Flawfinder version 2.0.10, (C) 2001-2019 David A. Wheeler. Number of rules (primarily dangerous function names) in C/C++ ruleset: 223 Examining data/bagel-1.2.2/btas/array_adaptor.h Examining data/bagel-1.2.2/btas/btas.h Examining data/bagel-1.2.2/btas/corange.h Examining data/bagel-1.2.2/btas/defaults.h Examining data/bagel-1.2.2/btas/error.h Examining data/bagel-1.2.2/btas/generic/axpy_impl.h Examining data/bagel-1.2.2/btas/generic/contract.h Examining data/bagel-1.2.2/btas/generic/dot_impl.h Examining data/bagel-1.2.2/btas/generic/gemm_impl.h Examining data/bagel-1.2.2/btas/generic/gemv_impl.h Examining data/bagel-1.2.2/btas/generic/ger_impl.h Examining data/bagel-1.2.2/btas/generic/numeric_type.h Examining data/bagel-1.2.2/btas/generic/permute.h Examining data/bagel-1.2.2/btas/generic/scal_impl.h Examining data/bagel-1.2.2/btas/generic/tensor_iterator_wrapper.h Examining data/bagel-1.2.2/btas/index_traits.h Examining data/bagel-1.2.2/btas/optimize/contract.h Examining data/bagel-1.2.2/btas/ordinal.h Examining data/bagel-1.2.2/btas/range.h Examining data/bagel-1.2.2/btas/range_iterator.h Examining data/bagel-1.2.2/btas/range_traits.h Examining data/bagel-1.2.2/btas/serialization.h Examining data/bagel-1.2.2/btas/special/permute.h Examining data/bagel-1.2.2/btas/special/reindex.h Examining data/bagel-1.2.2/btas/storage_traits.h Examining data/bagel-1.2.2/btas/tarray.h Examining data/bagel-1.2.2/btas/tensor.h Examining data/bagel-1.2.2/btas/tensor_func.h Examining data/bagel-1.2.2/btas/tensor_traits.h Examining data/bagel-1.2.2/btas/tensorview.h Examining data/bagel-1.2.2/btas/tensorview_iterator.h Examining data/bagel-1.2.2/btas/type_traits.h Examining data/bagel-1.2.2/btas/types.h Examining data/bagel-1.2.2/btas/util/dot.h Examining data/bagel-1.2.2/btas/util/functional.h Examining data/bagel-1.2.2/btas/util/optional_ptr.h Examining data/bagel-1.2.2/btas/util/resize.h Examining data/bagel-1.2.2/btas/util/sequence_adaptor.h Examining data/bagel-1.2.2/btas/varray/allocators.h Examining data/bagel-1.2.2/btas/varray/varray.h Examining data/bagel-1.2.2/src/asd/asd.h Examining data/bagel-1.2.2/src/asd/asd_base.cc Examining data/bagel-1.2.2/src/asd/asd_base.h Examining data/bagel-1.2.2/src/asd/asd_cas.cc Examining data/bagel-1.2.2/src/asd/asd_cas.h Examining data/bagel-1.2.2/src/asd/asd_compute.hpp Examining data/bagel-1.2.2/src/asd/asd_compute_diagonal.hpp Examining data/bagel-1.2.2/src/asd/asd_compute_rdm.hpp Examining data/bagel-1.2.2/src/asd/asd_diagonalize.cc Examining data/bagel-1.2.2/src/asd/asd_init.hpp Examining data/bagel-1.2.2/src/asd/asd_modelize.cc Examining data/bagel-1.2.2/src/asd/asd_ras.cc Examining data/bagel-1.2.2/src/asd/asd_ras.h Examining data/bagel-1.2.2/src/asd/asd_rdm.cc Examining data/bagel-1.2.2/src/asd/asd_spin.cc Examining data/bagel-1.2.2/src/asd/asd_spin.h Examining data/bagel-1.2.2/src/asd/asd_spin_coupling.hpp Examining data/bagel-1.2.2/src/asd/construct_asd.cc Examining data/bagel-1.2.2/src/asd/construct_asd.h Examining data/bagel-1.2.2/src/asd/coupling.cc Examining data/bagel-1.2.2/src/asd/coupling.h Examining data/bagel-1.2.2/src/asd/dimer/dimer.cc Examining data/bagel-1.2.2/src/asd/dimer/dimer.h Examining data/bagel-1.2.2/src/asd/dimer/dimer_cispace.h Examining data/bagel-1.2.2/src/asd/dimer/dimer_jop.cc Examining data/bagel-1.2.2/src/asd/dimer/dimer_jop.h Examining data/bagel-1.2.2/src/asd/dimer/dimer_linked.cc Examining data/bagel-1.2.2/src/asd/dimer/dimer_scf.cc Examining data/bagel-1.2.2/src/asd/dimersubspace.h Examining data/bagel-1.2.2/src/asd/dmrg/asd_dmrg.cc Examining data/bagel-1.2.2/src/asd/dmrg/asd_dmrg.h Examining data/bagel-1.2.2/src/asd/dmrg/asd_dmrg_compute.cc Examining data/bagel-1.2.2/src/asd/dmrg/block_key.h Examining data/bagel-1.2.2/src/asd/dmrg/block_operators.h Examining data/bagel-1.2.2/src/asd/dmrg/block_ops_1.cc Examining data/bagel-1.2.2/src/asd/dmrg/block_ops_2.cc Examining data/bagel-1.2.2/src/asd/dmrg/dmrg_block.cc Examining data/bagel-1.2.2/src/asd/dmrg/dmrg_block.h Examining data/bagel-1.2.2/src/asd/dmrg/form_sigma.cc Examining data/bagel-1.2.2/src/asd/dmrg/form_sigma.h Examining data/bagel-1.2.2/src/asd/dmrg/form_sigma_ci.cc Examining data/bagel-1.2.2/src/asd/dmrg/gamma_forest_asd.h Examining data/bagel-1.2.2/src/asd/dmrg/gamma_forest_prod_asd.cc Examining data/bagel-1.2.2/src/asd/dmrg/gamma_forest_prod_asd.h Examining data/bagel-1.2.2/src/asd/dmrg/kronecker.cc Examining data/bagel-1.2.2/src/asd/dmrg/kronecker.h Examining data/bagel-1.2.2/src/asd/dmrg/phi_ijk_lists.cc Examining data/bagel-1.2.2/src/asd/dmrg/phi_ijk_lists.h Examining data/bagel-1.2.2/src/asd/dmrg/phi_k_lists.cc Examining data/bagel-1.2.2/src/asd/dmrg/phi_k_lists.h Examining data/bagel-1.2.2/src/asd/dmrg/product_citask.h Examining data/bagel-1.2.2/src/asd/dmrg/product_civec.cc Examining data/bagel-1.2.2/src/asd/dmrg/product_civec.h Examining data/bagel-1.2.2/src/asd/dmrg/product_denom.cc Examining data/bagel-1.2.2/src/asd/dmrg/product_guess.cc Examining data/bagel-1.2.2/src/asd/dmrg/product_modelci.cc Examining data/bagel-1.2.2/src/asd/dmrg/product_modelci.h Examining data/bagel-1.2.2/src/asd/dmrg/product_rasci.cc Examining data/bagel-1.2.2/src/asd/dmrg/product_rasci.h Examining data/bagel-1.2.2/src/asd/dmrg/rasd.cc Examining data/bagel-1.2.2/src/asd/dmrg/rasd.h Examining data/bagel-1.2.2/src/asd/gamma_forest.cc Examining data/bagel-1.2.2/src/asd/gamma_forest.h Examining data/bagel-1.2.2/src/asd/gamma_sq.h Examining data/bagel-1.2.2/src/asd/gamma_task.cc Examining data/bagel-1.2.2/src/asd/gamma_task.h Examining data/bagel-1.2.2/src/asd/gamma_tensor.cc Examining data/bagel-1.2.2/src/asd/gamma_tensor.h Examining data/bagel-1.2.2/src/asd/gamma_tree.cc Examining data/bagel-1.2.2/src/asd/gamma_tree.h Examining data/bagel-1.2.2/src/asd/multisite/multisite.cc Examining data/bagel-1.2.2/src/asd/multisite/multisite.h Examining data/bagel-1.2.2/src/asd/orbital/asd_bfgs.cc Examining data/bagel-1.2.2/src/asd/orbital/asd_bfgs.h Examining data/bagel-1.2.2/src/asd/orbital/asd_bfgs_denom.cc Examining data/bagel-1.2.2/src/asd/orbital/asd_bfgs_grad.cc Examining data/bagel-1.2.2/src/asd/orbital/asd_orbopt.cc Examining data/bagel-1.2.2/src/asd/orbital/asd_orbopt.h Examining data/bagel-1.2.2/src/asd/orbital/asd_rotfile.h Examining data/bagel-1.2.2/src/asd/orbital/construct_asd_orbopt.cc Examining data/bagel-1.2.2/src/asd/orbital/construct_asd_orbopt.h Examining data/bagel-1.2.2/src/asd/state_tensor.h Examining data/bagel-1.2.2/src/bagel.h Examining data/bagel-1.2.2/src/ci/ciutil/bitutil.h Examining data/bagel-1.2.2/src/ci/ciutil/ciblock.h Examining data/bagel-1.2.2/src/ci/ciutil/cistring.cc Examining data/bagel-1.2.2/src/ci/ciutil/cistring.h Examining data/bagel-1.2.2/src/ci/ciutil/cistringmap.h Examining data/bagel-1.2.2/src/ci/ciutil/cistringset.cc Examining data/bagel-1.2.2/src/ci/ciutil/cistringset.h Examining data/bagel-1.2.2/src/ci/ciutil/cistringspace.h Examining data/bagel-1.2.2/src/ci/ciutil/citraits.h Examining data/bagel-1.2.2/src/ci/ciutil/determinants_base.cc Examining data/bagel-1.2.2/src/ci/ciutil/determinants_base.h Examining data/bagel-1.2.2/src/ci/fci/citask.h Examining data/bagel-1.2.2/src/ci/fci/civec.cc Examining data/bagel-1.2.2/src/ci/fci/civec.h Examining data/bagel-1.2.2/src/ci/fci/determinants.cc Examining data/bagel-1.2.2/src/ci/fci/determinants.h Examining data/bagel-1.2.2/src/ci/fci/dist_form_sigma.cc Examining data/bagel-1.2.2/src/ci/fci/dist_form_sigma.h Examining data/bagel-1.2.2/src/ci/fci/distcivec.cc Examining data/bagel-1.2.2/src/ci/fci/distcivec.h Examining data/bagel-1.2.2/src/ci/fci/distfci.cc Examining data/bagel-1.2.2/src/ci/fci/distfci.h Examining data/bagel-1.2.2/src/ci/fci/distfci_ab.h Examining data/bagel-1.2.2/src/ci/fci/distfci_bb.h Examining data/bagel-1.2.2/src/ci/fci/distfci_rdm.cc Examining data/bagel-1.2.2/src/ci/fci/dvec.cc Examining data/bagel-1.2.2/src/ci/fci/dvec.h Examining data/bagel-1.2.2/src/ci/fci/dvector_base.h Examining data/bagel-1.2.2/src/ci/fci/fci.cc Examining data/bagel-1.2.2/src/ci/fci/fci.h Examining data/bagel-1.2.2/src/ci/fci/fci_base.cc Examining data/bagel-1.2.2/src/ci/fci/fci_base.h Examining data/bagel-1.2.2/src/ci/fci/fci_io.cc Examining data/bagel-1.2.2/src/ci/fci/fci_rdm.cc Examining data/bagel-1.2.2/src/ci/fci/fci_rdm_alpha.cc Examining data/bagel-1.2.2/src/ci/fci/fci_rdmderiv.cc Examining data/bagel-1.2.2/src/ci/fci/harrison.h Examining data/bagel-1.2.2/src/ci/fci/harrison_compute.cc Examining data/bagel-1.2.2/src/ci/fci/harrison_denom.cc Examining data/bagel-1.2.2/src/ci/fci/hzdenomtask.h Examining data/bagel-1.2.2/src/ci/fci/hztasks.h Examining data/bagel-1.2.2/src/ci/fci/knowles.h Examining data/bagel-1.2.2/src/ci/fci/knowles_compute.cc Examining data/bagel-1.2.2/src/ci/fci/knowles_denom.cc Examining data/bagel-1.2.2/src/ci/fci/modelci.cc Examining data/bagel-1.2.2/src/ci/fci/modelci.h Examining data/bagel-1.2.2/src/ci/fci/mofile.cc Examining data/bagel-1.2.2/src/ci/fci/mofile.h Examining data/bagel-1.2.2/src/ci/fci/prop1etask.h Examining data/bagel-1.2.2/src/ci/fci/space.cc Examining data/bagel-1.2.2/src/ci/fci/space.h Examining data/bagel-1.2.2/src/ci/fci/space_base.cc Examining data/bagel-1.2.2/src/ci/fci/space_base.h Examining data/bagel-1.2.2/src/ci/ras/apply_block.h Examining data/bagel-1.2.2/src/ci/ras/apply_operator.cc Examining data/bagel-1.2.2/src/ci/ras/apply_operator.h Examining data/bagel-1.2.2/src/ci/ras/civec_spinop.cc Examining data/bagel-1.2.2/src/ci/ras/civec_spinop.h Examining data/bagel-1.2.2/src/ci/ras/civector.cc Examining data/bagel-1.2.2/src/ci/ras/civector.h Examining data/bagel-1.2.2/src/ci/ras/civector_base.h Examining data/bagel-1.2.2/src/ci/ras/civector_impl.cc Examining data/bagel-1.2.2/src/ci/ras/civector_impl.h Examining data/bagel-1.2.2/src/ci/ras/denomtask.h Examining data/bagel-1.2.2/src/ci/ras/determinants.cc Examining data/bagel-1.2.2/src/ci/ras/determinants.h Examining data/bagel-1.2.2/src/ci/ras/form_sigma.cc Examining data/bagel-1.2.2/src/ci/ras/form_sigma.h Examining data/bagel-1.2.2/src/ci/ras/ras_space.h Examining data/bagel-1.2.2/src/ci/ras/rasci.cc Examining data/bagel-1.2.2/src/ci/ras/rasci.h Examining data/bagel-1.2.2/src/ci/ras/rasci_denom.cc Examining data/bagel-1.2.2/src/ci/ras/sparse_ij.cc Examining data/bagel-1.2.2/src/ci/ras/sparse_ij.h Examining data/bagel-1.2.2/src/ci/zfci/fci_london.cc Examining data/bagel-1.2.2/src/ci/zfci/fci_london.h Examining data/bagel-1.2.2/src/ci/zfci/jop_london.cc Examining data/bagel-1.2.2/src/ci/zfci/jop_london.h Examining data/bagel-1.2.2/src/ci/zfci/reldvec.cc Examining data/bagel-1.2.2/src/ci/zfci/reldvec.h Examining data/bagel-1.2.2/src/ci/zfci/relfci.cc Examining data/bagel-1.2.2/src/ci/zfci/relfci.h Examining data/bagel-1.2.2/src/ci/zfci/reljop.cc Examining data/bagel-1.2.2/src/ci/zfci/reljop.h Examining data/bagel-1.2.2/src/ci/zfci/relspace.cc Examining data/bagel-1.2.2/src/ci/zfci/relspace.h Examining data/bagel-1.2.2/src/ci/zfci/zharrison.cc Examining data/bagel-1.2.2/src/ci/zfci/zharrison.h Examining data/bagel-1.2.2/src/ci/zfci/zharrison_compute.cc Examining data/bagel-1.2.2/src/ci/zfci/zharrison_denom.cc Examining data/bagel-1.2.2/src/ci/zfci/zharrison_io.cc Examining data/bagel-1.2.2/src/ci/zfci/zharrison_parallel.cc Examining data/bagel-1.2.2/src/ci/zfci/zharrison_rdm.cc Examining data/bagel-1.2.2/src/ci/zfci/zmofile.cc Examining data/bagel-1.2.2/src/ci/zfci/zmofile.h Examining data/bagel-1.2.2/src/df/breit2index.cc Examining data/bagel-1.2.2/src/df/breit2index.h Examining data/bagel-1.2.2/src/df/complexdf.cc Examining data/bagel-1.2.2/src/df/complexdf.h Examining data/bagel-1.2.2/src/df/complexdf_base.cc Examining data/bagel-1.2.2/src/df/complexdf_base.h Examining data/bagel-1.2.2/src/df/complexdfinttask.h Examining data/bagel-1.2.2/src/df/df.cc Examining data/bagel-1.2.2/src/df/df.h Examining data/bagel-1.2.2/src/df/dfblock.cc Examining data/bagel-1.2.2/src/df/dfblock.h Examining data/bagel-1.2.2/src/df/dfdistt.cc Examining data/bagel-1.2.2/src/df/dfdistt.h Examining data/bagel-1.2.2/src/df/dfinttask.h Examining data/bagel-1.2.2/src/df/dfinttask_old.h Examining data/bagel-1.2.2/src/df/paralleldf.cc Examining data/bagel-1.2.2/src/df/paralleldf.h Examining data/bagel-1.2.2/src/df/relcdmatrix.cc Examining data/bagel-1.2.2/src/df/relcdmatrix.h Examining data/bagel-1.2.2/src/df/reldf.cc Examining data/bagel-1.2.2/src/df/reldf.h Examining data/bagel-1.2.2/src/df/reldfbase.h Examining data/bagel-1.2.2/src/df/reldffull.cc Examining data/bagel-1.2.2/src/df/reldffull.h Examining data/bagel-1.2.2/src/df/reldffullt.cc Examining data/bagel-1.2.2/src/df/reldffullt.h Examining data/bagel-1.2.2/src/df/reldfhalf.cc Examining data/bagel-1.2.2/src/df/reldfhalf.h Examining data/bagel-1.2.2/src/global.h Examining data/bagel-1.2.2/src/grad/cpcasscf.cc Examining data/bagel-1.2.2/src/grad/cpcasscf.h Examining data/bagel-1.2.2/src/grad/cphf.cc Examining data/bagel-1.2.2/src/grad/cphf.h Examining data/bagel-1.2.2/src/grad/dkhgrad.cc Examining data/bagel-1.2.2/src/grad/dkhgrad.h Examining data/bagel-1.2.2/src/grad/finite.cc Examining data/bagel-1.2.2/src/grad/finite.h Examining data/bagel-1.2.2/src/grad/force.cc Examining data/bagel-1.2.2/src/grad/force.h Examining data/bagel-1.2.2/src/grad/gradeval.cc Examining data/bagel-1.2.2/src/grad/gradeval.h Examining data/bagel-1.2.2/src/grad/gradeval_base.cc Examining data/bagel-1.2.2/src/grad/gradeval_base.h Examining data/bagel-1.2.2/src/grad/gradinfo.h Examining data/bagel-1.2.2/src/grad/gradtask.cc Examining data/bagel-1.2.2/src/grad/gradtask.hpp Examining data/bagel-1.2.2/src/grad/hess.cc Examining data/bagel-1.2.2/src/grad/hess.h Examining data/bagel-1.2.2/src/grad/nacmtype.h Examining data/bagel-1.2.2/src/integral/_carsph_00.cc Examining data/bagel-1.2.2/src/integral/_carsph_10.cc Examining data/bagel-1.2.2/src/integral/_carsph_11.cc Examining data/bagel-1.2.2/src/integral/_carsph_20.cc Examining data/bagel-1.2.2/src/integral/_carsph_21.cc Examining data/bagel-1.2.2/src/integral/_carsph_22.cc Examining data/bagel-1.2.2/src/integral/_carsph_30.cc Examining data/bagel-1.2.2/src/integral/_carsph_31.cc Examining data/bagel-1.2.2/src/integral/_carsph_32.cc Examining data/bagel-1.2.2/src/integral/_carsph_33.cc Examining data/bagel-1.2.2/src/integral/_carsph_40.cc Examining data/bagel-1.2.2/src/integral/_carsph_41.cc Examining data/bagel-1.2.2/src/integral/_carsph_42.cc Examining data/bagel-1.2.2/src/integral/_carsph_43.cc Examining data/bagel-1.2.2/src/integral/_carsph_44.cc Examining data/bagel-1.2.2/src/integral/_carsph_50.cc Examining data/bagel-1.2.2/src/integral/_carsph_51.cc Examining data/bagel-1.2.2/src/integral/_carsph_52.cc Examining data/bagel-1.2.2/src/integral/_carsph_53.cc Examining data/bagel-1.2.2/src/integral/_carsph_54.cc Examining data/bagel-1.2.2/src/integral/_carsph_55.cc Examining data/bagel-1.2.2/src/integral/_carsph_60.cc Examining data/bagel-1.2.2/src/integral/_carsph_61.cc Examining data/bagel-1.2.2/src/integral/_carsph_62.cc Examining data/bagel-1.2.2/src/integral/_carsph_63.cc Examining data/bagel-1.2.2/src/integral/_carsph_64.cc Examining data/bagel-1.2.2/src/integral/_carsph_65.cc Examining data/bagel-1.2.2/src/integral/_carsph_66.cc Examining data/bagel-1.2.2/src/integral/_carsph_70.cc Examining data/bagel-1.2.2/src/integral/_carsph_71.cc Examining data/bagel-1.2.2/src/integral/_carsph_72.cc Examining data/bagel-1.2.2/src/integral/_carsph_73.cc Examining data/bagel-1.2.2/src/integral/_carsph_74.cc Examining data/bagel-1.2.2/src/integral/_carsph_75.cc Examining data/bagel-1.2.2/src/integral/_carsph_76.cc Examining data/bagel-1.2.2/src/integral/_carsph_77.cc Examining data/bagel-1.2.2/src/integral/_hrr_20_11.cc Examining data/bagel-1.2.2/src/integral/_hrr_30_21.cc Examining data/bagel-1.2.2/src/integral/_hrr_40_22.cc Examining data/bagel-1.2.2/src/integral/_hrr_40_31.cc Examining data/bagel-1.2.2/src/integral/_hrr_50_32.cc Examining data/bagel-1.2.2/src/integral/_hrr_50_41.cc Examining data/bagel-1.2.2/src/integral/_hrr_60_33.cc Examining data/bagel-1.2.2/src/integral/_hrr_60_42.cc Examining data/bagel-1.2.2/src/integral/_hrr_60_51.cc Examining data/bagel-1.2.2/src/integral/_hrr_70_43.cc Examining data/bagel-1.2.2/src/integral/_hrr_70_52.cc Examining data/bagel-1.2.2/src/integral/_hrr_70_61.cc Examining data/bagel-1.2.2/src/integral/_hrr_80_44.cc Examining data/bagel-1.2.2/src/integral/_hrr_80_53.cc Examining data/bagel-1.2.2/src/integral/_hrr_80_62.cc Examining data/bagel-1.2.2/src/integral/_hrr_80_71.cc Examining data/bagel-1.2.2/src/integral/_hrr_90_54.cc Examining data/bagel-1.2.2/src/integral/_hrr_90_63.cc Examining data/bagel-1.2.2/src/integral/_hrr_90_72.cc Examining data/bagel-1.2.2/src/integral/_hrr_a0_55.cc Examining data/bagel-1.2.2/src/integral/_hrr_a0_64.cc Examining data/bagel-1.2.2/src/integral/_hrr_a0_73.cc Examining data/bagel-1.2.2/src/integral/_hrr_b0_65.cc Examining data/bagel-1.2.2/src/integral/_hrr_b0_74.cc Examining data/bagel-1.2.2/src/integral/_hrr_c0_66.cc Examining data/bagel-1.2.2/src/integral/_hrr_c0_75.cc Examining data/bagel-1.2.2/src/integral/_hrr_d0_76.cc Examining data/bagel-1.2.2/src/integral/_hrr_e0_77.cc Examining data/bagel-1.2.2/src/integral/carsph_gen/carsph_gen.cc Examining data/bagel-1.2.2/src/integral/carsph_gen/mpreal.h Examining data/bagel-1.2.2/src/integral/carsphlist.cc Examining data/bagel-1.2.2/src/integral/carsphlist.h Examining data/bagel-1.2.2/src/integral/compos/complexangmombatch.cc Examining data/bagel-1.2.2/src/integral/compos/complexangmombatch.h Examining data/bagel-1.2.2/src/integral/compos/complexkineticbatch.cc Examining data/bagel-1.2.2/src/integral/compos/complexkineticbatch.h Examining data/bagel-1.2.2/src/integral/compos/complexmomentumbatch.cc Examining data/bagel-1.2.2/src/integral/compos/complexmomentumbatch.h Examining data/bagel-1.2.2/src/integral/compos/complexoverlapbatch.cc Examining data/bagel-1.2.2/src/integral/compos/complexoverlapbatch.h Examining data/bagel-1.2.2/src/integral/compos/covrr.cc Examining data/bagel-1.2.2/src/integral/compos/point_complexmomentumbatch.cc Examining data/bagel-1.2.2/src/integral/compos/point_complexmomentumbatch.h Examining data/bagel-1.2.2/src/integral/compos/point_complexoverlapbatch.cc Examining data/bagel-1.2.2/src/integral/compos/point_complexoverlapbatch.h Examining data/bagel-1.2.2/src/integral/comprys/_complex_eriroot_1.cc Examining data/bagel-1.2.2/src/integral/comprys/_complex_eriroot_10.cc Examining data/bagel-1.2.2/src/integral/comprys/_complex_eriroot_11.cc Examining data/bagel-1.2.2/src/integral/comprys/_complex_eriroot_12.cc Examining data/bagel-1.2.2/src/integral/comprys/_complex_eriroot_13.cc Examining data/bagel-1.2.2/src/integral/comprys/_complex_eriroot_2.cc Examining data/bagel-1.2.2/src/integral/comprys/_complex_eriroot_3.cc Examining data/bagel-1.2.2/src/integral/comprys/_complex_eriroot_4.cc Examining data/bagel-1.2.2/src/integral/comprys/_complex_eriroot_5.cc Examining data/bagel-1.2.2/src/integral/comprys/_complex_eriroot_6.cc Examining data/bagel-1.2.2/src/integral/comprys/_complex_eriroot_7.cc Examining data/bagel-1.2.2/src/integral/comprys/_complex_eriroot_8.cc Examining data/bagel-1.2.2/src/integral/comprys/_complex_eriroot_9.cc Examining data/bagel-1.2.2/src/integral/comprys/ccompute.cc Examining data/bagel-1.2.2/src/integral/comprys/comperirootlist.h Examining data/bagel-1.2.2/src/integral/comprys/complexeribatch.cc Examining data/bagel-1.2.2/src/integral/comprys/complexeribatch.h Examining data/bagel-1.2.2/src/integral/comprys/complexmixederibatch.cc Examining data/bagel-1.2.2/src/integral/comprys/complexmixederibatch.h Examining data/bagel-1.2.2/src/integral/comprys/complexnaibatch.cc Examining data/bagel-1.2.2/src/integral/comprys/complexnaibatch.h Examining data/bagel-1.2.2/src/integral/comprys/complexsmalleribatch.cc Examining data/bagel-1.2.2/src/integral/comprys/complexsmalleribatch.h Examining data/bagel-1.2.2/src/integral/comprys/cvrr.cc Examining data/bagel-1.2.2/src/integral/comprys/interpolate/complex_main.cc Examining data/bagel-1.2.2/src/integral/comprys/interpolate/complex_rys_gmp.cc Examining data/bagel-1.2.2/src/integral/comprys/interpolate/gmp_macros.h Examining data/bagel-1.2.2/src/integral/comprys/interpolate/mpreal.h Examining data/bagel-1.2.2/src/integral/csort.cc Examining data/bagel-1.2.2/src/integral/csort_sph.cc Examining data/bagel-1.2.2/src/integral/ecp/_sphusp_0.cc Examining data/bagel-1.2.2/src/integral/ecp/_sphusp_1.cc Examining data/bagel-1.2.2/src/integral/ecp/_sphusp_10.cc Examining data/bagel-1.2.2/src/integral/ecp/_sphusp_2.cc Examining data/bagel-1.2.2/src/integral/ecp/_sphusp_3.cc Examining data/bagel-1.2.2/src/integral/ecp/_sphusp_4.cc Examining data/bagel-1.2.2/src/integral/ecp/_sphusp_5.cc Examining data/bagel-1.2.2/src/integral/ecp/_sphusp_6.cc Examining data/bagel-1.2.2/src/integral/ecp/_sphusp_7.cc Examining data/bagel-1.2.2/src/integral/ecp/_sphusp_8.cc Examining data/bagel-1.2.2/src/integral/ecp/_sphusp_9.cc Examining data/bagel-1.2.2/src/integral/ecp/angularbatch.cc Examining data/bagel-1.2.2/src/integral/ecp/angularbatch.h Examining data/bagel-1.2.2/src/integral/ecp/carsph/carsph_tab.cc Examining data/bagel-1.2.2/src/integral/ecp/ecpbatch.cc Examining data/bagel-1.2.2/src/integral/ecp/ecpbatch.h Examining data/bagel-1.2.2/src/integral/ecp/radial.cc Examining data/bagel-1.2.2/src/integral/ecp/radial.h Examining data/bagel-1.2.2/src/integral/ecp/soangularbatch.cc Examining data/bagel-1.2.2/src/integral/ecp/soangularbatch.h Examining data/bagel-1.2.2/src/integral/ecp/soecpbatch.cc Examining data/bagel-1.2.2/src/integral/ecp/soecpbatch.h Examining data/bagel-1.2.2/src/integral/ecp/sphusp_gen/sphusp_gen.cc Examining data/bagel-1.2.2/src/integral/ecp/sphusplist.h Examining data/bagel-1.2.2/src/integral/ecp/testcode/ang_proj/main.cc Examining data/bagel-1.2.2/src/integral/ecp/testcode/ang_proj/mpreal.h Examining data/bagel-1.2.2/src/integral/ecp/testcode/ang_proj/proj.h Examining data/bagel-1.2.2/src/integral/ecp/testcode/ang_proj/radial.h Examining data/bagel-1.2.2/src/integral/ecp/testcode/ang_proj/test.h Examining data/bagel-1.2.2/src/integral/ecp/testcode/angular/cartgauss.h Examining data/bagel-1.2.2/src/integral/ecp/testcode/angular/main.cc Examining data/bagel-1.2.2/src/integral/ecp/testcode/fmlm/main.cc Examining data/bagel-1.2.2/src/integral/ecp/testcode/sointegral/cartgauss.h Examining data/bagel-1.2.2/src/integral/ecp/testcode/sointegral/main.cc Examining data/bagel-1.2.2/src/integral/ecp/testcode/sointegral/radialquad.h Examining data/bagel-1.2.2/src/integral/ecp/testcode/sointegral/so.h Examining data/bagel-1.2.2/src/integral/ecp/wigner3j.h Examining data/bagel-1.2.2/src/integral/ecp/wigner3j_gen/mpreal.h Examining data/bagel-1.2.2/src/integral/ecp/wigner3j_gen/wigner3j_gen.cc Examining data/bagel-1.2.2/src/integral/hrr_gen/angular_index.cc Examining data/bagel-1.2.2/src/integral/hrr_gen/angular_index.h Examining data/bagel-1.2.2/src/integral/hrr_gen/hrr_template.cc Examining data/bagel-1.2.2/src/integral/hrr_gen/main.cc Examining data/bagel-1.2.2/src/integral/hrrlist.cc Examining data/bagel-1.2.2/src/integral/hrrlist.h Examining data/bagel-1.2.2/src/integral/integral.h Examining data/bagel-1.2.2/src/integral/libint/glibint.cc Examining data/bagel-1.2.2/src/integral/libint/glibint.h Examining data/bagel-1.2.2/src/integral/libint/libint.cc Examining data/bagel-1.2.2/src/integral/libint/libint.h Examining data/bagel-1.2.2/src/integral/os/angmombatch.cc Examining data/bagel-1.2.2/src/integral/os/angmombatch.h Examining data/bagel-1.2.2/src/integral/os/gkcompute.cc Examining data/bagel-1.2.2/src/integral/os/gkineticbatch.h Examining data/bagel-1.2.2/src/integral/os/gmcompute.cc Examining data/bagel-1.2.2/src/integral/os/gmomentbatch.h Examining data/bagel-1.2.2/src/integral/os/gocompute.cc Examining data/bagel-1.2.2/src/integral/os/goverlapbatch.h Examining data/bagel-1.2.2/src/integral/os/kineticbatch.cc Examining data/bagel-1.2.2/src/integral/os/kineticbatch.h Examining data/bagel-1.2.2/src/integral/os/mmbatch.cc Examining data/bagel-1.2.2/src/integral/os/mmbatch.h Examining data/bagel-1.2.2/src/integral/os/momentumbatch.cc Examining data/bagel-1.2.2/src/integral/os/momentumbatch.h Examining data/bagel-1.2.2/src/integral/os/multipolebatch.cc Examining data/bagel-1.2.2/src/integral/os/multipolebatch.h Examining data/bagel-1.2.2/src/integral/os/multipolebatch_base.cc Examining data/bagel-1.2.2/src/integral/os/multipolebatch_base.h Examining data/bagel-1.2.2/src/integral/os/osintegral.cc Examining data/bagel-1.2.2/src/integral/os/osintegral.h Examining data/bagel-1.2.2/src/integral/os/overlapbatch.cc Examining data/bagel-1.2.2/src/integral/os/overlapbatch.h Examining data/bagel-1.2.2/src/integral/os/ovrr.cc Examining data/bagel-1.2.2/src/integral/os/point_overlapbatch.cc Examining data/bagel-1.2.2/src/integral/os/point_overlapbatch.h Examining data/bagel-1.2.2/src/integral/os/sphmmbatch.cc Examining data/bagel-1.2.2/src/integral/os/sphmmbatch.h Examining data/bagel-1.2.2/src/integral/rys/_breitroot_1.cc Examining data/bagel-1.2.2/src/integral/rys/_breitroot_10.cc Examining data/bagel-1.2.2/src/integral/rys/_breitroot_11.cc Examining data/bagel-1.2.2/src/integral/rys/_breitroot_12.cc Examining data/bagel-1.2.2/src/integral/rys/_breitroot_13.cc Examining data/bagel-1.2.2/src/integral/rys/_breitroot_2.cc Examining data/bagel-1.2.2/src/integral/rys/_breitroot_3.cc Examining data/bagel-1.2.2/src/integral/rys/_breitroot_4.cc Examining data/bagel-1.2.2/src/integral/rys/_breitroot_5.cc Examining data/bagel-1.2.2/src/integral/rys/_breitroot_6.cc Examining data/bagel-1.2.2/src/integral/rys/_breitroot_7.cc Examining data/bagel-1.2.2/src/integral/rys/_breitroot_8.cc Examining data/bagel-1.2.2/src/integral/rys/_breitroot_9.cc Examining data/bagel-1.2.2/src/integral/rys/_bvrr_drv.h Examining data/bagel-1.2.2/src/integral/rys/_eriroot_1.cc Examining data/bagel-1.2.2/src/integral/rys/_eriroot_10.cc Examining data/bagel-1.2.2/src/integral/rys/_eriroot_11.cc Examining data/bagel-1.2.2/src/integral/rys/_eriroot_12.cc Examining data/bagel-1.2.2/src/integral/rys/_eriroot_13.cc Examining data/bagel-1.2.2/src/integral/rys/_eriroot_14.cc Examining data/bagel-1.2.2/src/integral/rys/_eriroot_15.cc Examining data/bagel-1.2.2/src/integral/rys/_eriroot_16.cc Examining data/bagel-1.2.2/src/integral/rys/_eriroot_17.cc Examining data/bagel-1.2.2/src/integral/rys/_eriroot_18.cc Examining data/bagel-1.2.2/src/integral/rys/_eriroot_19.cc Examining data/bagel-1.2.2/src/integral/rys/_eriroot_2.cc Examining data/bagel-1.2.2/src/integral/rys/_eriroot_20.cc Examining data/bagel-1.2.2/src/integral/rys/_eriroot_21.cc Examining data/bagel-1.2.2/src/integral/rys/_eriroot_22.cc Examining data/bagel-1.2.2/src/integral/rys/_eriroot_23.cc Examining data/bagel-1.2.2/src/integral/rys/_eriroot_24.cc Examining data/bagel-1.2.2/src/integral/rys/_eriroot_25.cc Examining data/bagel-1.2.2/src/integral/rys/_eriroot_26.cc Examining data/bagel-1.2.2/src/integral/rys/_eriroot_27.cc Examining data/bagel-1.2.2/src/integral/rys/_eriroot_28.cc Examining data/bagel-1.2.2/src/integral/rys/_eriroot_29.cc Examining data/bagel-1.2.2/src/integral/rys/_eriroot_3.cc Examining data/bagel-1.2.2/src/integral/rys/_eriroot_30.cc Examining data/bagel-1.2.2/src/integral/rys/_eriroot_31.cc Examining data/bagel-1.2.2/src/integral/rys/_eriroot_32.cc Examining data/bagel-1.2.2/src/integral/rys/_eriroot_33.cc Examining data/bagel-1.2.2/src/integral/rys/_eriroot_34.cc Examining data/bagel-1.2.2/src/integral/rys/_eriroot_35.cc Examining data/bagel-1.2.2/src/integral/rys/_eriroot_36.cc Examining data/bagel-1.2.2/src/integral/rys/_eriroot_37.cc Examining data/bagel-1.2.2/src/integral/rys/_eriroot_38.cc Examining data/bagel-1.2.2/src/integral/rys/_eriroot_39.cc Examining data/bagel-1.2.2/src/integral/rys/_eriroot_4.cc Examining data/bagel-1.2.2/src/integral/rys/_eriroot_40.cc Examining data/bagel-1.2.2/src/integral/rys/_eriroot_41.cc Examining data/bagel-1.2.2/src/integral/rys/_eriroot_42.cc Examining data/bagel-1.2.2/src/integral/rys/_eriroot_43.cc Examining data/bagel-1.2.2/src/integral/rys/_eriroot_44.cc Examining data/bagel-1.2.2/src/integral/rys/_eriroot_45.cc Examining data/bagel-1.2.2/src/integral/rys/_eriroot_46.cc Examining data/bagel-1.2.2/src/integral/rys/_eriroot_47.cc Examining data/bagel-1.2.2/src/integral/rys/_eriroot_48.cc Examining data/bagel-1.2.2/src/integral/rys/_eriroot_49.cc Examining data/bagel-1.2.2/src/integral/rys/_eriroot_5.cc Examining data/bagel-1.2.2/src/integral/rys/_eriroot_50.cc Examining data/bagel-1.2.2/src/integral/rys/_eriroot_6.cc Examining data/bagel-1.2.2/src/integral/rys/_eriroot_7.cc Examining data/bagel-1.2.2/src/integral/rys/_eriroot_8.cc Examining data/bagel-1.2.2/src/integral/rys/_eriroot_9.cc Examining data/bagel-1.2.2/src/integral/rys/_gvrr_drv.h Examining data/bagel-1.2.2/src/integral/rys/_r2root_1.cc Examining data/bagel-1.2.2/src/integral/rys/_r2root_10.cc Examining data/bagel-1.2.2/src/integral/rys/_r2root_11.cc Examining data/bagel-1.2.2/src/integral/rys/_r2root_12.cc Examining data/bagel-1.2.2/src/integral/rys/_r2root_13.cc Examining data/bagel-1.2.2/src/integral/rys/_r2root_2.cc Examining data/bagel-1.2.2/src/integral/rys/_r2root_3.cc Examining data/bagel-1.2.2/src/integral/rys/_r2root_4.cc Examining data/bagel-1.2.2/src/integral/rys/_r2root_5.cc Examining data/bagel-1.2.2/src/integral/rys/_r2root_6.cc Examining data/bagel-1.2.2/src/integral/rys/_r2root_7.cc Examining data/bagel-1.2.2/src/integral/rys/_r2root_8.cc Examining data/bagel-1.2.2/src/integral/rys/_r2root_9.cc Examining data/bagel-1.2.2/src/integral/rys/_s2vrr_drv.h Examining data/bagel-1.2.2/src/integral/rys/_spin2root_1.cc Examining data/bagel-1.2.2/src/integral/rys/_spin2root_10.cc Examining data/bagel-1.2.2/src/integral/rys/_spin2root_11.cc Examining data/bagel-1.2.2/src/integral/rys/_spin2root_12.cc Examining data/bagel-1.2.2/src/integral/rys/_spin2root_13.cc Examining data/bagel-1.2.2/src/integral/rys/_spin2root_2.cc Examining data/bagel-1.2.2/src/integral/rys/_spin2root_3.cc Examining data/bagel-1.2.2/src/integral/rys/_spin2root_4.cc Examining data/bagel-1.2.2/src/integral/rys/_spin2root_5.cc Examining data/bagel-1.2.2/src/integral/rys/_spin2root_6.cc Examining data/bagel-1.2.2/src/integral/rys/_spin2root_7.cc Examining data/bagel-1.2.2/src/integral/rys/_spin2root_8.cc Examining data/bagel-1.2.2/src/integral/rys/_spin2root_9.cc Examining data/bagel-1.2.2/src/integral/rys/_svrr_drv.h Examining data/bagel-1.2.2/src/integral/rys/_vrr.h Examining data/bagel-1.2.2/src/integral/rys/_vrr_drv.h Examining data/bagel-1.2.2/src/integral/rys/bcompute.cc Examining data/bagel-1.2.2/src/integral/rys/breitbatch.cc Examining data/bagel-1.2.2/src/integral/rys/breitbatch.h Examining data/bagel-1.2.2/src/integral/rys/breitrootlist.h Examining data/bagel-1.2.2/src/integral/rys/bvrr.cc Examining data/bagel-1.2.2/src/integral/rys/bvrr_optim.cc Examining data/bagel-1.2.2/src/integral/rys/compute.cc Examining data/bagel-1.2.2/src/integral/rys/coulombbatch_base.cc Examining data/bagel-1.2.2/src/integral/rys/coulombbatch_base.h Examining data/bagel-1.2.2/src/integral/rys/coulombbatch_energy.cc Examining data/bagel-1.2.2/src/integral/rys/coulombbatch_energy.h Examining data/bagel-1.2.2/src/integral/rys/eribatch.cc Examining data/bagel-1.2.2/src/integral/rys/eribatch.h Examining data/bagel-1.2.2/src/integral/rys/eribatch_base.cc Examining data/bagel-1.2.2/src/integral/rys/eribatch_base.h Examining data/bagel-1.2.2/src/integral/rys/erirootlist.h Examining data/bagel-1.2.2/src/integral/rys/gcompute.cc Examining data/bagel-1.2.2/src/integral/rys/gnaibatch.cc Examining data/bagel-1.2.2/src/integral/rys/gnaibatch.h Examining data/bagel-1.2.2/src/integral/rys/gncompute.cc Examining data/bagel-1.2.2/src/integral/rys/gradbatch.cc Examining data/bagel-1.2.2/src/integral/rys/gradbatch.h Examining data/bagel-1.2.2/src/integral/rys/gsmalleribatch.cc Examining data/bagel-1.2.2/src/integral/rys/gsmalleribatch.h Examining data/bagel-1.2.2/src/integral/rys/gsmallnaibatch.cc Examining data/bagel-1.2.2/src/integral/rys/gsmallnaibatch.h Examining data/bagel-1.2.2/src/integral/rys/gvrr.cc Examining data/bagel-1.2.2/src/integral/rys/inline.h Examining data/bagel-1.2.2/src/integral/rys/int2d.h Examining data/bagel-1.2.2/src/integral/rys/interpolate/gmp_macros.h Examining data/bagel-1.2.2/src/integral/rys/interpolate/main.cc Examining data/bagel-1.2.2/src/integral/rys/interpolate/mpreal.h Examining data/bagel-1.2.2/src/integral/rys/interpolate/rys_gmp.cc Examining data/bagel-1.2.2/src/integral/rys/mixederibatch.cc Examining data/bagel-1.2.2/src/integral/rys/mixederibatch.h Examining data/bagel-1.2.2/src/integral/rys/naibatch.cc Examining data/bagel-1.2.2/src/integral/rys/naibatch.h Examining data/bagel-1.2.2/src/integral/rys/r0batch.cc Examining data/bagel-1.2.2/src/integral/rys/r0batch.h Examining data/bagel-1.2.2/src/integral/rys/r1batch.cc Examining data/bagel-1.2.2/src/integral/rys/r1batch.h Examining data/bagel-1.2.2/src/integral/rys/r2batch.cc Examining data/bagel-1.2.2/src/integral/rys/r2batch.h Examining data/bagel-1.2.2/src/integral/rys/r2rootlist.h Examining data/bagel-1.2.2/src/integral/rys/rnbatch.h Examining data/bagel-1.2.2/src/integral/rys/rysintegral.cc Examining data/bagel-1.2.2/src/integral/rys/rysintegral.h Examining data/bagel-1.2.2/src/integral/rys/s2vrr.cc Examining data/bagel-1.2.2/src/integral/rys/scaledata.h Examining data/bagel-1.2.2/src/integral/rys/scompute.cc Examining data/bagel-1.2.2/src/integral/rys/sinline.h Examining data/bagel-1.2.2/src/integral/rys/slaterbatch.cc Examining data/bagel-1.2.2/src/integral/rys/slaterbatch.h Examining data/bagel-1.2.2/src/integral/rys/smalleribatch.cc Examining data/bagel-1.2.2/src/integral/rys/smalleribatch.h Examining data/bagel-1.2.2/src/integral/rys/spin2rootlist.h Examining data/bagel-1.2.2/src/integral/rys/spindipolebatch.cc Examining data/bagel-1.2.2/src/integral/rys/spindipolebatch.h Examining data/bagel-1.2.2/src/integral/rys/svrr.cc Examining data/bagel-1.2.2/src/integral/rys/svrr_optim.cc Examining data/bagel-1.2.2/src/integral/rys/usvrr.cc Examining data/bagel-1.2.2/src/integral/rys/usvrr_optim.cc Examining data/bagel-1.2.2/src/integral/rys/vrr.cc Examining data/bagel-1.2.2/src/integral/rys/vrr_optim.cc Examining data/bagel-1.2.2/src/integral/smallints1e.h Examining data/bagel-1.2.2/src/integral/smallints1e_general.h Examining data/bagel-1.2.2/src/integral/smallints1e_london.h Examining data/bagel-1.2.2/src/integral/sort.cc Examining data/bagel-1.2.2/src/integral/sort_gen/cmain.cc Examining data/bagel-1.2.2/src/integral/sort_gen/main.cc Examining data/bagel-1.2.2/src/integral/sort_sph.cc Examining data/bagel-1.2.2/src/integral/sortlist.cc Examining data/bagel-1.2.2/src/integral/sortlist.h Examining data/bagel-1.2.2/src/main.cc Examining data/bagel-1.2.2/src/mat1e/angmom.cc Examining data/bagel-1.2.2/src/mat1e/angmom.h Examining data/bagel-1.2.2/src/mat1e/cap.cc Examining data/bagel-1.2.2/src/mat1e/cap.h Examining data/bagel-1.2.2/src/mat1e/dipolematrix.cc Examining data/bagel-1.2.2/src/mat1e/dipolematrix.h Examining data/bagel-1.2.2/src/mat1e/dkhcore.cc Examining data/bagel-1.2.2/src/mat1e/dkhcore.h Examining data/bagel-1.2.2/src/mat1e/fermicontact.cc Examining data/bagel-1.2.2/src/mat1e/fermicontact.h Examining data/bagel-1.2.2/src/mat1e/giao/angmom_london.cc Examining data/bagel-1.2.2/src/mat1e/giao/angmom_london.h Examining data/bagel-1.2.2/src/mat1e/giao/relhcore_london.cc Examining data/bagel-1.2.2/src/mat1e/giao/relhcore_london.h Examining data/bagel-1.2.2/src/mat1e/giao/reloverlap_london.cc Examining data/bagel-1.2.2/src/mat1e/giao/reloverlap_london.h Examining data/bagel-1.2.2/src/mat1e/giao/small1e_london.cc Examining data/bagel-1.2.2/src/mat1e/giao/small1e_london.h Examining data/bagel-1.2.2/src/mat1e/giao/zhcore.cc Examining data/bagel-1.2.2/src/mat1e/giao/zhcore.h Examining data/bagel-1.2.2/src/mat1e/giao/zkinetic.cc Examining data/bagel-1.2.2/src/mat1e/giao/zkinetic.h Examining data/bagel-1.2.2/src/mat1e/giao/zoverlap.cc Examining data/bagel-1.2.2/src/mat1e/giao/zoverlap.h Examining data/bagel-1.2.2/src/mat1e/hcore.cc Examining data/bagel-1.2.2/src/mat1e/hcore.h Examining data/bagel-1.2.2/src/mat1e/hso.h Examining data/bagel-1.2.2/src/mat1e/kinetic.cc Examining data/bagel-1.2.2/src/mat1e/kinetic.h Examining data/bagel-1.2.2/src/mat1e/matrix1e.cc Examining data/bagel-1.2.2/src/mat1e/matrix1e.h Examining data/bagel-1.2.2/src/mat1e/matrix1earray.h Examining data/bagel-1.2.2/src/mat1e/mixedbasis.h Examining data/bagel-1.2.2/src/mat1e/nai.cc Examining data/bagel-1.2.2/src/mat1e/nai.h Examining data/bagel-1.2.2/src/mat1e/overlap.cc Examining data/bagel-1.2.2/src/mat1e/overlap.h Examining data/bagel-1.2.2/src/mat1e/rel/breitint.cc Examining data/bagel-1.2.2/src/mat1e/rel/breitint.h Examining data/bagel-1.2.2/src/mat1e/rel/reldipole.cc Examining data/bagel-1.2.2/src/mat1e/rel/reldipole.h Examining data/bagel-1.2.2/src/mat1e/rel/relhcore.cc Examining data/bagel-1.2.2/src/mat1e/rel/relhcore.h Examining data/bagel-1.2.2/src/mat1e/rel/reloverlap.cc Examining data/bagel-1.2.2/src/mat1e/rel/reloverlap.h Examining data/bagel-1.2.2/src/mat1e/rel/small1e.cc Examining data/bagel-1.2.2/src/mat1e/rel/small1e.h Examining data/bagel-1.2.2/src/mat1e/rel/small1e_general.h Examining data/bagel-1.2.2/src/mat1e/rel/spinint.cc Examining data/bagel-1.2.2/src/mat1e/rel/spinint.h Examining data/bagel-1.2.2/src/mat1e/sohcore.cc Examining data/bagel-1.2.2/src/mat1e/sohcore.h Examining data/bagel-1.2.2/src/mat1e/spindipole.cc Examining data/bagel-1.2.2/src/mat1e/spindipole.h Examining data/bagel-1.2.2/src/molecule/atom.cc Examining data/bagel-1.2.2/src/molecule/atom.h Examining data/bagel-1.2.2/src/molecule/carsph_shell.h Examining data/bagel-1.2.2/src/molecule/ecp.cc Examining data/bagel-1.2.2/src/molecule/ecp.h Examining data/bagel-1.2.2/src/molecule/molecule.cc Examining data/bagel-1.2.2/src/molecule/molecule.h Examining data/bagel-1.2.2/src/molecule/molecule_connect.h Examining data/bagel-1.2.2/src/molecule/moment_compute.cc Examining data/bagel-1.2.2/src/molecule/moment_compute.h Examining data/bagel-1.2.2/src/molecule/petite.cc Examining data/bagel-1.2.2/src/molecule/petite.h Examining data/bagel-1.2.2/src/molecule/shell.cc Examining data/bagel-1.2.2/src/molecule/shell.h Examining data/bagel-1.2.2/src/molecule/shell_base.cc Examining data/bagel-1.2.2/src/molecule/shell_base.h Examining data/bagel-1.2.2/src/molecule/shellecp.cc Examining data/bagel-1.2.2/src/molecule/shellecp.h Examining data/bagel-1.2.2/src/molecule/shellpair.cc Examining data/bagel-1.2.2/src/molecule/shellpair.h Examining data/bagel-1.2.2/src/molecule/soecp.h Examining data/bagel-1.2.2/src/multi/casscf/casgrad.cc Examining data/bagel-1.2.2/src/multi/casscf/casnoopt.h Examining data/bagel-1.2.2/src/multi/casscf/casscf.cc Examining data/bagel-1.2.2/src/multi/casscf/casscf.h Examining data/bagel-1.2.2/src/multi/casscf/cassecond.cc Examining data/bagel-1.2.2/src/multi/casscf/cassecond.h Examining data/bagel-1.2.2/src/multi/casscf/qvec.cc Examining data/bagel-1.2.2/src/multi/casscf/qvec.h Examining data/bagel-1.2.2/src/multi/casscf/rotfile.cc Examining data/bagel-1.2.2/src/multi/casscf/rotfile.h Examining data/bagel-1.2.2/src/multi/zcasscf/zcasnoopt.cc Examining data/bagel-1.2.2/src/multi/zcasscf/zcasnoopt.h Examining data/bagel-1.2.2/src/multi/zcasscf/zcasscf.cc Examining data/bagel-1.2.2/src/multi/zcasscf/zcasscf.h Examining data/bagel-1.2.2/src/multi/zcasscf/zcassecond.cc Examining data/bagel-1.2.2/src/multi/zcasscf/zcassecond.h Examining data/bagel-1.2.2/src/multi/zcasscf/zcassecond_compute.cc Examining data/bagel-1.2.2/src/multi/zcasscf/zqvec.cc Examining data/bagel-1.2.2/src/multi/zcasscf/zqvec.h Examining data/bagel-1.2.2/src/opt/compute_mep.cc Examining data/bagel-1.2.2/src/opt/compute_opt.cc Examining data/bagel-1.2.2/src/opt/constraint.cc Examining data/bagel-1.2.2/src/opt/constraint.h Examining data/bagel-1.2.2/src/opt/get_grad.cc Examining data/bagel-1.2.2/src/opt/opt.cc Examining data/bagel-1.2.2/src/opt/opt.h Examining data/bagel-1.2.2/src/opt/optimize.cc Examining data/bagel-1.2.2/src/opt/optimize.h Examining data/bagel-1.2.2/src/opt/optinfo.h Examining data/bagel-1.2.2/src/opt/qmmm.cc Examining data/bagel-1.2.2/src/opt/qmmm.h Examining data/bagel-1.2.2/src/opt/update.cc Examining data/bagel-1.2.2/src/prop/current.cc Examining data/bagel-1.2.2/src/prop/current.h Examining data/bagel-1.2.2/src/prop/hyperfine.cc Examining data/bagel-1.2.2/src/prop/hyperfine.h Examining data/bagel-1.2.2/src/prop/momentum.cc Examining data/bagel-1.2.2/src/prop/momentum.h Examining data/bagel-1.2.2/src/prop/momentum_london.cc Examining data/bagel-1.2.2/src/prop/momentum_london.h Examining data/bagel-1.2.2/src/prop/momentum_point.cc Examining data/bagel-1.2.2/src/prop/momentum_point.h Examining data/bagel-1.2.2/src/prop/moprint.cc Examining data/bagel-1.2.2/src/prop/moprint.h Examining data/bagel-1.2.2/src/prop/multipole.cc Examining data/bagel-1.2.2/src/prop/multipole.h Examining data/bagel-1.2.2/src/prop/overlap_point.cc Examining data/bagel-1.2.2/src/prop/overlap_point.h Examining data/bagel-1.2.2/src/prop/pseudospin/pseudospin.cc Examining data/bagel-1.2.2/src/prop/pseudospin/pseudospin.h Examining data/bagel-1.2.2/src/prop/pseudospin/stevensop.cc Examining data/bagel-1.2.2/src/prop/sphmultipole.cc Examining data/bagel-1.2.2/src/prop/sphmultipole.h Examining data/bagel-1.2.2/src/pt2/dmp2/dmp2.cc Examining data/bagel-1.2.2/src/pt2/dmp2/dmp2.h Examining data/bagel-1.2.2/src/pt2/mp2/mp2.cc Examining data/bagel-1.2.2/src/pt2/mp2/mp2.h Examining data/bagel-1.2.2/src/pt2/mp2/mp2accum.h Examining data/bagel-1.2.2/src/pt2/mp2/mp2cache.cc Examining data/bagel-1.2.2/src/pt2/mp2/mp2cache.h Examining data/bagel-1.2.2/src/pt2/mp2/mp2grad.cc Examining data/bagel-1.2.2/src/pt2/mp2/mp2grad.h Examining data/bagel-1.2.2/src/pt2/nevpt2/nevpt2.cc Examining data/bagel-1.2.2/src/pt2/nevpt2/nevpt2.h Examining data/bagel-1.2.2/src/pt2/nevpt2/nevpt2_mat.cpp Examining data/bagel-1.2.2/src/pt2/nevpt2/nevpt2_rdm.cpp Examining data/bagel-1.2.2/src/response/cis.cc Examining data/bagel-1.2.2/src/response/cis.h Examining data/bagel-1.2.2/src/run_bagel.cc Examining data/bagel-1.2.2/src/scf/atomicdensities.cc Examining data/bagel-1.2.2/src/scf/atomicdensities.h Examining data/bagel-1.2.2/src/scf/dhf/dfock.cc Examining data/bagel-1.2.2/src/scf/dhf/dfock.h Examining data/bagel-1.2.2/src/scf/dhf/dirac.cc Examining data/bagel-1.2.2/src/scf/dhf/dirac.h Examining data/bagel-1.2.2/src/scf/dhf/diracgrad.cc Examining data/bagel-1.2.2/src/scf/dhf/population_analysis.h Examining data/bagel-1.2.2/src/scf/fmm/box.cc Examining data/bagel-1.2.2/src/scf/fmm/box.h Examining data/bagel-1.2.2/src/scf/fmm/fmm.cc Examining data/bagel-1.2.2/src/scf/fmm/fmm.h Examining data/bagel-1.2.2/src/scf/giaohf/fock_london.cc Examining data/bagel-1.2.2/src/scf/giaohf/fock_london.h Examining data/bagel-1.2.2/src/scf/giaohf/rhf_london.cc Examining data/bagel-1.2.2/src/scf/giaohf/rhf_london.h Examining data/bagel-1.2.2/src/scf/hf/fock.cc Examining data/bagel-1.2.2/src/scf/hf/fock.h Examining data/bagel-1.2.2/src/scf/hf/fock_base.cc Examining data/bagel-1.2.2/src/scf/hf/fock_base.h Examining data/bagel-1.2.2/src/scf/hf/rhf.cc Examining data/bagel-1.2.2/src/scf/hf/rhf.h Examining data/bagel-1.2.2/src/scf/hf/rohf.cc Examining data/bagel-1.2.2/src/scf/hf/rohf.h Examining data/bagel-1.2.2/src/scf/hf/uhf.cc Examining data/bagel-1.2.2/src/scf/hf/uhf.h Examining data/bagel-1.2.2/src/scf/ks/dftgrid.cc Examining data/bagel-1.2.2/src/scf/ks/dftgrid.h Examining data/bagel-1.2.2/src/scf/ks/grid.cc Examining data/bagel-1.2.2/src/scf/ks/grid.h Examining data/bagel-1.2.2/src/scf/ks/ks.cc Examining data/bagel-1.2.2/src/scf/ks/ks.h Examining data/bagel-1.2.2/src/scf/ks/lebedev.cc Examining data/bagel-1.2.2/src/scf/ks/lebedevlist.h Examining data/bagel-1.2.2/src/scf/ks/xcfunc.h Examining data/bagel-1.2.2/src/scf/levelshift.h Examining data/bagel-1.2.2/src/scf/scf_base.cc Examining data/bagel-1.2.2/src/scf/scf_base.h Examining data/bagel-1.2.2/src/scf/slater2e.cc Examining data/bagel-1.2.2/src/scf/sohf/sofock.cc Examining data/bagel-1.2.2/src/scf/sohf/sofock.h Examining data/bagel-1.2.2/src/scf/sohf/soscf.cc Examining data/bagel-1.2.2/src/scf/sohf/soscf.h Examining data/bagel-1.2.2/src/smith/casa/CASA.cc Examining data/bagel-1.2.2/src/smith/casa/CASA.h Examining data/bagel-1.2.2/src/smith/casa/CASA_gamma.cc Examining data/bagel-1.2.2/src/smith/casa/CASA_gen1.cc Examining data/bagel-1.2.2/src/smith/casa/CASA_gen2.cc Examining data/bagel-1.2.2/src/smith/casa/CASA_gen3.cc Examining data/bagel-1.2.2/src/smith/casa/CASA_gen4.cc Examining data/bagel-1.2.2/src/smith/casa/CASA_gen5.cc Examining data/bagel-1.2.2/src/smith/casa/CASA_gen6.cc Examining data/bagel-1.2.2/src/smith/casa/CASA_residualq.cc Examining data/bagel-1.2.2/src/smith/casa/CASA_sourceq.cc Examining data/bagel-1.2.2/src/smith/casa/CASA_tasks.h Examining data/bagel-1.2.2/src/smith/casa/CASA_tasks1.cc Examining data/bagel-1.2.2/src/smith/casa/CASA_tasks1.h Examining data/bagel-1.2.2/src/smith/casa/CASA_tasks2.cc Examining data/bagel-1.2.2/src/smith/casa/CASA_tasks2.h Examining data/bagel-1.2.2/src/smith/casa/CASA_tasks3.cc Examining data/bagel-1.2.2/src/smith/casa/CASA_tasks3.h Examining data/bagel-1.2.2/src/smith/casa/CASA_tasks4.cc Examining data/bagel-1.2.2/src/smith/casa/CASA_tasks4.h Examining data/bagel-1.2.2/src/smith/casa/CASA_tasks5.cc Examining data/bagel-1.2.2/src/smith/casa/CASA_tasks5.h Examining data/bagel-1.2.2/src/smith/casa/CASA_tasks6.cc Examining data/bagel-1.2.2/src/smith/casa/CASA_tasks6.h Examining data/bagel-1.2.2/src/smith/caspt2/CASPT2.cc Examining data/bagel-1.2.2/src/smith/caspt2/CASPT2.h Examining data/bagel-1.2.2/src/smith/caspt2/CASPT2_contract.cc Examining data/bagel-1.2.2/src/smith/caspt2/CASPT2_deciq.cc Examining data/bagel-1.2.2/src/smith/caspt2/CASPT2_density1q.cc Examining data/bagel-1.2.2/src/smith/caspt2/CASPT2_density2q.cc Examining data/bagel-1.2.2/src/smith/caspt2/CASPT2_densityq.cc Examining data/bagel-1.2.2/src/smith/caspt2/CASPT2_gamma.cc Examining data/bagel-1.2.2/src/smith/caspt2/CASPT2_gen1.cc Examining data/bagel-1.2.2/src/smith/caspt2/CASPT2_gen10.cc Examining data/bagel-1.2.2/src/smith/caspt2/CASPT2_gen11.cc Examining data/bagel-1.2.2/src/smith/caspt2/CASPT2_gen12.cc Examining data/bagel-1.2.2/src/smith/caspt2/CASPT2_gen13.cc Examining data/bagel-1.2.2/src/smith/caspt2/CASPT2_gen14.cc Examining data/bagel-1.2.2/src/smith/caspt2/CASPT2_gen15.cc Examining data/bagel-1.2.2/src/smith/caspt2/CASPT2_gen16.cc Examining data/bagel-1.2.2/src/smith/caspt2/CASPT2_gen2.cc Examining data/bagel-1.2.2/src/smith/caspt2/CASPT2_gen3.cc Examining data/bagel-1.2.2/src/smith/caspt2/CASPT2_gen4.cc Examining data/bagel-1.2.2/src/smith/caspt2/CASPT2_gen5.cc Examining data/bagel-1.2.2/src/smith/caspt2/CASPT2_gen6.cc Examining data/bagel-1.2.2/src/smith/caspt2/CASPT2_gen7.cc Examining data/bagel-1.2.2/src/smith/caspt2/CASPT2_gen8.cc Examining data/bagel-1.2.2/src/smith/caspt2/CASPT2_gen9.cc Examining data/bagel-1.2.2/src/smith/caspt2/CASPT2_normq.cc Examining data/bagel-1.2.2/src/smith/caspt2/CASPT2_residualq.cc Examining data/bagel-1.2.2/src/smith/caspt2/CASPT2_sourceq.cc Examining data/bagel-1.2.2/src/smith/caspt2/CASPT2_tasks.h Examining data/bagel-1.2.2/src/smith/caspt2/CASPT2_tasks1.cc Examining data/bagel-1.2.2/src/smith/caspt2/CASPT2_tasks1.h Examining data/bagel-1.2.2/src/smith/caspt2/CASPT2_tasks10.cc Examining data/bagel-1.2.2/src/smith/caspt2/CASPT2_tasks10.h Examining data/bagel-1.2.2/src/smith/caspt2/CASPT2_tasks11.cc Examining data/bagel-1.2.2/src/smith/caspt2/CASPT2_tasks11.h Examining data/bagel-1.2.2/src/smith/caspt2/CASPT2_tasks12.cc Examining data/bagel-1.2.2/src/smith/caspt2/CASPT2_tasks12.h Examining data/bagel-1.2.2/src/smith/caspt2/CASPT2_tasks13.cc Examining data/bagel-1.2.2/src/smith/caspt2/CASPT2_tasks13.h Examining data/bagel-1.2.2/src/smith/caspt2/CASPT2_tasks14.cc Examining data/bagel-1.2.2/src/smith/caspt2/CASPT2_tasks14.h Examining data/bagel-1.2.2/src/smith/caspt2/CASPT2_tasks15.cc Examining data/bagel-1.2.2/src/smith/caspt2/CASPT2_tasks15.h Examining data/bagel-1.2.2/src/smith/caspt2/CASPT2_tasks16.cc Examining data/bagel-1.2.2/src/smith/caspt2/CASPT2_tasks16.h Examining data/bagel-1.2.2/src/smith/caspt2/CASPT2_tasks2.cc Examining data/bagel-1.2.2/src/smith/caspt2/CASPT2_tasks2.h Examining data/bagel-1.2.2/src/smith/caspt2/CASPT2_tasks3.cc Examining data/bagel-1.2.2/src/smith/caspt2/CASPT2_tasks3.h Examining data/bagel-1.2.2/src/smith/caspt2/CASPT2_tasks4.cc Examining data/bagel-1.2.2/src/smith/caspt2/CASPT2_tasks4.h Examining data/bagel-1.2.2/src/smith/caspt2/CASPT2_tasks5.cc Examining data/bagel-1.2.2/src/smith/caspt2/CASPT2_tasks5.h Examining data/bagel-1.2.2/src/smith/caspt2/CASPT2_tasks6.cc Examining data/bagel-1.2.2/src/smith/caspt2/CASPT2_tasks6.h Examining data/bagel-1.2.2/src/smith/caspt2/CASPT2_tasks7.cc Examining data/bagel-1.2.2/src/smith/caspt2/CASPT2_tasks7.h Examining data/bagel-1.2.2/src/smith/caspt2/CASPT2_tasks8.cc Examining data/bagel-1.2.2/src/smith/caspt2/CASPT2_tasks8.h Examining data/bagel-1.2.2/src/smith/caspt2/CASPT2_tasks9.cc Examining data/bagel-1.2.2/src/smith/caspt2/CASPT2_tasks9.h Examining data/bagel-1.2.2/src/smith/caspt2/MSCASPT2.cc Examining data/bagel-1.2.2/src/smith/caspt2/MSCASPT2.h Examining data/bagel-1.2.2/src/smith/caspt2/MSCASPT2_contract.cc Examining data/bagel-1.2.2/src/smith/caspt2/MSCASPT2_deci2q.cc Examining data/bagel-1.2.2/src/smith/caspt2/MSCASPT2_deci3q.cc Examining data/bagel-1.2.2/src/smith/caspt2/MSCASPT2_deci4q.cc Examining data/bagel-1.2.2/src/smith/caspt2/MSCASPT2_deciq.cc Examining data/bagel-1.2.2/src/smith/caspt2/MSCASPT2_density1q.cc Examining data/bagel-1.2.2/src/smith/caspt2/MSCASPT2_density2q.cc Examining data/bagel-1.2.2/src/smith/caspt2/MSCASPT2_densityq.cc Examining data/bagel-1.2.2/src/smith/caspt2/MSCASPT2_gamma.cc Examining data/bagel-1.2.2/src/smith/caspt2/MSCASPT2_gen1.cc Examining data/bagel-1.2.2/src/smith/caspt2/MSCASPT2_gen10.cc Examining data/bagel-1.2.2/src/smith/caspt2/MSCASPT2_gen11.cc Examining data/bagel-1.2.2/src/smith/caspt2/MSCASPT2_gen12.cc Examining data/bagel-1.2.2/src/smith/caspt2/MSCASPT2_gen2.cc Examining data/bagel-1.2.2/src/smith/caspt2/MSCASPT2_gen3.cc Examining data/bagel-1.2.2/src/smith/caspt2/MSCASPT2_gen4.cc Examining data/bagel-1.2.2/src/smith/caspt2/MSCASPT2_gen5.cc Examining data/bagel-1.2.2/src/smith/caspt2/MSCASPT2_gen6.cc Examining data/bagel-1.2.2/src/smith/caspt2/MSCASPT2_gen7.cc Examining data/bagel-1.2.2/src/smith/caspt2/MSCASPT2_gen8.cc Examining data/bagel-1.2.2/src/smith/caspt2/MSCASPT2_gen9.cc Examining data/bagel-1.2.2/src/smith/caspt2/MSCASPT2_shift.cc Examining data/bagel-1.2.2/src/smith/caspt2/MSCASPT2_tasks.h Examining data/bagel-1.2.2/src/smith/caspt2/MSCASPT2_tasks1.cc Examining data/bagel-1.2.2/src/smith/caspt2/MSCASPT2_tasks1.h Examining data/bagel-1.2.2/src/smith/caspt2/MSCASPT2_tasks10.cc Examining data/bagel-1.2.2/src/smith/caspt2/MSCASPT2_tasks10.h Examining data/bagel-1.2.2/src/smith/caspt2/MSCASPT2_tasks11.cc Examining data/bagel-1.2.2/src/smith/caspt2/MSCASPT2_tasks11.h Examining data/bagel-1.2.2/src/smith/caspt2/MSCASPT2_tasks12.cc Examining data/bagel-1.2.2/src/smith/caspt2/MSCASPT2_tasks12.h Examining data/bagel-1.2.2/src/smith/caspt2/MSCASPT2_tasks2.cc Examining data/bagel-1.2.2/src/smith/caspt2/MSCASPT2_tasks2.h Examining data/bagel-1.2.2/src/smith/caspt2/MSCASPT2_tasks3.cc Examining data/bagel-1.2.2/src/smith/caspt2/MSCASPT2_tasks3.h Examining data/bagel-1.2.2/src/smith/caspt2/MSCASPT2_tasks4.cc Examining data/bagel-1.2.2/src/smith/caspt2/MSCASPT2_tasks4.h Examining data/bagel-1.2.2/src/smith/caspt2/MSCASPT2_tasks5.cc Examining data/bagel-1.2.2/src/smith/caspt2/MSCASPT2_tasks5.h Examining data/bagel-1.2.2/src/smith/caspt2/MSCASPT2_tasks6.cc Examining data/bagel-1.2.2/src/smith/caspt2/MSCASPT2_tasks6.h Examining data/bagel-1.2.2/src/smith/caspt2/MSCASPT2_tasks7.cc Examining data/bagel-1.2.2/src/smith/caspt2/MSCASPT2_tasks7.h Examining data/bagel-1.2.2/src/smith/caspt2/MSCASPT2_tasks8.cc Examining data/bagel-1.2.2/src/smith/caspt2/MSCASPT2_tasks8.h Examining data/bagel-1.2.2/src/smith/caspt2/MSCASPT2_tasks9.cc Examining data/bagel-1.2.2/src/smith/caspt2/MSCASPT2_tasks9.h Examining data/bagel-1.2.2/src/smith/caspt2/SPCASPT2.cc Examining data/bagel-1.2.2/src/smith/caspt2/SPCASPT2.h Examining data/bagel-1.2.2/src/smith/caspt2/SPCASPT2_density1q.cc Examining data/bagel-1.2.2/src/smith/caspt2/SPCASPT2_densityq.cc Examining data/bagel-1.2.2/src/smith/caspt2/SPCASPT2_gamma.cc Examining data/bagel-1.2.2/src/smith/caspt2/SPCASPT2_gen1.cc Examining data/bagel-1.2.2/src/smith/caspt2/SPCASPT2_gen2.cc Examining data/bagel-1.2.2/src/smith/caspt2/SPCASPT2_gen3.cc Examining data/bagel-1.2.2/src/smith/caspt2/SPCASPT2_gen4.cc Examining data/bagel-1.2.2/src/smith/caspt2/SPCASPT2_gen5.cc Examining data/bagel-1.2.2/src/smith/caspt2/SPCASPT2_gen6.cc Examining data/bagel-1.2.2/src/smith/caspt2/SPCASPT2_tasks.h Examining data/bagel-1.2.2/src/smith/caspt2/SPCASPT2_tasks1.cc Examining data/bagel-1.2.2/src/smith/caspt2/SPCASPT2_tasks1.h Examining data/bagel-1.2.2/src/smith/caspt2/SPCASPT2_tasks2.cc Examining data/bagel-1.2.2/src/smith/caspt2/SPCASPT2_tasks2.h Examining data/bagel-1.2.2/src/smith/caspt2/SPCASPT2_tasks3.cc Examining data/bagel-1.2.2/src/smith/caspt2/SPCASPT2_tasks3.h Examining data/bagel-1.2.2/src/smith/caspt2/SPCASPT2_tasks4.cc Examining data/bagel-1.2.2/src/smith/caspt2/SPCASPT2_tasks4.h Examining data/bagel-1.2.2/src/smith/caspt2/SPCASPT2_tasks5.cc Examining data/bagel-1.2.2/src/smith/caspt2/SPCASPT2_tasks5.h Examining data/bagel-1.2.2/src/smith/caspt2/SPCASPT2_tasks6.cc Examining data/bagel-1.2.2/src/smith/caspt2/SPCASPT2_tasks6.h Examining data/bagel-1.2.2/src/smith/caspt2energy.cc Examining data/bagel-1.2.2/src/smith/caspt2grad.cc Examining data/bagel-1.2.2/src/smith/caspt2grad.h Examining data/bagel-1.2.2/src/smith/caspt2grad_util.cc Examining data/bagel-1.2.2/src/smith/denom.cc Examining data/bagel-1.2.2/src/smith/denom.h Examining data/bagel-1.2.2/src/smith/diagonal.cc Examining data/bagel-1.2.2/src/smith/extrap.h Examining data/bagel-1.2.2/src/smith/futuretensor.cc Examining data/bagel-1.2.2/src/smith/futuretensor.h Examining data/bagel-1.2.2/src/smith/indexrange.cc Examining data/bagel-1.2.2/src/smith/indexrange.h Examining data/bagel-1.2.2/src/smith/loopgenerator.h Examining data/bagel-1.2.2/src/smith/moint.cc Examining data/bagel-1.2.2/src/smith/moint.h Examining data/bagel-1.2.2/src/smith/mrci/MRCI.cc Examining data/bagel-1.2.2/src/smith/mrci/MRCI.h Examining data/bagel-1.2.2/src/smith/mrci/MRCI_gamma.cc Examining data/bagel-1.2.2/src/smith/mrci/MRCI_gen1.cc Examining data/bagel-1.2.2/src/smith/mrci/MRCI_gen10.cc Examining data/bagel-1.2.2/src/smith/mrci/MRCI_gen11.cc Examining data/bagel-1.2.2/src/smith/mrci/MRCI_gen12.cc Examining data/bagel-1.2.2/src/smith/mrci/MRCI_gen13.cc Examining data/bagel-1.2.2/src/smith/mrci/MRCI_gen14.cc Examining data/bagel-1.2.2/src/smith/mrci/MRCI_gen15.cc Examining data/bagel-1.2.2/src/smith/mrci/MRCI_gen16.cc Examining data/bagel-1.2.2/src/smith/mrci/MRCI_gen17.cc Examining data/bagel-1.2.2/src/smith/mrci/MRCI_gen18.cc Examining data/bagel-1.2.2/src/smith/mrci/MRCI_gen19.cc Examining data/bagel-1.2.2/src/smith/mrci/MRCI_gen2.cc Examining data/bagel-1.2.2/src/smith/mrci/MRCI_gen20.cc Examining data/bagel-1.2.2/src/smith/mrci/MRCI_gen3.cc Examining data/bagel-1.2.2/src/smith/mrci/MRCI_gen4.cc Examining data/bagel-1.2.2/src/smith/mrci/MRCI_gen5.cc Examining data/bagel-1.2.2/src/smith/mrci/MRCI_gen6.cc Examining data/bagel-1.2.2/src/smith/mrci/MRCI_gen7.cc Examining data/bagel-1.2.2/src/smith/mrci/MRCI_gen8.cc Examining data/bagel-1.2.2/src/smith/mrci/MRCI_gen9.cc Examining data/bagel-1.2.2/src/smith/mrci/MRCI_normq.cc Examining data/bagel-1.2.2/src/smith/mrci/MRCI_residualq1.cc Examining data/bagel-1.2.2/src/smith/mrci/MRCI_residualq2.cc Examining data/bagel-1.2.2/src/smith/mrci/MRCI_residualq3.cc Examining data/bagel-1.2.2/src/smith/mrci/MRCI_residualq4.cc Examining data/bagel-1.2.2/src/smith/mrci/MRCI_residualq5.cc Examining data/bagel-1.2.2/src/smith/mrci/MRCI_residualq6.cc Examining data/bagel-1.2.2/src/smith/mrci/MRCI_residualq7.cc Examining data/bagel-1.2.2/src/smith/mrci/MRCI_residualq8.cc Examining data/bagel-1.2.2/src/smith/mrci/MRCI_residualq9.cc Examining data/bagel-1.2.2/src/smith/mrci/MRCI_sourceq.cc Examining data/bagel-1.2.2/src/smith/mrci/MRCI_tasks.h Examining data/bagel-1.2.2/src/smith/mrci/MRCI_tasks1.cc Examining data/bagel-1.2.2/src/smith/mrci/MRCI_tasks1.h Examining data/bagel-1.2.2/src/smith/mrci/MRCI_tasks10.cc Examining data/bagel-1.2.2/src/smith/mrci/MRCI_tasks10.h Examining data/bagel-1.2.2/src/smith/mrci/MRCI_tasks11.cc Examining data/bagel-1.2.2/src/smith/mrci/MRCI_tasks11.h Examining data/bagel-1.2.2/src/smith/mrci/MRCI_tasks12.cc Examining data/bagel-1.2.2/src/smith/mrci/MRCI_tasks12.h Examining data/bagel-1.2.2/src/smith/mrci/MRCI_tasks13.cc Examining data/bagel-1.2.2/src/smith/mrci/MRCI_tasks13.h Examining data/bagel-1.2.2/src/smith/mrci/MRCI_tasks14.cc Examining data/bagel-1.2.2/src/smith/mrci/MRCI_tasks14.h Examining data/bagel-1.2.2/src/smith/mrci/MRCI_tasks15.cc Examining data/bagel-1.2.2/src/smith/mrci/MRCI_tasks15.h Examining data/bagel-1.2.2/src/smith/mrci/MRCI_tasks16.cc Examining data/bagel-1.2.2/src/smith/mrci/MRCI_tasks16.h Examining data/bagel-1.2.2/src/smith/mrci/MRCI_tasks17.cc Examining data/bagel-1.2.2/src/smith/mrci/MRCI_tasks17.h Examining data/bagel-1.2.2/src/smith/mrci/MRCI_tasks18.cc Examining data/bagel-1.2.2/src/smith/mrci/MRCI_tasks18.h Examining data/bagel-1.2.2/src/smith/mrci/MRCI_tasks19.cc Examining data/bagel-1.2.2/src/smith/mrci/MRCI_tasks19.h Examining data/bagel-1.2.2/src/smith/mrci/MRCI_tasks2.cc Examining data/bagel-1.2.2/src/smith/mrci/MRCI_tasks2.h Examining data/bagel-1.2.2/src/smith/mrci/MRCI_tasks20.cc Examining data/bagel-1.2.2/src/smith/mrci/MRCI_tasks20.h Examining data/bagel-1.2.2/src/smith/mrci/MRCI_tasks3.cc Examining data/bagel-1.2.2/src/smith/mrci/MRCI_tasks3.h Examining data/bagel-1.2.2/src/smith/mrci/MRCI_tasks4.cc Examining data/bagel-1.2.2/src/smith/mrci/MRCI_tasks4.h Examining data/bagel-1.2.2/src/smith/mrci/MRCI_tasks5.cc Examining data/bagel-1.2.2/src/smith/mrci/MRCI_tasks5.h Examining data/bagel-1.2.2/src/smith/mrci/MRCI_tasks6.cc Examining data/bagel-1.2.2/src/smith/mrci/MRCI_tasks6.h Examining data/bagel-1.2.2/src/smith/mrci/MRCI_tasks7.cc Examining data/bagel-1.2.2/src/smith/mrci/MRCI_tasks7.h Examining data/bagel-1.2.2/src/smith/mrci/MRCI_tasks8.cc Examining data/bagel-1.2.2/src/smith/mrci/MRCI_tasks8.h Examining data/bagel-1.2.2/src/smith/mrci/MRCI_tasks9.cc Examining data/bagel-1.2.2/src/smith/mrci/MRCI_tasks9.h Examining data/bagel-1.2.2/src/smith/multitensor.cc Examining data/bagel-1.2.2/src/smith/multitensor.h Examining data/bagel-1.2.2/src/smith/orthogonal.cc Examining data/bagel-1.2.2/src/smith/orthogonal.h Examining data/bagel-1.2.2/src/smith/orthogonal_shift.cc Examining data/bagel-1.2.2/src/smith/queue.cc Examining data/bagel-1.2.2/src/smith/queue.h Examining data/bagel-1.2.2/src/smith/relcasa/RelCASA.cc Examining data/bagel-1.2.2/src/smith/relcasa/RelCASA.h Examining data/bagel-1.2.2/src/smith/relcasa/RelCASA_gamma.cc Examining data/bagel-1.2.2/src/smith/relcasa/RelCASA_gen1.cc Examining data/bagel-1.2.2/src/smith/relcasa/RelCASA_gen2.cc Examining data/bagel-1.2.2/src/smith/relcasa/RelCASA_gen3.cc Examining data/bagel-1.2.2/src/smith/relcasa/RelCASA_gen4.cc Examining data/bagel-1.2.2/src/smith/relcasa/RelCASA_gen5.cc Examining data/bagel-1.2.2/src/smith/relcasa/RelCASA_gen6.cc Examining data/bagel-1.2.2/src/smith/relcasa/RelCASA_residualq.cc Examining data/bagel-1.2.2/src/smith/relcasa/RelCASA_sourceq.cc Examining data/bagel-1.2.2/src/smith/relcasa/RelCASA_tasks.h Examining data/bagel-1.2.2/src/smith/relcasa/RelCASA_tasks1.cc Examining data/bagel-1.2.2/src/smith/relcasa/RelCASA_tasks1.h Examining data/bagel-1.2.2/src/smith/relcasa/RelCASA_tasks2.cc Examining data/bagel-1.2.2/src/smith/relcasa/RelCASA_tasks2.h Examining data/bagel-1.2.2/src/smith/relcasa/RelCASA_tasks3.cc Examining data/bagel-1.2.2/src/smith/relcasa/RelCASA_tasks3.h Examining data/bagel-1.2.2/src/smith/relcasa/RelCASA_tasks4.cc Examining data/bagel-1.2.2/src/smith/relcasa/RelCASA_tasks4.h Examining data/bagel-1.2.2/src/smith/relcasa/RelCASA_tasks5.cc Examining data/bagel-1.2.2/src/smith/relcasa/RelCASA_tasks5.h Examining data/bagel-1.2.2/src/smith/relcasa/RelCASA_tasks6.cc Examining data/bagel-1.2.2/src/smith/relcasa/RelCASA_tasks6.h Examining data/bagel-1.2.2/src/smith/relcaspt2/RelCASPT2.cc Examining data/bagel-1.2.2/src/smith/relcaspt2/RelCASPT2.h Examining data/bagel-1.2.2/src/smith/relcaspt2/RelCASPT2_gamma.cc Examining data/bagel-1.2.2/src/smith/relcaspt2/RelCASPT2_gen1.cc Examining data/bagel-1.2.2/src/smith/relcaspt2/RelCASPT2_gen2.cc Examining data/bagel-1.2.2/src/smith/relcaspt2/RelCASPT2_gen3.cc Examining data/bagel-1.2.2/src/smith/relcaspt2/RelCASPT2_gen4.cc Examining data/bagel-1.2.2/src/smith/relcaspt2/RelCASPT2_gen5.cc Examining data/bagel-1.2.2/src/smith/relcaspt2/RelCASPT2_gen6.cc Examining data/bagel-1.2.2/src/smith/relcaspt2/RelCASPT2_normq.cc Examining data/bagel-1.2.2/src/smith/relcaspt2/RelCASPT2_residualq.cc Examining data/bagel-1.2.2/src/smith/relcaspt2/RelCASPT2_sourceq.cc Examining data/bagel-1.2.2/src/smith/relcaspt2/RelCASPT2_tasks.h Examining data/bagel-1.2.2/src/smith/relcaspt2/RelCASPT2_tasks1.cc Examining data/bagel-1.2.2/src/smith/relcaspt2/RelCASPT2_tasks1.h Examining data/bagel-1.2.2/src/smith/relcaspt2/RelCASPT2_tasks2.cc Examining data/bagel-1.2.2/src/smith/relcaspt2/RelCASPT2_tasks2.h Examining data/bagel-1.2.2/src/smith/relcaspt2/RelCASPT2_tasks3.cc Examining data/bagel-1.2.2/src/smith/relcaspt2/RelCASPT2_tasks3.h Examining data/bagel-1.2.2/src/smith/relcaspt2/RelCASPT2_tasks4.cc Examining data/bagel-1.2.2/src/smith/relcaspt2/RelCASPT2_tasks4.h Examining data/bagel-1.2.2/src/smith/relcaspt2/RelCASPT2_tasks5.cc Examining data/bagel-1.2.2/src/smith/relcaspt2/RelCASPT2_tasks5.h Examining data/bagel-1.2.2/src/smith/relcaspt2/RelCASPT2_tasks6.cc Examining data/bagel-1.2.2/src/smith/relcaspt2/RelCASPT2_tasks6.h Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI.cc Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI.h Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_gamma.cc Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_gen1.cc Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_gen10.cc Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_gen11.cc Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_gen12.cc Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_gen13.cc Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_gen14.cc Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_gen15.cc Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_gen16.cc Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_gen2.cc Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_gen3.cc Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_gen4.cc Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_gen5.cc Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_gen6.cc Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_gen7.cc Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_gen8.cc Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_gen9.cc Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_normq.cc Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_residualq.cc Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_residualq1.cc Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_residualq2.cc Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_residualq3.cc Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_residualq4.cc Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_residualq5.cc Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_residualq6.cc Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_sourceq.cc Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_tasks.h Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_tasks1.cc Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_tasks1.h Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_tasks10.cc Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_tasks10.h Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_tasks11.cc Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_tasks11.h Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_tasks12.cc Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_tasks12.h Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_tasks13.cc Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_tasks13.h Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_tasks14.cc Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_tasks14.h Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_tasks15.cc Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_tasks15.h Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_tasks16.cc Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_tasks16.h Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_tasks2.cc Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_tasks2.h Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_tasks3.cc Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_tasks3.h Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_tasks4.cc Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_tasks4.h Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_tasks5.cc Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_tasks5.h Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_tasks6.cc Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_tasks6.h Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_tasks7.cc Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_tasks7.h Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_tasks8.cc Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_tasks8.h Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_tasks9.cc Examining data/bagel-1.2.2/src/smith/relmrci/RelMRCI_tasks9.h Examining data/bagel-1.2.2/src/smith/smith.cc Examining data/bagel-1.2.2/src/smith/smith.h Examining data/bagel-1.2.2/src/smith/smith_info.cc Examining data/bagel-1.2.2/src/smith/smith_info.h Examining data/bagel-1.2.2/src/smith/smith_util.h Examining data/bagel-1.2.2/src/smith/spinfreebase.cc Examining data/bagel-1.2.2/src/smith/spinfreebase.h Examining data/bagel-1.2.2/src/smith/spinfreebase_update.cpp Examining data/bagel-1.2.2/src/smith/storage.cc Examining data/bagel-1.2.2/src/smith/storage.h Examining data/bagel-1.2.2/src/smith/storagekramers.cc Examining data/bagel-1.2.2/src/smith/storagekramers.h Examining data/bagel-1.2.2/src/smith/subtask.cc Examining data/bagel-1.2.2/src/smith/subtask.h Examining data/bagel-1.2.2/src/smith/task.h Examining data/bagel-1.2.2/src/smith/tensor.cc Examining data/bagel-1.2.2/src/smith/tensor.h Examining data/bagel-1.2.2/src/static.cc Examining data/bagel-1.2.2/src/test_main.cc Examining data/bagel-1.2.2/src/testimpl/test_asd.cc Examining data/bagel-1.2.2/src/testimpl/test_asd_dmrg.cc Examining data/bagel-1.2.2/src/testimpl/test_casscf.cc Examining data/bagel-1.2.2/src/testimpl/test_fci.cc Examining data/bagel-1.2.2/src/testimpl/test_force.cc Examining data/bagel-1.2.2/src/testimpl/test_ks.cc Examining data/bagel-1.2.2/src/testimpl/test_localize.cc Examining data/bagel-1.2.2/src/testimpl/test_london.cc Examining data/bagel-1.2.2/src/testimpl/test_molden.cc Examining data/bagel-1.2.2/src/testimpl/test_mp2.cc Examining data/bagel-1.2.2/src/testimpl/test_nevpt2.cc Examining data/bagel-1.2.2/src/testimpl/test_opt.cc Examining data/bagel-1.2.2/src/testimpl/test_prop.cc Examining data/bagel-1.2.2/src/testimpl/test_ras.cc Examining data/bagel-1.2.2/src/testimpl/test_rel.cc Examining data/bagel-1.2.2/src/testimpl/test_response.cc Examining data/bagel-1.2.2/src/testimpl/test_scf.cc Examining data/bagel-1.2.2/src/testimpl/test_smith.cc Examining data/bagel-1.2.2/src/testimpl/test_zfci.cc Examining data/bagel-1.2.2/src/testimpl/test_pseudospin.cc Examining data/bagel-1.2.2/src/testimpl/test_zcasscf.cc Examining data/bagel-1.2.2/src/util/alpha.h Examining data/bagel-1.2.2/src/util/archive.h Examining data/bagel-1.2.2/src/util/atommap.cc Examining data/bagel-1.2.2/src/util/atommap.h Examining data/bagel-1.2.2/src/util/combination.hpp Examining data/bagel-1.2.2/src/util/constants.h Examining data/bagel-1.2.2/src/util/exception.h Examining data/bagel-1.2.2/src/util/f77.h Examining data/bagel-1.2.2/src/util/f77_interface.cc Examining data/bagel-1.2.2/src/util/input/input.cc Examining data/bagel-1.2.2/src/util/input/input.h Examining data/bagel-1.2.2/src/util/io/dfpcmo.cc Examining data/bagel-1.2.2/src/util/io/dfpcmo.h Examining data/bagel-1.2.2/src/util/io/fileio.h Examining data/bagel-1.2.2/src/util/io/molden_transforms.cc Examining data/bagel-1.2.2/src/util/io/moldenin.cc Examining data/bagel-1.2.2/src/util/io/moldenin.h Examining data/bagel-1.2.2/src/util/io/moldenio.cc Examining data/bagel-1.2.2/src/util/io/moldenio.h Examining data/bagel-1.2.2/src/util/io/moldenout.cc Examining data/bagel-1.2.2/src/util/io/moldenout.h Examining data/bagel-1.2.2/src/util/kramers.h Examining data/bagel-1.2.2/src/util/math/algo.cc Examining data/bagel-1.2.2/src/util/math/algo.h Examining data/bagel-1.2.2/src/util/math/aughess.h Examining data/bagel-1.2.2/src/util/math/bessel.h Examining data/bagel-1.2.2/src/util/math/bfgs.h Examining data/bagel-1.2.2/src/util/math/blocksparsematrix.cc Examining data/bagel-1.2.2/src/util/math/blocksparsematrix.h Examining data/bagel-1.2.2/src/util/math/btas_interface.cc Examining data/bagel-1.2.2/src/util/math/btas_interface.h Examining data/bagel-1.2.2/src/util/math/btas_varray.h Examining data/bagel-1.2.2/src/util/math/comb.h Examining data/bagel-1.2.2/src/util/math/csymmatrix.cc Examining data/bagel-1.2.2/src/util/math/csymmatrix.h Examining data/bagel-1.2.2/src/util/math/davidson.h Examining data/bagel-1.2.2/src/util/math/diagmatrix.h Examining data/bagel-1.2.2/src/util/math/diis.h Examining data/bagel-1.2.2/src/util/math/distmatrix.cc Examining data/bagel-1.2.2/src/util/math/distmatrix_base.cc Examining data/bagel-1.2.2/src/util/math/distmatrix_base.h Examining data/bagel-1.2.2/src/util/math/distzmatrix.cc Examining data/bagel-1.2.2/src/util/math/factorial.h Examining data/bagel-1.2.2/src/util/math/gamma.h Examining data/bagel-1.2.2/src/util/math/jacobi.cc Examining data/bagel-1.2.2/src/util/math/jacobi.h Examining data/bagel-1.2.2/src/util/math/jacobi_pairs.h Examining data/bagel-1.2.2/src/util/math/legendre.h Examining data/bagel-1.2.2/src/util/math/linearRM.h Examining data/bagel-1.2.2/src/util/math/matop.h Examining data/bagel-1.2.2/src/util/math/matrix.cc Examining data/bagel-1.2.2/src/util/math/matrix.h Examining data/bagel-1.2.2/src/util/math/matrix_base.cc Examining data/bagel-1.2.2/src/util/math/matrix_base.h Examining data/bagel-1.2.2/src/util/math/matview.cc Examining data/bagel-1.2.2/src/util/math/matview.h Examining data/bagel-1.2.2/src/util/math/pairfile.h Examining data/bagel-1.2.2/src/util/math/preallocarray.cc Examining data/bagel-1.2.2/src/util/math/preallocarray.h Examining data/bagel-1.2.2/src/util/math/quatern.cc Examining data/bagel-1.2.2/src/util/math/quatern.h Examining data/bagel-1.2.2/src/util/math/quatmatrix.h Examining data/bagel-1.2.2/src/util/math/sparsematrix.cc Examining data/bagel-1.2.2/src/util/math/sparsematrix.h Examining data/bagel-1.2.2/src/util/math/sphharmonics.cc Examining data/bagel-1.2.2/src/util/math/sphharmonics.h Examining data/bagel-1.2.2/src/util/math/step_restrict_bfgs.h Examining data/bagel-1.2.2/src/util/math/transpose.cc Examining data/bagel-1.2.2/src/util/math/vectorb.h Examining data/bagel-1.2.2/src/util/math/xyzfile.cc Examining data/bagel-1.2.2/src/util/math/xyzfile.h Examining data/bagel-1.2.2/src/util/math/zmatrix.cc Examining data/bagel-1.2.2/src/util/math/zmatrix.h Examining data/bagel-1.2.2/src/util/math/zquatev/blocked.cc Examining data/bagel-1.2.2/src/util/math/zquatev/f77.h Examining data/bagel-1.2.2/src/util/math/zquatev/supermat.h Examining data/bagel-1.2.2/src/util/math/zquatev/transpose.cc Examining data/bagel-1.2.2/src/util/math/zquatev/unblocked.cc Examining data/bagel-1.2.2/src/util/math/zquatev/zquatev.cc Examining data/bagel-1.2.2/src/util/math/zquatev/zquatev.h Examining data/bagel-1.2.2/src/util/math/ztranspose.cc Examining data/bagel-1.2.2/src/util/mkl_ext.h Examining data/bagel-1.2.2/src/util/muffle.h Examining data/bagel-1.2.2/src/util/parallel/mpi_interface.cc Examining data/bagel-1.2.2/src/util/parallel/mpi_interface.h Examining data/bagel-1.2.2/src/util/parallel/process.cc Examining data/bagel-1.2.2/src/util/parallel/process.h Examining data/bagel-1.2.2/src/util/parallel/resources.cc Examining data/bagel-1.2.2/src/util/parallel/resources.h Examining data/bagel-1.2.2/src/util/parallel/rmawindow.cc Examining data/bagel-1.2.2/src/util/parallel/rmawindow.h Examining data/bagel-1.2.2/src/util/parallel/scalapack.h Examining data/bagel-1.2.2/src/util/parallel/staticdist.h Examining data/bagel-1.2.2/src/util/prim_op.h Examining data/bagel-1.2.2/src/util/prim_op_var.h Examining data/bagel-1.2.2/src/util/serialization.h Examining data/bagel-1.2.2/src/util/simple.h Examining data/bagel-1.2.2/src/util/spinorinfo.h Examining data/bagel-1.2.2/src/util/string_util.h Examining data/bagel-1.2.2/src/util/taskqueue.h Examining data/bagel-1.2.2/src/util/timer.h Examining data/bagel-1.2.2/src/util/unpack.h Examining data/bagel-1.2.2/src/util/vec.h Examining data/bagel-1.2.2/src/wfn/ciwfn.h Examining data/bagel-1.2.2/src/wfn/coeff.cc Examining data/bagel-1.2.2/src/wfn/coeff.h Examining data/bagel-1.2.2/src/wfn/contractmat.cc Examining data/bagel-1.2.2/src/wfn/contractmat.h Examining data/bagel-1.2.2/src/wfn/fmminfo.cc Examining data/bagel-1.2.2/src/wfn/fmminfo.h Examining data/bagel-1.2.2/src/wfn/geometry.cc Examining data/bagel-1.2.2/src/wfn/geometry.h Examining data/bagel-1.2.2/src/wfn/get_energy.cc Examining data/bagel-1.2.2/src/wfn/get_energy.h Examining data/bagel-1.2.2/src/wfn/hcoreinfo.cc Examining data/bagel-1.2.2/src/wfn/hcoreinfo.h Examining data/bagel-1.2.2/src/wfn/localization.cc Examining data/bagel-1.2.2/src/wfn/localization.h Examining data/bagel-1.2.2/src/wfn/method.h Examining data/bagel-1.2.2/src/wfn/rdm.cc Examining data/bagel-1.2.2/src/wfn/rdm.h Examining data/bagel-1.2.2/src/wfn/reference.cc Examining data/bagel-1.2.2/src/wfn/reference.h Examining data/bagel-1.2.2/src/wfn/relreference.cc Examining data/bagel-1.2.2/src/wfn/relreference.h Examining data/bagel-1.2.2/src/wfn/zcoeff.cc Examining data/bagel-1.2.2/src/wfn/zcoeff.h Examining data/bagel-1.2.2/src/wfn/zreference.cc Examining data/bagel-1.2.2/src/wfn/zreference.h FINAL RESULTS: data/bagel-1.2.2/btas/ordinal.h:212:42: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/btas/varray/varray.h:106:39: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/asd/dmrg/asd_dmrg.h:68:154: [4] (shell) system: This causes a new program to execute and is difficult to use safely (CWE-78). try using a library call that implements the same functionality if available. virtual std::shared_ptr<DMRG_Block1> decimate_block(std::shared_ptr<PTree> input, std::shared_ptr<const Reference> ref, std::shared_ptr<DMRG_Block1> system, std::shared_ptr<DMRG_Block1> environment, const int site) = 0; data/bagel-1.2.2/src/asd/dmrg/rasd.cc:317:128: [4] (shell) system: This causes a new program to execute and is difficult to use safely (CWE-78). try using a library call that implements the same functionality if available. shared_ptr<DMRG_Block1> RASD::decimate_block(shared_ptr<PTree> input, shared_ptr<const Reference> ref, shared_ptr<DMRG_Block1> system, shared_ptr<DMRG_Block1> environment, const int site) { data/bagel-1.2.2/src/asd/dmrg/rasd.cc:328:10: [4] (shell) system: This causes a new program to execute and is difficult to use safely (CWE-78). try using a library call that implements the same functionality if available. if (!system) { data/bagel-1.2.2/src/asd/dmrg/rasd.cc:360:50: [4] (shell) system: This causes a new program to execute and is difficult to use safely (CWE-78). try using a library call that implements the same functionality if available. auto block_pair = make_shared<DMRG_Block2>(system, environment); data/bagel-1.2.2/src/asd/dmrg/rasd.h:39:146: [4] (shell) system: This causes a new program to execute and is difficult to use safely (CWE-78). try using a library call that implements the same functionality if available. std::shared_ptr<DMRG_Block1> decimate_block(std::shared_ptr<PTree> input, std::shared_ptr<const Reference> ref, std::shared_ptr<DMRG_Block1> system, std::shared_ptr<DMRG_Block1> environment, const int site) override; data/bagel-1.2.2/src/ci/ciutil/ciblock.h:48:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/ci/ciutil/cistring.h:49:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/ci/ciutil/cistring.h:77:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/ci/ciutil/cistring.h:104:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/ci/ciutil/cistring.h:223:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/ci/ciutil/cistring.h:261:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/ci/ciutil/cistringmap.h:41:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/ci/ciutil/cistringmap.h:51:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/ci/ciutil/cistringmap.h:106:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/ci/ciutil/cistringset.h:61:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/ci/ciutil/cistringspace.h:102:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/ci/ciutil/determinants_base.h:64:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/ci/fci/civec.h:63:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/ci/fci/determinants.h:43:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/ci/fci/distfci.h:49:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/ci/fci/dvec.h:72:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/ci/fci/fci.h:43:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/ci/fci/harrison.h:53:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/ci/fci/knowles.h:53:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/ci/fci/space.h:41:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/ci/fci/space_base.h:38:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/ci/ras/ras_space.h:43:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/ci/zfci/fci_london.h:38:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/ci/zfci/reldvec.h:43:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/ci/zfci/relfci.h:42:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/ci/zfci/relspace.h:39:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/ci/zfci/zharrison.h:97:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/mat1e/fermicontact.h:41:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/mat1e/giao/zhcore.h:40:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/mat1e/giao/zkinetic.h:39:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/mat1e/giao/zoverlap.h:39:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/mat1e/hcore.h:42:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/mat1e/hso.h:40:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/mat1e/kinetic.h:39:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/mat1e/matrix1e.h:47:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/mat1e/nai.h:39:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/mat1e/overlap.h:39:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/mat1e/sohcore.h:43:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/mat1e/spindipole.h:42:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/molecule/atom.h:75:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/molecule/ecp.h:46:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/molecule/molecule.h:82:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/molecule/petite.h:52:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/molecule/shell.h:67:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/molecule/shell_base.h:42:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/molecule/shellecp.h:41:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/molecule/shellpair.h:50:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/molecule/soecp.h:43:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/opt/qmmm.cc:39:3: [4] (shell) system: This causes a new program to execute and is difficult to use safely (CWE-78). try using a library call that implements the same functionality if available. system("mv -f tinkin.xyz tinkin.xyz.old"); data/bagel-1.2.2/src/opt/qmmm.cc:77:5: [4] (shell) system: This causes a new program to execute and is difficult to use safely (CWE-78). try using a library call that implements the same functionality if available. system("testgrad -k tinkin.key tinkin.xyz y n n > gradientls"); data/bagel-1.2.2/src/opt/qmmm.cc:78:5: [4] (shell) system: This causes a new program to execute and is difficult to use safely (CWE-78). try using a library call that implements the same functionality if available. system("grep 'Total Potential' gradientls | cut -c 29- > ../energy_qmmm"); data/bagel-1.2.2/src/opt/qmmm.cc:82:5: [4] (shell) system: This causes a new program to execute and is difficult to use safely (CWE-78). try using a library call that implements the same functionality if available. system(pp.c_str()); data/bagel-1.2.2/src/opt/qmmm.cc:91:5: [4] (shell) system: This causes a new program to execute and is difficult to use safely (CWE-78). try using a library call that implements the same functionality if available. system("testgrad -k tinkin.key tinkin.xyz y n n > gradientls"); data/bagel-1.2.2/src/opt/qmmm.cc:92:5: [4] (shell) system: This causes a new program to execute and is difficult to use safely (CWE-78). try using a library call that implements the same functionality if available. system("grep 'Total Potential' gradientls | cut -c 29- > ../energy_qm"); data/bagel-1.2.2/src/opt/qmmm.cc:96:5: [4] (shell) system: This causes a new program to execute and is difficult to use safely (CWE-78). try using a library call that implements the same functionality if available. system(pp.c_str()); data/bagel-1.2.2/src/scf/fmm/fmm.h:65:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/scf/giaohf/fock_london.h:47:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/scf/giaohf/rhf_london.h:49:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/scf/hf/fock.h:48:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/scf/hf/fock_base.h:52:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/scf/hf/rhf.h:48:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/scf/hf/uhf.h:51:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/scf/scf_base.h:85:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/scf/sohf/sofock.h:45:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/scf/sohf/soscf.h:47:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/smith/indexrange.h:52:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/smith/indexrange.h:91:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/smith/multitensor.h:48:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/smith/smith_info.h:77:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/smith/storage.h:109:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/smith/storagekramers.h:139:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/smith/tensor.h:73:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/util/input/input.h:90:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/util/kramers.h:47:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/util/kramers.h:112:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/util/math/btas_varray.h:106:39: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/util/math/csymmatrix.h:42:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/util/math/davidson.h:51:44: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/util/math/davidson.h:73:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/util/math/diis.h:54:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/util/math/matrix.h:47:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/util/math/matrix.h:159:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/util/math/matrix_base.h:67:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/util/math/vectorb.h:104:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/util/math/zmatrix.h:44:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/util/math/zmatrix.h:161:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/util/vec.h:41:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/wfn/ciwfn.h:53:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/wfn/coeff.h:41:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/wfn/fmminfo.h:40:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/wfn/geometry.h:74:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/wfn/hcoreinfo.h:48:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/wfn/method.h:43:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/wfn/rdm.h:49:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/wfn/reference.h:79:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/wfn/relreference.h:49:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/wfn/zcoeff.h:58:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/wfn/zcoeff.h:92:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/wfn/zcoeff.h:129:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/wfn/zcoeff.h:165:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/wfn/zreference.h:40:40: [4] (race) access: This usually indicates a security flaw. If an attacker can change anything along the path between the call to access() and the file's actual use (e.g., by moving files), the attacker can exploit the race condition (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid()) and try to open the file directly. friend class boost::serialization::access; data/bagel-1.2.2/src/global.h:58:26: [3] (buffer) getenv: Environment variables are untrustable input if they can be set by an attacker. They can have any content and length, and the same variable can be set more than once (CWE-807, CWE-20). Check environment variables carefully before using them. char const* val = std::getenv(head); data/bagel-1.2.2/src/global.h:65:26: [3] (buffer) getenv: Environment variables are untrustable input if they can be set by an attacker. They can have any content and length, and the same variable can be set more than once (CWE-807, CWE-20). Check environment variables carefully before using them. char const* val = std::getenv(head); data/bagel-1.2.2/src/integral/carsph_gen/mpreal.h:417:25: [3] (random) random: This function is not sufficiently random for security-related functions such as key and nonce creation (CWE-327). Use a more secure technique for acquiring random values. friend const mpreal random(unsigned int seed = 0); data/bagel-1.2.2/src/integral/carsph_gen/mpreal.h:2823:21: [3] (random) random: This function is not sufficiently random for security-related functions such as key and nonce creation (CWE-327). Use a more secure technique for acquiring random values. inline const mpreal random(unsigned int seed) data/bagel-1.2.2/src/integral/carsph_gen/mpreal.h:2841:27: [3] (random) srand: This function is not sufficiently random for security-related functions such as key and nonce creation (CWE-327). Use a more secure technique for acquiring random values. if(seed != 0) std::srand(seed); data/bagel-1.2.2/src/integral/comprys/interpolate/complex_main.cc:67:19: [3] (random) random: This function is not sufficiently random for security-related functions such as key and nonce creation (CWE-327). Use a more secure technique for acquiring random values. complex<double> random (realdouble, imagdouble); data/bagel-1.2.2/src/integral/comprys/interpolate/complex_main.cc:68:10: [3] (random) random: This function is not sufficiently random for security-related functions such as key and nonce creation (CWE-327). Use a more secure technique for acquiring random values. return random; data/bagel-1.2.2/src/integral/comprys/interpolate/complex_main.cc:280:7: [3] (random) srand: This function is not sufficiently random for security-related functions such as key and nonce creation (CWE-327). Use a more secure technique for acquiring random values. srand (seed); data/bagel-1.2.2/src/integral/comprys/interpolate/complex_rys_gmp.cc:134:19: [3] (random) random: This function is not sufficiently random for security-related functions such as key and nonce creation (CWE-327). Use a more secure technique for acquiring random values. complex<mpreal> random (realdouble, imagdouble); data/bagel-1.2.2/src/integral/comprys/interpolate/complex_rys_gmp.cc:135:10: [3] (random) random: This function is not sufficiently random for security-related functions such as key and nonce creation (CWE-327). Use a more secure technique for acquiring random values. return random; data/bagel-1.2.2/src/integral/comprys/interpolate/complex_rys_gmp.cc:153:19: [3] (random) random: This function is not sufficiently random for security-related functions such as key and nonce creation (CWE-327). Use a more secure technique for acquiring random values. complex<mpreal> random (realdouble, imagdouble); data/bagel-1.2.2/src/integral/comprys/interpolate/complex_rys_gmp.cc:154:10: [3] (random) random: This function is not sufficiently random for security-related functions such as key and nonce creation (CWE-327). Use a more secure technique for acquiring random values. return random; data/bagel-1.2.2/src/integral/comprys/interpolate/complex_rys_gmp.cc:601:7: [3] (random) srand: This function is not sufficiently random for security-related functions such as key and nonce creation (CWE-327). Use a more secure technique for acquiring random values. srand (time(NULL)); data/bagel-1.2.2/src/integral/comprys/interpolate/complex_rys_gmp.cc:694:7: [3] (random) srand: This function is not sufficiently random for security-related functions such as key and nonce creation (CWE-327). Use a more secure technique for acquiring random values. srand (time(NULL)); data/bagel-1.2.2/src/integral/comprys/interpolate/mpreal.h:417:25: [3] (random) random: This function is not sufficiently random for security-related functions such as key and nonce creation (CWE-327). Use a more secure technique for acquiring random values. friend const mpreal random(unsigned int seed = 0); data/bagel-1.2.2/src/integral/comprys/interpolate/mpreal.h:2823:21: [3] (random) random: This function is not sufficiently random for security-related functions such as key and nonce creation (CWE-327). Use a more secure technique for acquiring random values. inline const mpreal random(unsigned int seed) data/bagel-1.2.2/src/integral/comprys/interpolate/mpreal.h:2841:27: [3] (random) srand: This function is not sufficiently random for security-related functions such as key and nonce creation (CWE-327). Use a more secure technique for acquiring random values. if(seed != 0) std::srand(seed); data/bagel-1.2.2/src/integral/ecp/testcode/ang_proj/mpreal.h:417:25: [3] (random) random: This function is not sufficiently random for security-related functions such as key and nonce creation (CWE-327). Use a more secure technique for acquiring random values. friend const mpreal random(unsigned int seed = 0); data/bagel-1.2.2/src/integral/ecp/testcode/ang_proj/mpreal.h:2823:21: [3] (random) random: This function is not sufficiently random for security-related functions such as key and nonce creation (CWE-327). Use a more secure technique for acquiring random values. inline const mpreal random(unsigned int seed) data/bagel-1.2.2/src/integral/ecp/testcode/ang_proj/mpreal.h:2841:27: [3] (random) srand: This function is not sufficiently random for security-related functions such as key and nonce creation (CWE-327). Use a more secure technique for acquiring random values. if(seed != 0) std::srand(seed); data/bagel-1.2.2/src/integral/ecp/wigner3j_gen/mpreal.h:417:25: [3] (random) random: This function is not sufficiently random for security-related functions such as key and nonce creation (CWE-327). Use a more secure technique for acquiring random values. friend const mpreal random(unsigned int seed = 0); data/bagel-1.2.2/src/integral/ecp/wigner3j_gen/mpreal.h:2823:21: [3] (random) random: This function is not sufficiently random for security-related functions such as key and nonce creation (CWE-327). Use a more secure technique for acquiring random values. inline const mpreal random(unsigned int seed) data/bagel-1.2.2/src/integral/ecp/wigner3j_gen/mpreal.h:2841:27: [3] (random) srand: This function is not sufficiently random for security-related functions such as key and nonce creation (CWE-327). Use a more secure technique for acquiring random values. if(seed != 0) std::srand(seed); data/bagel-1.2.2/src/integral/rys/interpolate/mpreal.h:417:25: [3] (random) random: This function is not sufficiently random for security-related functions such as key and nonce creation (CWE-327). Use a more secure technique for acquiring random values. friend const mpreal random(unsigned int seed = 0); data/bagel-1.2.2/src/integral/rys/interpolate/mpreal.h:2823:21: [3] (random) random: This function is not sufficiently random for security-related functions such as key and nonce creation (CWE-327). Use a more secure technique for acquiring random values. inline const mpreal random(unsigned int seed) data/bagel-1.2.2/src/integral/rys/interpolate/mpreal.h:2841:27: [3] (random) srand: This function is not sufficiently random for security-related functions such as key and nonce creation (CWE-327). Use a more secure technique for acquiring random values. if(seed != 0) std::srand(seed); data/bagel-1.2.2/src/ci/fci/determinants.cc:119:22: [2] (misc) open: Check when opening files - can an attacker redirect it (via symlinks), force the opening of special file type (e.g., device files), move things around to create a race condition, control its ancestors, or change its contents? (CWE-362). assert(nalpha*2 == open.size()); data/bagel-1.2.2/src/ci/fci/determinants.cc:124:48: [2] (misc) open: Check when opening files - can an attacker redirect it (via symlinks), force the opening of special file type (e.g., device files), move things around to create a race condition, control its ancestors, or change its contents? (CWE-362). for (int i =0; i!=nalpha; ++i) ialpha.flip(open[i]); data/bagel-1.2.2/src/ci/fci/determinants.cc:125:27: [2] (misc) open: Check when opening files - can an attacker redirect it (via symlinks), force the opening of special file type (e.g., device files), move things around to create a race condition, control its ancestors, or change its contents? (CWE-362). for (int i=nalpha; i!=open.size(); ++i) ibeta.flip(open[i]); data/bagel-1.2.2/src/ci/fci/determinants.cc:125:56: [2] (misc) open: Check when opening files - can an attacker redirect it (via symlinks), force the opening of special file type (e.g., device files), move things around to create a race condition, control its ancestors, or change its contents? (CWE-362). for (int i=nalpha; i!=open.size(); ++i) ibeta.flip(open[i]); data/bagel-1.2.2/src/ci/fci/determinants.cc:137:36: [2] (misc) open: Check when opening files - can an attacker redirect it (via symlinks), force the opening of special file type (e.g., device files), move things around to create a race condition, control its ancestors, or change its contents? (CWE-362). } while (boost::next_combination(open.begin(), open.begin()+nalpha, open.end())); data/bagel-1.2.2/src/ci/fci/determinants.cc:137:50: [2] (misc) open: Check when opening files - can an attacker redirect it (via symlinks), force the opening of special file type (e.g., device files), move things around to create a race condition, control its ancestors, or change its contents? (CWE-362). } while (boost::next_combination(open.begin(), open.begin()+nalpha, open.end())); data/bagel-1.2.2/src/ci/fci/determinants.cc:137:71: [2] (misc) open: Check when opening files - can an attacker redirect it (via symlinks), force the opening of special file type (e.g., device files), move things around to create a race condition, control its ancestors, or change its contents? (CWE-362). } while (boost::next_combination(open.begin(), open.begin()+nalpha, open.end())); data/bagel-1.2.2/src/ci/ras/determinants.cc:148:22: [2] (misc) open: Check when opening files - can an attacker redirect it (via symlinks), force the opening of special file type (e.g., device files), move things around to create a race condition, control its ancestors, or change its contents? (CWE-362). assert(nalpha*2 == open.size()); data/bagel-1.2.2/src/ci/ras/determinants.cc:153:48: [2] (misc) open: Check when opening files - can an attacker redirect it (via symlinks), force the opening of special file type (e.g., device files), move things around to create a race condition, control its ancestors, or change its contents? (CWE-362). for (int i =0; i!=nalpha; ++i) ialpha.flip(open[i]); data/bagel-1.2.2/src/ci/ras/determinants.cc:154:27: [2] (misc) open: Check when opening files - can an attacker redirect it (via symlinks), force the opening of special file type (e.g., device files), move things around to create a race condition, control its ancestors, or change its contents? (CWE-362). for (int i=nalpha; i!=open.size(); ++i) ibeta.flip(open[i]); data/bagel-1.2.2/src/ci/ras/determinants.cc:154:56: [2] (misc) open: Check when opening files - can an attacker redirect it (via symlinks), force the opening of special file type (e.g., device files), move things around to create a race condition, control its ancestors, or change its contents? (CWE-362). for (int i=nalpha; i!=open.size(); ++i) ibeta.flip(open[i]); data/bagel-1.2.2/src/ci/ras/determinants.cc:162:36: [2] (misc) open: Check when opening files - can an attacker redirect it (via symlinks), force the opening of special file type (e.g., device files), move things around to create a race condition, control its ancestors, or change its contents? (CWE-362). } while (boost::next_combination(open.begin(), open.begin()+nalpha, open.end())); data/bagel-1.2.2/src/ci/ras/determinants.cc:162:50: [2] (misc) open: Check when opening files - can an attacker redirect it (via symlinks), force the opening of special file type (e.g., device files), move things around to create a race condition, control its ancestors, or change its contents? (CWE-362). } while (boost::next_combination(open.begin(), open.begin()+nalpha, open.end())); data/bagel-1.2.2/src/ci/ras/determinants.cc:162:71: [2] (misc) open: Check when opening files - can an attacker redirect it (via symlinks), force the opening of special file type (e.g., device files), move things around to create a race condition, control its ancestors, or change its contents? (CWE-362). } while (boost::next_combination(open.begin(), open.begin()+nalpha, open.end())); data/bagel-1.2.2/src/integral/carsph_gen/carsph_gen.cc:245:9: [2] (misc) open: Check when opening files - can an attacker redirect it (via symlinks), force the opening of special file type (e.g., device files), move things around to create a race condition, control its ancestors, or change its contents? (CWE-362). ofs.open(filename.c_str()); data/bagel-1.2.2/src/integral/carsph_gen/mpreal.h:1655:5: [2] (buffer) char: Statically-sized arrays can be improperly restricted, leading to potential overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use functions that limit length, or ensure that the size is larger than the maximum possible length. char format[128]; data/bagel-1.2.2/src/integral/carsph_gen/mpreal.h:1660:5: [2] (buffer) sprintf: Does not check for buffer overflows (CWE-120). Use sprintf_s, snprintf, or vsnprintf. Risk is low because the source has a constant maximum length. sprintf(format,"%%.%dRNg",digits); // Default format data/bagel-1.2.2/src/integral/comprys/interpolate/complex_main.cc:545:9: [2] (misc) open: Check when opening files - can an attacker redirect it (via symlinks), force the opening of special file type (e.g., device files), move things around to create a race condition, control its ancestors, or change its contents? (CWE-362). ofs.open(("../" + filename).c_str()); data/bagel-1.2.2/src/integral/comprys/interpolate/mpreal.h:1655:5: [2] (buffer) char: Statically-sized arrays can be improperly restricted, leading to potential overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use functions that limit length, or ensure that the size is larger than the maximum possible length. char format[128]; data/bagel-1.2.2/src/integral/comprys/interpolate/mpreal.h:1660:5: [2] (buffer) sprintf: Does not check for buffer overflows (CWE-120). Use sprintf_s, snprintf, or vsnprintf. Risk is low because the source has a constant maximum length. sprintf(format,"%%.%dRNg",digits); // Default format data/bagel-1.2.2/src/integral/ecp/carsph/carsph_tab.cc:189:9: [2] (misc) open: Check when opening files - can an attacker redirect it (via symlinks), force the opening of special file type (e.g., device files), move things around to create a race condition, control its ancestors, or change its contents? (CWE-362). ofs.open(filename.c_str()); data/bagel-1.2.2/src/integral/ecp/sphusp_gen/sphusp_gen.cc:62:7: [2] (misc) open: Check when opening files - can an attacker redirect it (via symlinks), force the opening of special file type (e.g., device files), move things around to create a race condition, control its ancestors, or change its contents? (CWE-362). ofs.open(filename.c_str()); data/bagel-1.2.2/src/integral/ecp/testcode/ang_proj/mpreal.h:1655:5: [2] (buffer) char: Statically-sized arrays can be improperly restricted, leading to potential overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use functions that limit length, or ensure that the size is larger than the maximum possible length. char format[128]; data/bagel-1.2.2/src/integral/ecp/testcode/ang_proj/mpreal.h:1660:5: [2] (buffer) sprintf: Does not check for buffer overflows (CWE-120). Use sprintf_s, snprintf, or vsnprintf. Risk is low because the source has a constant maximum length. sprintf(format,"%%.%dRNg",digits); // Default format data/bagel-1.2.2/src/integral/ecp/wigner3j_gen/mpreal.h:1655:5: [2] (buffer) char: Statically-sized arrays can be improperly restricted, leading to potential overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use functions that limit length, or ensure that the size is larger than the maximum possible length. char format[128]; data/bagel-1.2.2/src/integral/ecp/wigner3j_gen/mpreal.h:1660:5: [2] (buffer) sprintf: Does not check for buffer overflows (CWE-120). Use sprintf_s, snprintf, or vsnprintf. Risk is low because the source has a constant maximum length. sprintf(format,"%%.%dRNg",digits); // Default format data/bagel-1.2.2/src/integral/ecp/wigner3j_gen/wigner3j_gen.cc:110:7: [2] (misc) open: Check when opening files - can an attacker redirect it (via symlinks), force the opening of special file type (e.g., device files), move things around to create a race condition, control its ancestors, or change its contents? (CWE-362). ofs.open(filename.c_str()); data/bagel-1.2.2/src/integral/hrr_gen/main.cc:251:11: [2] (misc) open: Check when opening files - can an attacker redirect it (via symlinks), force the opening of special file type (e.g., device files), move things around to create a race condition, control its ancestors, or change its contents? (CWE-362). ofs.open(filename.c_str()); data/bagel-1.2.2/src/integral/rys/interpolate/main.cc:335:9: [2] (misc) open: Check when opening files - can an attacker redirect it (via symlinks), force the opening of special file type (e.g., device files), move things around to create a race condition, control its ancestors, or change its contents? (CWE-362). ofs.open(filename.c_str()); data/bagel-1.2.2/src/integral/rys/interpolate/mpreal.h:1655:5: [2] (buffer) char: Statically-sized arrays can be improperly restricted, leading to potential overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use functions that limit length, or ensure that the size is larger than the maximum possible length. char format[128]; data/bagel-1.2.2/src/integral/rys/interpolate/mpreal.h:1660:5: [2] (buffer) sprintf: Does not check for buffer overflows (CWE-120). Use sprintf_s, snprintf, or vsnprintf. Risk is low because the source has a constant maximum length. sprintf(format,"%%.%dRNg",digits); // Default format data/bagel-1.2.2/src/integral/sort_gen/cmain.cc:32:7: [2] (misc) open: Check when opening files - can an attacker redirect it (via symlinks), force the opening of special file type (e.g., device files), move things around to create a race condition, control its ancestors, or change its contents? (CWE-362). ofs.open(filename.c_str()); data/bagel-1.2.2/src/integral/sort_gen/main.cc:32:7: [2] (misc) open: Check when opening files - can an attacker redirect it (via symlinks), force the opening of special file type (e.g., device files), move things around to create a race condition, control its ancestors, or change its contents? (CWE-362). ofs.open(filename.c_str()); data/bagel-1.2.2/src/util/parallel/mpi_interface.cc:64:5: [2] (buffer) char: Statically-sized arrays can be improperly restricted, leading to potential overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use functions that limit length, or ensure that the size is larger than the maximum possible length. char name[maxlen]; data/bagel-1.2.2/btas/generic/contract.h:122:16: [1] (buffer) equal: Function does not check the second iterator for over-read conditions (CWE-126). This function is often discouraged by most C++ coding standards in favor of its safer alternatives provided since C++14. Consider using a form of this function that checks the second iterator before potentially overflowing it. assert(std::equal(std::begin(__sort_permute_indexC), std::end(__sort_permute_indexC), std::begin(__sort_indexC))); data/bagel-1.2.2/btas/generic/contract.h:127:13: [1] (buffer) equal: Function does not check the second iterator for over-read conditions (CWE-126). This function is often discouraged by most C++ coding standards in favor of its safer alternatives provided since C++14. Consider using a form of this function that checks the second iterator before potentially overflowing it. if(!std::equal(std::begin(aA), std::end(aA), std::begin(__permute_indexA))) data/bagel-1.2.2/btas/generic/contract.h:136:13: [1] (buffer) equal: Function does not check the second iterator for over-read conditions (CWE-126). This function is often discouraged by most C++ coding standards in favor of its safer alternatives provided since C++14. Consider using a form of this function that checks the second iterator before potentially overflowing it. if(!std::equal(std::begin(aB), std::end(aB), std::begin(__permute_indexB))) data/bagel-1.2.2/btas/generic/contract.h:156:13: [1] (buffer) equal: Function does not check the second iterator for over-read conditions (CWE-126). This function is often discouraged by most C++ coding standards in favor of its safer alternatives provided since C++14. Consider using a form of this function that checks the second iterator before potentially overflowing it. if(!std::equal(std::begin(aC), std::end(aC), std::begin(__permute_indexC))) data/bagel-1.2.2/btas/generic/gemm_impl.h:569:20: [1] (buffer) equal: Function does not check the second iterator for over-read conditions (CWE-126). This function is often discouraged by most C++ coding standards in favor of its safer alternatives provided since C++14. Consider using a form of this function that checks the second iterator before potentially overflowing it. assert(std::equal(std::begin(extentA)+M, std::end(extentA), std::begin(extentB))); data/bagel-1.2.2/btas/generic/gemm_impl.h:571:20: [1] (buffer) equal: Function does not check the second iterator for over-read conditions (CWE-126). This function is often discouraged by most C++ coding standards in favor of its safer alternatives provided since C++14. Consider using a form of this function that checks the second iterator before potentially overflowing it. assert(std::equal(std::begin(extentA)+M, std::end(extentA), std::begin(extentB)+N)); data/bagel-1.2.2/btas/generic/gemm_impl.h:573:20: [1] (buffer) equal: Function does not check the second iterator for over-read conditions (CWE-126). This function is often discouraged by most C++ coding standards in favor of its safer alternatives provided since C++14. Consider using a form of this function that checks the second iterator before potentially overflowing it. assert(std::equal(std::begin(extentA), std::begin(extentA)+K, std::begin(extentB))); data/bagel-1.2.2/btas/generic/gemm_impl.h:575:20: [1] (buffer) equal: Function does not check the second iterator for over-read conditions (CWE-126). This function is often discouraged by most C++ coding standards in favor of its safer alternatives provided since C++14. Consider using a form of this function that checks the second iterator before potentially overflowing it. assert(std::equal(std::begin(extentA), std::begin(extentA)+K, std::begin(extentB)+N)); data/bagel-1.2.2/btas/generic/gemm_impl.h:610:20: [1] (buffer) equal: Function does not check the second iterator for over-read conditions (CWE-126). This function is often discouraged by most C++ coding standards in favor of its safer alternatives provided since C++14. Consider using a form of this function that checks the second iterator before potentially overflowing it. assert(std::equal(std::begin(extentA), std::begin(extentA)+M, std::begin(extentC))); data/bagel-1.2.2/btas/generic/gemm_impl.h:612:20: [1] (buffer) equal: Function does not check the second iterator for over-read conditions (CWE-126). This function is often discouraged by most C++ coding standards in favor of its safer alternatives provided since C++14. Consider using a form of this function that checks the second iterator before potentially overflowing it. assert(std::equal(std::begin(extentA)+K, std::end(extentA), std::begin(extentC))); data/bagel-1.2.2/btas/generic/gemm_impl.h:614:20: [1] (buffer) equal: Function does not check the second iterator for over-read conditions (CWE-126). This function is often discouraged by most C++ coding standards in favor of its safer alternatives provided since C++14. Consider using a form of this function that checks the second iterator before potentially overflowing it. assert(std::equal(std::begin(extentB)+K, std::end(extentB), std::begin(extentC)+M)); data/bagel-1.2.2/btas/generic/gemm_impl.h:616:20: [1] (buffer) equal: Function does not check the second iterator for over-read conditions (CWE-126). This function is often discouraged by most C++ coding standards in favor of its safer alternatives provided since C++14. Consider using a form of this function that checks the second iterator before potentially overflowing it. assert(std::equal(std::begin(extentB), std::begin(extentB)+N, std::begin(extentC)+M)); data/bagel-1.2.2/btas/generic/gemm_impl.h:627:19: [1] (buffer) equal: Function does not check the second iterator for over-read conditions (CWE-126). This function is often discouraged by most C++ coding standards in favor of its safer alternatives provided since C++14. Consider using a form of this function that checks the second iterator before potentially overflowing it. assert(std::equal(std::begin(extentC), std::end(extentC), std::begin(extent(C)))); data/bagel-1.2.2/btas/generic/gemv_impl.h:393:19: [1] (buffer) equal: Function does not check the second iterator for over-read conditions (CWE-126). This function is often discouraged by most C++ coding standards in favor of its safer alternatives provided since C++14. Consider using a form of this function that checks the second iterator before potentially overflowing it. assert(std::equal(std::begin(extentA)+rankY, std::end(extentA), std::begin(extentX))); data/bagel-1.2.2/btas/generic/gemv_impl.h:402:19: [1] (buffer) equal: Function does not check the second iterator for over-read conditions (CWE-126). This function is often discouraged by most C++ coding standards in favor of its safer alternatives provided since C++14. Consider using a form of this function that checks the second iterator before potentially overflowing it. assert(std::equal(std::begin(extentA), std::begin(extentA)+rankX, std::begin(extentX))); data/bagel-1.2.2/btas/generic/gemv_impl.h:425:19: [1] (buffer) equal: Function does not check the second iterator for over-read conditions (CWE-126). This function is often discouraged by most C++ coding standards in favor of its safer alternatives provided since C++14. Consider using a form of this function that checks the second iterator before potentially overflowing it. assert(std::equal(std::begin(extentY), std::end(extentY), std::begin(extent(Y)))); data/bagel-1.2.2/btas/generic/ger_impl.h:282:19: [1] (buffer) equal: Function does not check the second iterator for over-read conditions (CWE-126). This function is often discouraged by most C++ coding standards in favor of its safer alternatives provided since C++14. Consider using a form of this function that checks the second iterator before potentially overflowing it. assert(std::equal(std::begin(extentA), std::end(extentA), std::begin(extent(A)))); data/bagel-1.2.2/btas/generic/permute.h:64:13: [1] (buffer) equal: Function does not check the second iterator for over-read conditions (CWE-126). This function is often discouraged by most C++ coding standards in favor of its safer alternatives provided since C++14. Consider using a form of this function that checks the second iterator before potentially overflowing it. if (std::equal(std::begin(aX), std::end(aX), std::begin(aY))) data/bagel-1.2.2/btas/generic/permute.h:83:19: [1] (buffer) equal: Function does not check the second iterator for over-read conditions (CWE-126). This function is often discouraged by most C++ coding standards in favor of its safer alternatives provided since C++14. Consider using a form of this function that checks the second iterator before potentially overflowing it. assert(std::equal(std::begin(aX_sorted), std::end(aX_sorted), std::begin(aY_sorted))); data/bagel-1.2.2/btas/range.h:1087:21: [1] (buffer) equal: Function does not check the second iterator for over-read conditions (CWE-126). This function is often discouraged by most C++ coding standards in favor of its safer alternatives provided since C++14. Consider using a form of this function that checks the second iterator before potentially overflowing it. return std::equal(std::cbegin(r1_extent), std::cend(r1_extent), data/bagel-1.2.2/btas/range.h:1090:21: [1] (buffer) equal: Function does not check the second iterator for over-read conditions (CWE-126). This function is often discouraged by most C++ coding standards in favor of its safer alternatives provided since C++14. Consider using a form of this function that checks the second iterator before potentially overflowing it. return std::equal(std::cbegin(r1_extent), std::cend(r1_extent), data/bagel-1.2.2/btas/tensor.h:568:22: [1] (buffer) equal: Function does not check the second iterator for over-read conditions (CWE-126). This function is often discouraged by most C++ coding standards in favor of its safer alternatives provided since C++14. Consider using a form of this function that checks the second iterator before potentially overflowing it. assert( std::equal(range_.begin(), range_.end(), x.range_.begin()) ); data/bagel-1.2.2/btas/tensor.h:586:18: [1] (buffer) equal: Function does not check the second iterator for over-read conditions (CWE-126). This function is often discouraged by most C++ coding standards in favor of its safer alternatives provided since C++14. Consider using a form of this function that checks the second iterator before potentially overflowing it. std::equal(range_.begin(), range_.end(), x.range_.begin())); data/bagel-1.2.2/btas/tensor.h:688:58: [1] (buffer) equal: Function does not check the second iterator for over-read conditions (CWE-126). This function is often discouraged by most C++ coding standards in favor of its safer alternatives provided since C++14. Consider using a form of this function that checks the second iterator before potentially overflowing it. return congruent(t1.range(), t2.range()) && std::equal(std::cbegin(t1.storage()), data/bagel-1.2.2/btas/tensor.h:699:21: [1] (buffer) equal: Function does not check the second iterator for over-read conditions (CWE-126). This function is often discouraged by most C++ coding standards in favor of its safer alternatives provided since C++14. Consider using a form of this function that checks the second iterator before potentially overflowing it. return std::equal(vt1.cbegin(), vt1.cend(), vt2.cbegin()); data/bagel-1.2.2/btas/tensorview.h:469:22: [1] (buffer) equal: Function does not check the second iterator for over-read conditions (CWE-126). This function is often discouraged by most C++ coding standards in favor of its safer alternatives provided since C++14. Consider using a form of this function that checks the second iterator before potentially overflowing it. assert( std::equal(range_.begin(), range_.end(), x.range_.begin()) ); data/bagel-1.2.2/btas/tensorview.h:487:18: [1] (buffer) equal: Function does not check the second iterator for over-read conditions (CWE-126). This function is often discouraged by most C++ coding standards in favor of its safer alternatives provided since C++14. Consider using a form of this function that checks the second iterator before potentially overflowing it. std::equal(range_.begin(), range_.end(), x.range_.begin())); data/bagel-1.2.2/btas/varray/varray.h:385:15: [1] (buffer) equal: Function does not check the second iterator for over-read conditions (CWE-126). This function is often discouraged by most C++ coding standards in favor of its safer alternatives provided since C++14. Consider using a form of this function that checks the second iterator before potentially overflowing it. return std::equal(a.begin(), a.end(), b.begin()); data/bagel-1.2.2/btas/varray/varray.h:429:15: [1] (buffer) equal: Function does not check the second iterator for over-read conditions (CWE-126). This function is often discouraged by most C++ coding standards in favor of its safer alternatives provided since C++14. Consider using a form of this function that checks the second iterator before potentially overflowing it. return std::equal(a.begin(), a.end(), b.begin()); data/bagel-1.2.2/src/asd/dmrg/rasd.cc:61:5: [1] (buffer) read: Check buffer boundaries if used in a loop including recursive loops (CWE-120, CWE-20). read(*restricted->begin(), input->get<int>("nclosed")); data/bagel-1.2.2/src/asd/dmrg/rasd.cc:65:5: [1] (buffer) read: Check buffer boundaries if used in a loop including recursive loops (CWE-120, CWE-20). read(*iter, input->get<int>("nclosed")); data/bagel-1.2.2/src/integral/carsph_gen/mpreal.h:1685:17: [1] (buffer) strlen: Does not handle strings that are not \0-terminated; if given one it may perform an over-read (it could cause a crash if unprotected) (CWE-126). slen = strlen(s); data/bagel-1.2.2/src/integral/carsph_gen/mpreal.h:1686:17: [1] (buffer) strlen: Does not handle strings that are not \0-terminated; if given one it may perform an over-read (it could cause a crash if unprotected) (CWE-126). nslen = strlen(ns); data/bagel-1.2.2/src/integral/comprys/interpolate/mpreal.h:1685:17: [1] (buffer) strlen: Does not handle strings that are not \0-terminated; if given one it may perform an over-read (it could cause a crash if unprotected) (CWE-126). slen = strlen(s); data/bagel-1.2.2/src/integral/comprys/interpolate/mpreal.h:1686:17: [1] (buffer) strlen: Does not handle strings that are not \0-terminated; if given one it may perform an over-read (it could cause a crash if unprotected) (CWE-126). nslen = strlen(ns); data/bagel-1.2.2/src/integral/ecp/testcode/ang_proj/mpreal.h:1685:17: [1] (buffer) strlen: Does not handle strings that are not \0-terminated; if given one it may perform an over-read (it could cause a crash if unprotected) (CWE-126). slen = strlen(s); data/bagel-1.2.2/src/integral/ecp/testcode/ang_proj/mpreal.h:1686:17: [1] (buffer) strlen: Does not handle strings that are not \0-terminated; if given one it may perform an over-read (it could cause a crash if unprotected) (CWE-126). nslen = strlen(ns); data/bagel-1.2.2/src/integral/ecp/wigner3j_gen/mpreal.h:1685:17: [1] (buffer) strlen: Does not handle strings that are not \0-terminated; if given one it may perform an over-read (it could cause a crash if unprotected) (CWE-126). slen = strlen(s); data/bagel-1.2.2/src/integral/ecp/wigner3j_gen/mpreal.h:1686:17: [1] (buffer) strlen: Does not handle strings that are not \0-terminated; if given one it may perform an over-read (it could cause a crash if unprotected) (CWE-126). nslen = strlen(ns); data/bagel-1.2.2/src/integral/rys/interpolate/mpreal.h:1685:17: [1] (buffer) strlen: Does not handle strings that are not \0-terminated; if given one it may perform an over-read (it could cause a crash if unprotected) (CWE-126). slen = strlen(s); data/bagel-1.2.2/src/integral/rys/interpolate/mpreal.h:1686:17: [1] (buffer) strlen: Does not handle strings that are not \0-terminated; if given one it may perform an over-read (it could cause a crash if unprotected) (CWE-126). nslen = strlen(ns); data/bagel-1.2.2/src/testimpl/test_molden.cc:82:9: [1] (buffer) read: Check buffer boundaries if used in a loop including recursive loops (CWE-120, CWE-20). mfs.read(); data/bagel-1.2.2/src/util/io/moldenin.cc:111:16: [1] (buffer) read: Check buffer boundaries if used in a loop including recursive loops (CWE-120, CWE-20). void MoldenIn::read() { data/bagel-1.2.2/src/util/io/moldenin.h:53:10: [1] (buffer) read: Check buffer boundaries if used in a loop including recursive loops (CWE-120, CWE-20). void read(); data/bagel-1.2.2/src/util/math/btas_varray.h:398:15: [1] (buffer) equal: Function does not check the second iterator for over-read conditions (CWE-126). This function is often discouraged by most C++ coding standards in favor of its safer alternatives provided since C++14. Consider using a form of this function that checks the second iterator before potentially overflowing it. return std::equal(a.begin(), a.end(), b.begin()); data/bagel-1.2.2/src/util/math/btas_varray.h:442:15: [1] (buffer) equal: Function does not check the second iterator for over-read conditions (CWE-126). This function is often discouraged by most C++ coding standards in favor of its safer alternatives provided since C++14. Consider using a form of this function that checks the second iterator before potentially overflowing it. return std::equal(a.begin(), a.end(), b.begin()); data/bagel-1.2.2/src/wfn/geometry.cc:96:9: [1] (buffer) read: Check buffer boundaries if used in a loop including recursive loops (CWE-120, CWE-20). mfs.read(); data/bagel-1.2.2/src/wfn/geometry.cc:340:11: [1] (buffer) equal: Function does not check the second iterator for over-read conditions (CWE-126). This function is often discouraged by most C++ coding standards in favor of its safer alternatives provided since C++14. Consider using a form of this function that checks the second iterator before potentially overflowing it. if (!(equal(external_.begin(), external_.end(), inmer->external_.begin()))) { data/bagel-1.2.2/src/wfn/reference.cc:76:7: [1] (buffer) read: Check buffer boundaries if used in a loop including recursive loops (CWE-120, CWE-20). mfs.read(); ANALYSIS SUMMARY: Hits = 217 Lines analyzed = 1357999 in approximately 111.24 seconds (12208 lines/second) Physical Source Lines of Code (SLOC) = 1246646 Hits@level = [0] 3 [1] 49 [2] 34 [3] 26 [4] 108 [5] 0 Hits@level+ = [0+] 220 [1+] 217 [2+] 168 [3+] 134 [4+] 108 [5+] 0 Hits/KSLOC@level+ = [0+] 0.176474 [1+] 0.174067 [2+] 0.134762 [3+] 0.107488 [4+] 0.0866325 [5+] 0 Dot directories skipped = 1 (--followdotdir overrides) Minimum risk level = 1 Not every hit is necessarily a security vulnerability. There may be other security vulnerabilities; review your code! See 'Secure Programming HOWTO' (https://dwheeler.com/secure-programs) for more information.