/_breitroot_4.cc
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Examining data/bagel-1.2.2/src/integral/rys/_breitroot_9.cc
Examining data/bagel-1.2.2/src/integral/rys/_bvrr_drv.h
Examining data/bagel-1.2.2/src/integral/rys/_eriroot_1.cc
Examining data/bagel-1.2.2/src/integral/rys/_eriroot_10.cc
Examining data/bagel-1.2.2/src/integral/rys/_eriroot_11.cc
Examining data/bagel-1.2.2/src/integral/rys/_eriroot_12.cc
Examining data/bagel-1.2.2/src/integral/rys/_eriroot_13.cc
Examining data/bagel-1.2.2/src/integral/rys/_eriroot_14.cc
Examining data/bagel-1.2.2/src/integral/rys/_eriroot_15.cc
Examining data/bagel-1.2.2/src/integral/rys/_eriroot_16.cc
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Examining data/bagel-1.2.2/src/integral/rys/_eriroot_18.cc
Examining data/bagel-1.2.2/src/integral/rys/_eriroot_19.cc
Examining data/bagel-1.2.2/src/integral/rys/_eriroot_2.cc
Examining data/bagel-1.2.2/src/integral/rys/_eriroot_20.cc
Examining data/bagel-1.2.2/src/integral/rys/_eriroot_21.cc
Examining data/bagel-1.2.2/src/integral/rys/_eriroot_22.cc
Examining data/bagel-1.2.2/src/integral/rys/_eriroot_23.cc
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Examining data/bagel-1.2.2/src/integral/rys/_eriroot_26.cc
Examining data/bagel-1.2.2/src/integral/rys/_eriroot_27.cc
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Examining data/bagel-1.2.2/src/integral/rys/_eriroot_4.cc
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Examining data/bagel-1.2.2/src/integral/rys/_eriroot_7.cc
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Examining data/bagel-1.2.2/src/integral/rys/_eriroot_9.cc
Examining data/bagel-1.2.2/src/integral/rys/_gvrr_drv.h
Examining data/bagel-1.2.2/src/integral/rys/_r2root_1.cc
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Examining data/bagel-1.2.2/src/integral/rys/_s2vrr_drv.h
Examining data/bagel-1.2.2/src/integral/rys/_spin2root_1.cc
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Examining data/bagel-1.2.2/src/integral/rys/_svrr_drv.h
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Examining data/bagel-1.2.2/src/integral/rys/_vrr_drv.h
Examining data/bagel-1.2.2/src/integral/rys/bcompute.cc
Examining data/bagel-1.2.2/src/integral/rys/breitbatch.cc
Examining data/bagel-1.2.2/src/integral/rys/breitbatch.h
Examining data/bagel-1.2.2/src/integral/rys/breitrootlist.h
Examining data/bagel-1.2.2/src/integral/rys/bvrr.cc
Examining data/bagel-1.2.2/src/integral/rys/bvrr_optim.cc
Examining data/bagel-1.2.2/src/integral/rys/compute.cc
Examining data/bagel-1.2.2/src/integral/rys/coulombbatch_base.cc
Examining data/bagel-1.2.2/src/integral/rys/coulombbatch_base.h
Examining data/bagel-1.2.2/src/integral/rys/coulombbatch_energy.cc
Examining data/bagel-1.2.2/src/integral/rys/coulombbatch_energy.h
Examining data/bagel-1.2.2/src/integral/rys/eribatch.cc
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Examining data/bagel-1.2.2/src/integral/rys/eribatch_base.cc
Examining data/bagel-1.2.2/src/integral/rys/eribatch_base.h
Examining data/bagel-1.2.2/src/integral/rys/erirootlist.h
Examining data/bagel-1.2.2/src/integral/rys/gcompute.cc
Examining data/bagel-1.2.2/src/integral/rys/gnaibatch.cc
Examining data/bagel-1.2.2/src/integral/rys/gnaibatch.h
Examining data/bagel-1.2.2/src/integral/rys/gncompute.cc
Examining data/bagel-1.2.2/src/integral/rys/gradbatch.cc
Examining data/bagel-1.2.2/src/integral/rys/gradbatch.h
Examining data/bagel-1.2.2/src/integral/rys/gsmalleribatch.cc
Examining data/bagel-1.2.2/src/integral/rys/gsmalleribatch.h
Examining data/bagel-1.2.2/src/integral/rys/gsmallnaibatch.cc
Examining data/bagel-1.2.2/src/integral/rys/gsmallnaibatch.h
Examining data/bagel-1.2.2/src/integral/rys/gvrr.cc
Examining data/bagel-1.2.2/src/integral/rys/inline.h
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Examining data/bagel-1.2.2/src/integral/rys/interpolate/mpreal.h
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Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_gen15.cc
Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_gen16.cc
Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_gen2.cc
Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_gen3.cc
Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_gen4.cc
Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_gen5.cc
Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_gen6.cc
Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_gen7.cc
Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_gen8.cc
Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_gen9.cc
Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_normq.cc
Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_residualq.cc
Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_residualq1.cc
Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_residualq2.cc
Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_residualq3.cc
Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_residualq4.cc
Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_residualq5.cc
Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_residualq6.cc
Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_sourceq.cc
Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_tasks.h
Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_tasks1.cc
Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_tasks1.h
Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_tasks10.cc
Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_tasks10.h
Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_tasks11.cc
Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_tasks11.h
Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_tasks12.cc
Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_tasks12.h
Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_tasks13.cc
Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_tasks13.h
Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_tasks14.cc
Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_tasks14.h
Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_tasks15.cc
Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_tasks15.h
Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_tasks16.cc
Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_tasks16.h
Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_tasks2.cc
Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_tasks2.h
Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_tasks3.cc
Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_tasks3.h
Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_tasks4.cc
Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_tasks4.h
Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_tasks5.cc
Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_tasks5.h
Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_tasks6.cc
Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_tasks6.h
Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_tasks7.cc
Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_tasks7.h
Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_tasks8.cc
Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_tasks8.h
Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_tasks9.cc
Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_tasks9.h
Examining data/bagel-1.2.2/src/smith/smith.cc
Examining data/bagel-1.2.2/src/smith/smith.h
Examining data/bagel-1.2.2/src/smith/smith_info.cc
Examining data/bagel-1.2.2/src/smith/smith_info.h
Examining data/bagel-1.2.2/src/smith/smith_util.h
Examining data/bagel-1.2.2/src/smith/spinfreebase.cc
Examining data/bagel-1.2.2/src/smith/spinfreebase.h
Examining data/bagel-1.2.2/src/smith/spinfreebase_update.cpp
Examining data/bagel-1.2.2/src/smith/storage.cc
Examining data/bagel-1.2.2/src/smith/storage.h
Examining data/bagel-1.2.2/src/smith/storagekramers.cc
Examining data/bagel-1.2.2/src/smith/storagekramers.h
Examining data/bagel-1.2.2/src/smith/subtask.cc
Examining data/bagel-1.2.2/src/smith/subtask.h
Examining data/bagel-1.2.2/src/smith/task.h
Examining data/bagel-1.2.2/src/smith/tensor.cc
Examining data/bagel-1.2.2/src/smith/tensor.h
Examining data/bagel-1.2.2/src/static.cc
Examining data/bagel-1.2.2/src/test_main.cc
Examining data/bagel-1.2.2/src/testimpl/test_asd.cc
Examining data/bagel-1.2.2/src/testimpl/test_asd_dmrg.cc
Examining data/bagel-1.2.2/src/testimpl/test_casscf.cc
Examining data/bagel-1.2.2/src/testimpl/test_fci.cc
Examining data/bagel-1.2.2/src/testimpl/test_force.cc
Examining data/bagel-1.2.2/src/testimpl/test_ks.cc
Examining data/bagel-1.2.2/src/testimpl/test_localize.cc
Examining data/bagel-1.2.2/src/testimpl/test_london.cc
Examining data/bagel-1.2.2/src/testimpl/test_molden.cc
Examining data/bagel-1.2.2/src/testimpl/test_mp2.cc
Examining data/bagel-1.2.2/src/testimpl/test_nevpt2.cc
Examining data/bagel-1.2.2/src/testimpl/test_opt.cc
Examining data/bagel-1.2.2/src/testimpl/test_prop.cc
Examining data/bagel-1.2.2/src/testimpl/test_ras.cc
Examining data/bagel-1.2.2/src/testimpl/test_rel.cc
Examining data/bagel-1.2.2/src/testimpl/test_response.cc
Examining data/bagel-1.2.2/src/testimpl/test_scf.cc
Examining data/bagel-1.2.2/src/testimpl/test_smith.cc
Examining data/bagel-1.2.2/src/testimpl/test_zfci.cc
Examining data/bagel-1.2.2/src/testimpl/test_pseudospin.cc
Examining data/bagel-1.2.2/src/testimpl/test_zcasscf.cc
Examining data/bagel-1.2.2/src/util/alpha.h
Examining data/bagel-1.2.2/src/util/archive.h
Examining data/bagel-1.2.2/src/util/atommap.cc
Examining data/bagel-1.2.2/src/util/atommap.h
Examining data/bagel-1.2.2/src/util/combination.hpp
Examining data/bagel-1.2.2/src/util/constants.h
Examining data/bagel-1.2.2/src/util/exception.h
Examining data/bagel-1.2.2/src/util/f77.h
Examining data/bagel-1.2.2/src/util/f77_interface.cc
Examining data/bagel-1.2.2/src/util/input/input.cc
Examining data/bagel-1.2.2/src/util/input/input.h
Examining data/bagel-1.2.2/src/util/io/dfpcmo.cc
Examining data/bagel-1.2.2/src/util/io/dfpcmo.h
Examining data/bagel-1.2.2/src/util/io/fileio.h
Examining data/bagel-1.2.2/src/util/io/molden_transforms.cc
Examining data/bagel-1.2.2/src/util/io/moldenin.cc
Examining data/bagel-1.2.2/src/util/io/moldenin.h
Examining data/bagel-1.2.2/src/util/io/moldenio.cc
Examining data/bagel-1.2.2/src/util/io/moldenio.h
Examining data/bagel-1.2.2/src/util/io/moldenout.cc
Examining data/bagel-1.2.2/src/util/io/moldenout.h
Examining data/bagel-1.2.2/src/util/kramers.h
Examining data/bagel-1.2.2/src/util/math/algo.cc
Examining data/bagel-1.2.2/src/util/math/algo.h
Examining data/bagel-1.2.2/src/util/math/aughess.h
Examining data/bagel-1.2.2/src/util/math/bessel.h
Examining data/bagel-1.2.2/src/util/math/bfgs.h
Examining data/bagel-1.2.2/src/util/math/blocksparsematrix.cc
Examining data/bagel-1.2.2/src/util/math/blocksparsematrix.h
Examining data/bagel-1.2.2/src/util/math/btas_interface.cc
Examining data/bagel-1.2.2/src/util/math/btas_interface.h
Examining data/bagel-1.2.2/src/util/math/btas_varray.h
Examining data/bagel-1.2.2/src/util/math/comb.h
Examining data/bagel-1.2.2/src/util/math/csymmatrix.cc
Examining data/bagel-1.2.2/src/util/math/csymmatrix.h
Examining data/bagel-1.2.2/src/util/math/davidson.h
Examining data/bagel-1.2.2/src/util/math/diagmatrix.h
Examining data/bagel-1.2.2/src/util/math/diis.h
Examining data/bagel-1.2.2/src/util/math/distmatrix.cc
Examining data/bagel-1.2.2/src/util/math/distmatrix_base.cc
Examining data/bagel-1.2.2/src/util/math/distmatrix_base.h
Examining data/bagel-1.2.2/src/util/math/distzmatrix.cc
Examining data/bagel-1.2.2/src/util/math/factorial.h
Examining data/bagel-1.2.2/src/util/math/gamma.h
Examining data/bagel-1.2.2/src/util/math/jacobi.cc
Examining data/bagel-1.2.2/src/util/math/jacobi.h
Examining data/bagel-1.2.2/src/util/math/jacobi_pairs.h
Examining data/bagel-1.2.2/src/util/math/legendre.h
Examining data/bagel-1.2.2/src/util/math/linearRM.h
Examining data/bagel-1.2.2/src/util/math/matop.h
Examining data/bagel-1.2.2/src/util/math/matrix.cc
Examining data/bagel-1.2.2/src/util/math/matrix.h
Examining data/bagel-1.2.2/src/util/math/matrix_base.cc
Examining data/bagel-1.2.2/src/util/math/matrix_base.h
Examining data/bagel-1.2.2/src/util/math/matview.cc
Examining data/bagel-1.2.2/src/util/math/matview.h
Examining data/bagel-1.2.2/src/util/math/pairfile.h
Examining data/bagel-1.2.2/src/util/math/preallocarray.cc
Examining data/bagel-1.2.2/src/util/math/preallocarray.h
Examining data/bagel-1.2.2/src/util/math/quatern.cc
Examining data/bagel-1.2.2/src/util/math/quatern.h
Examining data/bagel-1.2.2/src/util/math/quatmatrix.h
Examining data/bagel-1.2.2/src/util/math/sparsematrix.cc
Examining data/bagel-1.2.2/src/util/math/sparsematrix.h
Examining data/bagel-1.2.2/src/util/math/sphharmonics.cc
Examining data/bagel-1.2.2/src/util/math/sphharmonics.h
Examining data/bagel-1.2.2/src/util/math/step_restrict_bfgs.h
Examining data/bagel-1.2.2/src/util/math/transpose.cc
Examining data/bagel-1.2.2/src/util/math/vectorb.h
Examining data/bagel-1.2.2/src/util/math/xyzfile.cc
Examining data/bagel-1.2.2/src/util/math/xyzfile.h
Examining data/bagel-1.2.2/src/util/math/zmatrix.cc
Examining data/bagel-1.2.2/src/util/math/zmatrix.h
Examining data/bagel-1.2.2/src/util/math/zquatev/blocked.cc
Examining data/bagel-1.2.2/src/util/math/zquatev/f77.h
Examining data/bagel-1.2.2/src/util/math/zquatev/supermat.h
Examining data/bagel-1.2.2/src/util/math/zquatev/transpose.cc
Examining data/bagel-1.2.2/src/util/math/zquatev/unblocked.cc
Examining data/bagel-1.2.2/src/util/math/zquatev/zquatev.cc
Examining data/bagel-1.2.2/src/util/math/zquatev/zquatev.h
Examining data/bagel-1.2.2/src/util/math/ztranspose.cc
Examining data/bagel-1.2.2/src/util/mkl_ext.h
Examining data/bagel-1.2.2/src/util/muffle.h
Examining data/bagel-1.2.2/src/util/parallel/mpi_interface.cc
Examining data/bagel-1.2.2/src/util/parallel/mpi_interface.h
Examining data/bagel-1.2.2/src/util/parallel/process.cc
Examining data/bagel-1.2.2/src/util/parallel/process.h
Examining data/bagel-1.2.2/src/util/parallel/resources.cc
Examining data/bagel-1.2.2/src/util/parallel/resources.h
Examining data/bagel-1.2.2/src/util/parallel/rmawindow.cc
Examining data/bagel-1.2.2/src/util/parallel/rmawindow.h
Examining data/bagel-1.2.2/src/util/parallel/scalapack.h
Examining data/bagel-1.2.2/src/util/parallel/staticdist.h
Examining data/bagel-1.2.2/src/util/prim_op.h
Examining data/bagel-1.2.2/src/util/prim_op_var.h
Examining data/bagel-1.2.2/src/util/serialization.h
Examining data/bagel-1.2.2/src/util/simple.h
Examining data/bagel-1.2.2/src/util/spinorinfo.h
Examining data/bagel-1.2.2/src/util/string_util.h
Examining data/bagel-1.2.2/src/util/taskqueue.h
Examining data/bagel-1.2.2/src/util/timer.h
Examining data/bagel-1.2.2/src/util/unpack.h
Examining data/bagel-1.2.2/src/util/vec.h
Examining data/bagel-1.2.2/src/wfn/ciwfn.h
Examining data/bagel-1.2.2/src/wfn/coeff.cc
Examining data/bagel-1.2.2/src/wfn/coeff.h
Examining data/bagel-1.2.2/src/wfn/contractmat.cc
Examining data/bagel-1.2.2/src/wfn/contractmat.h
Examining data/bagel-1.2.2/src/wfn/fmminfo.cc
Examining data/bagel-1.2.2/src/wfn/fmminfo.h
Examining data/bagel-1.2.2/src/wfn/geometry.cc
Examining data/bagel-1.2.2/src/wfn/geometry.h
Examining data/bagel-1.2.2/src/wfn/get_energy.cc
Examining data/bagel-1.2.2/src/wfn/get_energy.h
Examining data/bagel-1.2.2/src/wfn/hcoreinfo.cc
Examining data/bagel-1.2.2/src/wfn/hcoreinfo.h
Examining data/bagel-1.2.2/src/wfn/localization.cc
Examining data/bagel-1.2.2/src/wfn/localization.h
Examining data/bagel-1.2.2/src/wfn/method.h
Examining data/bagel-1.2.2/src/wfn/rdm.cc
Examining data/bagel-1.2.2/src/wfn/rdm.h
Examining data/bagel-1.2.2/src/wfn/reference.cc
Examining data/bagel-1.2.2/src/wfn/reference.h
Examining data/bagel-1.2.2/src/wfn/relreference.cc
Examining data/bagel-1.2.2/src/wfn/relreference.h
Examining data/bagel-1.2.2/src/wfn/zcoeff.cc
Examining data/bagel-1.2.2/src/wfn/zcoeff.h
Examining data/bagel-1.2.2/src/wfn/zreference.cc
Examining data/bagel-1.2.2/src/wfn/zreference.h

FINAL RESULTS:

data/bagel-1.2.2/btas/ordinal.h:212:42:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
      friend class boost::serialization::access;
data/bagel-1.2.2/btas/varray/varray.h:106:39:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
   friend class boost::serialization::access;
data/bagel-1.2.2/src/asd/dmrg/asd_dmrg.h:68:154:  [4] (shell) system:
  This causes a new program to execute and is difficult to use safely
  (CWE-78). try using a library call that implements the same functionality
  if available.
    virtual std::shared_ptr<DMRG_Block1> decimate_block(std::shared_ptr<PTree> input, std::shared_ptr<const Reference> ref, std::shared_ptr<DMRG_Block1> system, std::shared_ptr<DMRG_Block1> environment, const int site) = 0;
data/bagel-1.2.2/src/asd/dmrg/rasd.cc:317:128:  [4] (shell) system:
  This causes a new program to execute and is difficult to use safely
  (CWE-78). try using a library call that implements the same functionality
  if available.
shared_ptr<DMRG_Block1> RASD::decimate_block(shared_ptr<PTree> input, shared_ptr<const Reference> ref, shared_ptr<DMRG_Block1> system, shared_ptr<DMRG_Block1> environment, const int site) {
data/bagel-1.2.2/src/asd/dmrg/rasd.cc:328:10:  [4] (shell) system:
  This causes a new program to execute and is difficult to use safely
  (CWE-78). try using a library call that implements the same functionality
  if available.
    if (!system) {
data/bagel-1.2.2/src/asd/dmrg/rasd.cc:360:50:  [4] (shell) system:
  This causes a new program to execute and is difficult to use safely
  (CWE-78). try using a library call that implements the same functionality
  if available.
      auto block_pair = make_shared<DMRG_Block2>(system, environment);
data/bagel-1.2.2/src/asd/dmrg/rasd.h:39:146:  [4] (shell) system:
  This causes a new program to execute and is difficult to use safely
  (CWE-78). try using a library call that implements the same functionality
  if available.
    std::shared_ptr<DMRG_Block1> decimate_block(std::shared_ptr<PTree> input, std::shared_ptr<const Reference> ref, std::shared_ptr<DMRG_Block1> system, std::shared_ptr<DMRG_Block1> environment, const int site) override;
data/bagel-1.2.2/src/ci/ciutil/ciblock.h:48:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/ci/ciutil/cistring.h:49:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/ci/ciutil/cistring.h:77:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/ci/ciutil/cistring.h:104:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/ci/ciutil/cistring.h:223:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/ci/ciutil/cistring.h:261:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/ci/ciutil/cistringmap.h:41:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/ci/ciutil/cistringmap.h:51:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/ci/ciutil/cistringmap.h:106:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/ci/ciutil/cistringset.h:61:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/ci/ciutil/cistringspace.h:102:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/ci/ciutil/determinants_base.h:64:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/ci/fci/civec.h:63:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/ci/fci/determinants.h:43:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/ci/fci/distfci.h:49:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/ci/fci/dvec.h:72:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/ci/fci/fci.h:43:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/ci/fci/harrison.h:53:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/ci/fci/knowles.h:53:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/ci/fci/space.h:41:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/ci/fci/space_base.h:38:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/ci/ras/ras_space.h:43:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/ci/zfci/fci_london.h:38:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/ci/zfci/reldvec.h:43:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/ci/zfci/relfci.h:42:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/ci/zfci/relspace.h:39:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/ci/zfci/zharrison.h:97:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/mat1e/fermicontact.h:41:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/mat1e/giao/zhcore.h:40:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/mat1e/giao/zkinetic.h:39:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/mat1e/giao/zoverlap.h:39:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/mat1e/hcore.h:42:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/mat1e/hso.h:40:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/mat1e/kinetic.h:39:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/mat1e/matrix1e.h:47:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/mat1e/nai.h:39:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/mat1e/overlap.h:39:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/mat1e/sohcore.h:43:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/mat1e/spindipole.h:42:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/molecule/atom.h:75:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/molecule/ecp.h:46:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/molecule/molecule.h:82:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/molecule/petite.h:52:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/molecule/shell.h:67:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/molecule/shell_base.h:42:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/molecule/shellecp.h:41:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/molecule/shellpair.h:50:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/molecule/soecp.h:43:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/opt/qmmm.cc:39:3:  [4] (shell) system:
  This causes a new program to execute and is difficult to use safely
  (CWE-78). try using a library call that implements the same functionality
  if available.
  system("mv -f tinkin.xyz tinkin.xyz.old");
data/bagel-1.2.2/src/opt/qmmm.cc:77:5:  [4] (shell) system:
  This causes a new program to execute and is difficult to use safely
  (CWE-78). try using a library call that implements the same functionality
  if available.
    system("testgrad -k tinkin.key tinkin.xyz y n n > gradientls");
data/bagel-1.2.2/src/opt/qmmm.cc:78:5:  [4] (shell) system:
  This causes a new program to execute and is difficult to use safely
  (CWE-78). try using a library call that implements the same functionality
  if available.
    system("grep 'Total Potential' gradientls | cut -c 29- > ../energy_qmmm");
data/bagel-1.2.2/src/opt/qmmm.cc:82:5:  [4] (shell) system:
  This causes a new program to execute and is difficult to use safely
  (CWE-78). try using a library call that implements the same functionality
  if available.
    system(pp.c_str());
data/bagel-1.2.2/src/opt/qmmm.cc:91:5:  [4] (shell) system:
  This causes a new program to execute and is difficult to use safely
  (CWE-78). try using a library call that implements the same functionality
  if available.
    system("testgrad -k tinkin.key tinkin.xyz y n n > gradientls");
data/bagel-1.2.2/src/opt/qmmm.cc:92:5:  [4] (shell) system:
  This causes a new program to execute and is difficult to use safely
  (CWE-78). try using a library call that implements the same functionality
  if available.
    system("grep 'Total Potential' gradientls | cut -c 29- > ../energy_qm");
data/bagel-1.2.2/src/opt/qmmm.cc:96:5:  [4] (shell) system:
  This causes a new program to execute and is difficult to use safely
  (CWE-78). try using a library call that implements the same functionality
  if available.
    system(pp.c_str());
data/bagel-1.2.2/src/scf/fmm/fmm.h:65:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/scf/giaohf/fock_london.h:47:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/scf/giaohf/rhf_london.h:49:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/scf/hf/fock.h:48:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/scf/hf/fock_base.h:52:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/scf/hf/rhf.h:48:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/scf/hf/uhf.h:51:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/scf/scf_base.h:85:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/scf/sohf/sofock.h:45:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/scf/sohf/soscf.h:47:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/smith/indexrange.h:52:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/smith/indexrange.h:91:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/smith/multitensor.h:48:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/smith/smith_info.h:77:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/smith/storage.h:109:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/smith/storagekramers.h:139:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/smith/tensor.h:73:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/util/input/input.h:90:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/util/kramers.h:47:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/util/kramers.h:112:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/util/math/btas_varray.h:106:39:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
   friend class boost::serialization::access;
data/bagel-1.2.2/src/util/math/csymmatrix.h:42:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/util/math/davidson.h:51:44:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
        friend class boost::serialization::access;
data/bagel-1.2.2/src/util/math/davidson.h:73:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/util/math/diis.h:54:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/util/math/matrix.h:47:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/util/math/matrix.h:159:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/util/math/matrix_base.h:67:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/util/math/vectorb.h:104:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/util/math/zmatrix.h:44:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/util/math/zmatrix.h:161:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/util/vec.h:41:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/wfn/ciwfn.h:53:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/wfn/coeff.h:41:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/wfn/fmminfo.h:40:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/wfn/geometry.h:74:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/wfn/hcoreinfo.h:48:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/wfn/method.h:43:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/wfn/rdm.h:49:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/wfn/reference.h:79:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/wfn/relreference.h:49:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/wfn/zcoeff.h:58:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/wfn/zcoeff.h:92:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/wfn/zcoeff.h:129:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/wfn/zcoeff.h:165:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/wfn/zreference.h:40:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
    friend class boost::serialization::access;
data/bagel-1.2.2/src/global.h:58:26:  [3] (buffer) getenv:
  Environment variables are untrustable input if they can be set by an
  attacker. They can have any content and length, and the same variable can
  be set more than once (CWE-807, CWE-20). Check environment variables
  carefully before using them.
  char const* val = std::getenv(head);
data/bagel-1.2.2/src/global.h:65:26:  [3] (buffer) getenv:
  Environment variables are untrustable input if they can be set by an
  attacker. They can have any content and length, and the same variable can
  be set more than once (CWE-807, CWE-20). Check environment variables
  carefully before using them.
  char const* val = std::getenv(head);
data/bagel-1.2.2/src/integral/carsph_gen/mpreal.h:417:25:  [3] (random) random:
  This function is not sufficiently random for security-related functions
  such as key and nonce creation (CWE-327). Use a more secure technique for
  acquiring random values.
    friend const mpreal random(unsigned int seed = 0);
data/bagel-1.2.2/src/integral/carsph_gen/mpreal.h:2823:21:  [3] (random) random:
  This function is not sufficiently random for security-related functions
  such as key and nonce creation (CWE-327). Use a more secure technique for
  acquiring random values.
inline const mpreal random(unsigned int seed)
data/bagel-1.2.2/src/integral/carsph_gen/mpreal.h:2841:27:  [3] (random) srand:
  This function is not sufficiently random for security-related functions
  such as key and nonce creation (CWE-327). Use a more secure technique for
  acquiring random values.
    if(seed != 0)    std::srand(seed);
data/bagel-1.2.2/src/integral/comprys/interpolate/complex_main.cc:67:19:  [3] (random) random:
  This function is not sufficiently random for security-related functions
  such as key and nonce creation (CWE-327). Use a more secure technique for
  acquiring random values.
  complex<double> random (realdouble, imagdouble);
data/bagel-1.2.2/src/integral/comprys/interpolate/complex_main.cc:68:10:  [3] (random) random:
  This function is not sufficiently random for security-related functions
  such as key and nonce creation (CWE-327). Use a more secure technique for
  acquiring random values.
  return random;
data/bagel-1.2.2/src/integral/comprys/interpolate/complex_main.cc:280:7:  [3] (random) srand:
  This function is not sufficiently random for security-related functions
  such as key and nonce creation (CWE-327). Use a more secure technique for
  acquiring random values.
      srand (seed);
data/bagel-1.2.2/src/integral/comprys/interpolate/complex_rys_gmp.cc:134:19:  [3] (random) random:
  This function is not sufficiently random for security-related functions
  such as key and nonce creation (CWE-327). Use a more secure technique for
  acquiring random values.
  complex<mpreal> random (realdouble, imagdouble);
data/bagel-1.2.2/src/integral/comprys/interpolate/complex_rys_gmp.cc:135:10:  [3] (random) random:
  This function is not sufficiently random for security-related functions
  such as key and nonce creation (CWE-327). Use a more secure technique for
  acquiring random values.
  return random;
data/bagel-1.2.2/src/integral/comprys/interpolate/complex_rys_gmp.cc:153:19:  [3] (random) random:
  This function is not sufficiently random for security-related functions
  such as key and nonce creation (CWE-327). Use a more secure technique for
  acquiring random values.
  complex<mpreal> random (realdouble, imagdouble);
data/bagel-1.2.2/src/integral/comprys/interpolate/complex_rys_gmp.cc:154:10:  [3] (random) random:
  This function is not sufficiently random for security-related functions
  such as key and nonce creation (CWE-327). Use a more secure technique for
  acquiring random values.
  return random;
data/bagel-1.2.2/src/integral/comprys/interpolate/complex_rys_gmp.cc:601:7:  [3] (random) srand:
  This function is not sufficiently random for security-related functions
  such as key and nonce creation (CWE-327). Use a more secure technique for
  acquiring random values.
      srand (time(NULL));
data/bagel-1.2.2/src/integral/comprys/interpolate/complex_rys_gmp.cc:694:7:  [3] (random) srand:
  This function is not sufficiently random for security-related functions
  such as key and nonce creation (CWE-327). Use a more secure technique for
  acquiring random values.
      srand (time(NULL));
data/bagel-1.2.2/src/integral/comprys/interpolate/mpreal.h:417:25:  [3] (random) random:
  This function is not sufficiently random for security-related functions
  such as key and nonce creation (CWE-327). Use a more secure technique for
  acquiring random values.
    friend const mpreal random(unsigned int seed = 0);
data/bagel-1.2.2/src/integral/comprys/interpolate/mpreal.h:2823:21:  [3] (random) random:
  This function is not sufficiently random for security-related functions
  such as key and nonce creation (CWE-327). Use a more secure technique for
  acquiring random values.
inline const mpreal random(unsigned int seed)
data/bagel-1.2.2/src/integral/comprys/interpolate/mpreal.h:2841:27:  [3] (random) srand:
  This function is not sufficiently random for security-related functions
  such as key and nonce creation (CWE-327). Use a more secure technique for
  acquiring random values.
    if(seed != 0)    std::srand(seed);
data/bagel-1.2.2/src/integral/ecp/testcode/ang_proj/mpreal.h:417:25:  [3] (random) random:
  This function is not sufficiently random for security-related functions
  such as key and nonce creation (CWE-327). Use a more secure technique for
  acquiring random values.
    friend const mpreal random(unsigned int seed = 0);
data/bagel-1.2.2/src/integral/ecp/testcode/ang_proj/mpreal.h:2823:21:  [3] (random) random:
  This function is not sufficiently random for security-related functions
  such as key and nonce creation (CWE-327). Use a more secure technique for
  acquiring random values.
inline const mpreal random(unsigned int seed)
data/bagel-1.2.2/src/integral/ecp/testcode/ang_proj/mpreal.h:2841:27:  [3] (random) srand:
  This function is not sufficiently random for security-related functions
  such as key and nonce creation (CWE-327). Use a more secure technique for
  acquiring random values.
    if(seed != 0)    std::srand(seed);
data/bagel-1.2.2/src/integral/ecp/wigner3j_gen/mpreal.h:417:25:  [3] (random) random:
  This function is not sufficiently random for security-related functions
  such as key and nonce creation (CWE-327). Use a more secure technique for
  acquiring random values.
    friend const mpreal random(unsigned int seed = 0);
data/bagel-1.2.2/src/integral/ecp/wigner3j_gen/mpreal.h:2823:21:  [3] (random) random:
  This function is not sufficiently random for security-related functions
  such as key and nonce creation (CWE-327). Use a more secure technique for
  acquiring random values.
inline const mpreal random(unsigned int seed)
data/bagel-1.2.2/src/integral/ecp/wigner3j_gen/mpreal.h:2841:27:  [3] (random) srand:
  This function is not sufficiently random for security-related functions
  such as key and nonce creation (CWE-327). Use a more secure technique for
  acquiring random values.
    if(seed != 0)    std::srand(seed);
data/bagel-1.2.2/src/integral/rys/interpolate/mpreal.h:417:25:  [3] (random) random:
  This function is not sufficiently random for security-related functions
  such as key and nonce creation (CWE-327). Use a more secure technique for
  acquiring random values.
    friend const mpreal random(unsigned int seed = 0);
data/bagel-1.2.2/src/integral/rys/interpolate/mpreal.h:2823:21:  [3] (random) random:
  This function is not sufficiently random for security-related functions
  such as key and nonce creation (CWE-327). Use a more secure technique for
  acquiring random values.
inline const mpreal random(unsigned int seed)
data/bagel-1.2.2/src/integral/rys/interpolate/mpreal.h:2841:27:  [3] (random) srand:
  This function is not sufficiently random for security-related functions
  such as key and nonce creation (CWE-327). Use a more secure technique for
  acquiring random values.
    if(seed != 0)    std::srand(seed);
data/bagel-1.2.2/src/ci/fci/determinants.cc:119:22:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
  assert(nalpha*2 == open.size());
data/bagel-1.2.2/src/ci/fci/determinants.cc:124:48:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
    for (int i =0; i!=nalpha; ++i) ialpha.flip(open[i]);
data/bagel-1.2.2/src/ci/fci/determinants.cc:125:27:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
    for (int i=nalpha; i!=open.size(); ++i) ibeta.flip(open[i]);
data/bagel-1.2.2/src/ci/fci/determinants.cc:125:56:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
    for (int i=nalpha; i!=open.size(); ++i) ibeta.flip(open[i]);
data/bagel-1.2.2/src/ci/fci/determinants.cc:137:36:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
  } while (boost::next_combination(open.begin(), open.begin()+nalpha, open.end()));
data/bagel-1.2.2/src/ci/fci/determinants.cc:137:50:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
  } while (boost::next_combination(open.begin(), open.begin()+nalpha, open.end()));
data/bagel-1.2.2/src/ci/fci/determinants.cc:137:71:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
  } while (boost::next_combination(open.begin(), open.begin()+nalpha, open.end()));
data/bagel-1.2.2/src/ci/ras/determinants.cc:148:22:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
  assert(nalpha*2 == open.size());
data/bagel-1.2.2/src/ci/ras/determinants.cc:153:48:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
    for (int i =0; i!=nalpha; ++i) ialpha.flip(open[i]);
data/bagel-1.2.2/src/ci/ras/determinants.cc:154:27:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
    for (int i=nalpha; i!=open.size(); ++i) ibeta.flip(open[i]);
data/bagel-1.2.2/src/ci/ras/determinants.cc:154:56:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
    for (int i=nalpha; i!=open.size(); ++i) ibeta.flip(open[i]);
data/bagel-1.2.2/src/ci/ras/determinants.cc:162:36:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
  } while (boost::next_combination(open.begin(), open.begin()+nalpha, open.end()));
data/bagel-1.2.2/src/ci/ras/determinants.cc:162:50:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
  } while (boost::next_combination(open.begin(), open.begin()+nalpha, open.end()));
data/bagel-1.2.2/src/ci/ras/determinants.cc:162:71:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
  } while (boost::next_combination(open.begin(), open.begin()+nalpha, open.end()));
data/bagel-1.2.2/src/integral/carsph_gen/carsph_gen.cc:245:9:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
    ofs.open(filename.c_str());
data/bagel-1.2.2/src/integral/carsph_gen/mpreal.h:1655:5:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
    char format[128];
data/bagel-1.2.2/src/integral/carsph_gen/mpreal.h:1660:5:  [2] (buffer) sprintf:
  Does not check for buffer overflows (CWE-120). Use sprintf_s, snprintf, or
  vsnprintf. Risk is low because the source has a constant maximum length.
    sprintf(format,"%%.%dRNg",digits);        // Default format
data/bagel-1.2.2/src/integral/comprys/interpolate/complex_main.cc:545:9:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
    ofs.open(("../" + filename).c_str());
data/bagel-1.2.2/src/integral/comprys/interpolate/mpreal.h:1655:5:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
    char format[128];
data/bagel-1.2.2/src/integral/comprys/interpolate/mpreal.h:1660:5:  [2] (buffer) sprintf:
  Does not check for buffer overflows (CWE-120). Use sprintf_s, snprintf, or
  vsnprintf. Risk is low because the source has a constant maximum length.
    sprintf(format,"%%.%dRNg",digits);        // Default format
data/bagel-1.2.2/src/integral/ecp/carsph/carsph_tab.cc:189:9:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
    ofs.open(filename.c_str());
data/bagel-1.2.2/src/integral/ecp/sphusp_gen/sphusp_gen.cc:62:7:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
  ofs.open(filename.c_str());
data/bagel-1.2.2/src/integral/ecp/testcode/ang_proj/mpreal.h:1655:5:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
    char format[128];
data/bagel-1.2.2/src/integral/ecp/testcode/ang_proj/mpreal.h:1660:5:  [2] (buffer) sprintf:
  Does not check for buffer overflows (CWE-120). Use sprintf_s, snprintf, or
  vsnprintf. Risk is low because the source has a constant maximum length.
    sprintf(format,"%%.%dRNg",digits);        // Default format
data/bagel-1.2.2/src/integral/ecp/wigner3j_gen/mpreal.h:1655:5:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
    char format[128];
data/bagel-1.2.2/src/integral/ecp/wigner3j_gen/mpreal.h:1660:5:  [2] (buffer) sprintf:
  Does not check for buffer overflows (CWE-120). Use sprintf_s, snprintf, or
  vsnprintf. Risk is low because the source has a constant maximum length.
    sprintf(format,"%%.%dRNg",digits);        // Default format
data/bagel-1.2.2/src/integral/ecp/wigner3j_gen/wigner3j_gen.cc:110:7:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
  ofs.open(filename.c_str());
data/bagel-1.2.2/src/integral/hrr_gen/main.cc:251:11:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
      ofs.open(filename.c_str());
data/bagel-1.2.2/src/integral/rys/interpolate/main.cc:335:9:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
    ofs.open(filename.c_str());
data/bagel-1.2.2/src/integral/rys/interpolate/mpreal.h:1655:5:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
    char format[128];
data/bagel-1.2.2/src/integral/rys/interpolate/mpreal.h:1660:5:  [2] (buffer) sprintf:
  Does not check for buffer overflows (CWE-120). Use sprintf_s, snprintf, or
  vsnprintf. Risk is low because the source has a constant maximum length.
    sprintf(format,"%%.%dRNg",digits);        // Default format
data/bagel-1.2.2/src/integral/sort_gen/cmain.cc:32:7:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
  ofs.open(filename.c_str());
data/bagel-1.2.2/src/integral/sort_gen/main.cc:32:7:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
  ofs.open(filename.c_str());
data/bagel-1.2.2/src/util/parallel/mpi_interface.cc:64:5:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
    char name[maxlen];
data/bagel-1.2.2/btas/generic/contract.h:122:16:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
   assert(std::equal(std::begin(__sort_permute_indexC), std::end(__sort_permute_indexC), std::begin(__sort_indexC)));
data/bagel-1.2.2/btas/generic/contract.h:127:13:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
   if(!std::equal(std::begin(aA), std::end(aA), std::begin(__permute_indexA)))
data/bagel-1.2.2/btas/generic/contract.h:136:13:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
   if(!std::equal(std::begin(aB), std::end(aB), std::begin(__permute_indexB)))
data/bagel-1.2.2/btas/generic/contract.h:156:13:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
   if(!std::equal(std::begin(aC), std::end(aC), std::begin(__permute_indexC)))
data/bagel-1.2.2/btas/generic/gemm_impl.h:569:20:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
       assert(std::equal(std::begin(extentA)+M, std::end(extentA), std::begin(extentB)));
data/bagel-1.2.2/btas/generic/gemm_impl.h:571:20:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
       assert(std::equal(std::begin(extentA)+M, std::end(extentA), std::begin(extentB)+N));
data/bagel-1.2.2/btas/generic/gemm_impl.h:573:20:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
       assert(std::equal(std::begin(extentA), std::begin(extentA)+K, std::begin(extentB)));
data/bagel-1.2.2/btas/generic/gemm_impl.h:575:20:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
       assert(std::equal(std::begin(extentA), std::begin(extentA)+K, std::begin(extentB)+N));
data/bagel-1.2.2/btas/generic/gemm_impl.h:610:20:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
       assert(std::equal(std::begin(extentA), std::begin(extentA)+M, std::begin(extentC)));
data/bagel-1.2.2/btas/generic/gemm_impl.h:612:20:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
       assert(std::equal(std::begin(extentA)+K, std::end(extentA), std::begin(extentC)));
data/bagel-1.2.2/btas/generic/gemm_impl.h:614:20:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
       assert(std::equal(std::begin(extentB)+K, std::end(extentB), std::begin(extentC)+M));
data/bagel-1.2.2/btas/generic/gemm_impl.h:616:20:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
       assert(std::equal(std::begin(extentB), std::begin(extentB)+N, std::begin(extentC)+M));
data/bagel-1.2.2/btas/generic/gemm_impl.h:627:19:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
      assert(std::equal(std::begin(extentC), std::end(extentC), std::begin(extent(C))));
data/bagel-1.2.2/btas/generic/gemv_impl.h:393:19:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
      assert(std::equal(std::begin(extentA)+rankY, std::end(extentA), std::begin(extentX)));
data/bagel-1.2.2/btas/generic/gemv_impl.h:402:19:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
      assert(std::equal(std::begin(extentA), std::begin(extentA)+rankX, std::begin(extentX)));
data/bagel-1.2.2/btas/generic/gemv_impl.h:425:19:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
      assert(std::equal(std::begin(extentY), std::end(extentY), std::begin(extent(Y))));
data/bagel-1.2.2/btas/generic/ger_impl.h:282:19:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
      assert(std::equal(std::begin(extentA), std::end(extentA), std::begin(extent(A))));
data/bagel-1.2.2/btas/generic/permute.h:64:13:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
   if (std::equal(std::begin(aX), std::end(aX), std::begin(aY)))
data/bagel-1.2.2/btas/generic/permute.h:83:19:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
      assert(std::equal(std::begin(aX_sorted), std::end(aX_sorted), std::begin(aY_sorted)));
data/bagel-1.2.2/btas/range.h:1087:21:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
        return std::equal(std::cbegin(r1_extent), std::cend(r1_extent),
data/bagel-1.2.2/btas/range.h:1090:21:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
        return std::equal(std::cbegin(r1_extent), std::cend(r1_extent),
data/bagel-1.2.2/btas/tensor.h:568:22:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
        assert( std::equal(range_.begin(), range_.end(), x.range_.begin()) );
data/bagel-1.2.2/btas/tensor.h:586:18:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
            std::equal(range_.begin(), range_.end(), x.range_.begin()));
data/bagel-1.2.2/btas/tensor.h:688:58:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
        return congruent(t1.range(), t2.range()) && std::equal(std::cbegin(t1.storage()),
data/bagel-1.2.2/btas/tensor.h:699:21:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
        return std::equal(vt1.cbegin(), vt1.cend(), vt2.cbegin());
data/bagel-1.2.2/btas/tensorview.h:469:22:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
        assert( std::equal(range_.begin(), range_.end(), x.range_.begin()) );
data/bagel-1.2.2/btas/tensorview.h:487:18:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
            std::equal(range_.begin(), range_.end(), x.range_.begin()));
data/bagel-1.2.2/btas/varray/varray.h:385:15:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
  return std::equal(a.begin(), a.end(), b.begin());
data/bagel-1.2.2/btas/varray/varray.h:429:15:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
  return std::equal(a.begin(), a.end(), b.begin());
data/bagel-1.2.2/src/asd/dmrg/rasd.cc:61:5:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
    read(*restricted->begin(), input->get<int>("nclosed"));
data/bagel-1.2.2/src/asd/dmrg/rasd.cc:65:5:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
    read(*iter, input->get<int>("nclosed"));
data/bagel-1.2.2/src/integral/carsph_gen/mpreal.h:1685:17:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
        slen  = strlen(s);
data/bagel-1.2.2/src/integral/carsph_gen/mpreal.h:1686:17:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
        nslen = strlen(ns);
data/bagel-1.2.2/src/integral/comprys/interpolate/mpreal.h:1685:17:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
        slen  = strlen(s);
data/bagel-1.2.2/src/integral/comprys/interpolate/mpreal.h:1686:17:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
        nslen = strlen(ns);
data/bagel-1.2.2/src/integral/ecp/testcode/ang_proj/mpreal.h:1685:17:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
        slen  = strlen(s);
data/bagel-1.2.2/src/integral/ecp/testcode/ang_proj/mpreal.h:1686:17:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
        nslen = strlen(ns);
data/bagel-1.2.2/src/integral/ecp/wigner3j_gen/mpreal.h:1685:17:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
        slen  = strlen(s);
data/bagel-1.2.2/src/integral/ecp/wigner3j_gen/mpreal.h:1686:17:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
        nslen = strlen(ns);
data/bagel-1.2.2/src/integral/rys/interpolate/mpreal.h:1685:17:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
        slen  = strlen(s);
data/bagel-1.2.2/src/integral/rys/interpolate/mpreal.h:1686:17:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
        nslen = strlen(ns);
data/bagel-1.2.2/src/testimpl/test_molden.cc:82:9:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
    mfs.read();
data/bagel-1.2.2/src/util/io/moldenin.cc:111:16:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
void MoldenIn::read() {
data/bagel-1.2.2/src/util/io/moldenin.h:53:10:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
    void read();
data/bagel-1.2.2/src/util/math/btas_varray.h:398:15:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
  return std::equal(a.begin(), a.end(), b.begin());
data/bagel-1.2.2/src/util/math/btas_varray.h:442:15:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
  return std::equal(a.begin(), a.end(), b.begin());
data/bagel-1.2.2/src/wfn/geometry.cc:96:9:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
    mfs.read();
data/bagel-1.2.2/src/wfn/geometry.cc:340:11:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
    if (!(equal(external_.begin(), external_.end(), inmer->external_.begin()))) {
data/bagel-1.2.2/src/wfn/reference.cc:76:7:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
  mfs.read();

ANALYSIS SUMMARY:

Hits = 217
Lines analyzed = 1357999 in approximately 111.24 seconds (12208 lines/second)
Physical Source Lines of Code (SLOC) = 1246646
Hits@level = [0]   3 [1]  49 [2]  34 [3]  26 [4] 108 [5]   0
Hits@level+ = [0+] 220 [1+] 217 [2+] 168 [3+] 134 [4+] 108 [5+]   0
Hits/KSLOC@level+ = [0+] 0.176474 [1+] 0.174067 [2+] 0.134762 [3+] 0.107488 [4+] 0.0866325 [5+]   0
Dot directories skipped = 1 (--followdotdir overrides)
Minimum risk level = 1
Not every hit is necessarily a security vulnerability.
There may be other security vulnerabilities; review your code!
See 'Secure Programming HOWTO'
(https://dwheeler.com/secure-programs) for more information.