Flawfinder version 2.0.10, (C) 2001-2019 David A. Wheeler.
Number of rules (primarily dangerous function names) in C/C++ ruleset: 223
Examining data/gbrowse-2.56+dfsg/libalign/realign.h

FINAL RESULTS:

data/gbrowse-2.56+dfsg/libalign/realign.h:19:10:  [1] (buffer) mismatch:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
  short  mismatch;

ANALYSIS SUMMARY:

Hits = 1
Lines analyzed = 38 in approximately 0.09 seconds (418 lines/second)
Physical Source Lines of Code (SLOC) = 27
Hits@level = [0]   0 [1]   1 [2]   0 [3]   0 [4]   0 [5]   0
Hits@level+ = [0+]   1 [1+]   1 [2+]   0 [3+]   0 [4+]   0 [5+]   0
Hits/KSLOC@level+ = [0+] 37.037 [1+] 37.037 [2+]   0 [3+]   0 [4+]   0 [5+]   0
Dot directories skipped = 1 (--followdotdir overrides)
Minimum risk level = 1
Not every hit is necessarily a security vulnerability.
There may be other security vulnerabilities; review your code!
See 'Secure Programming HOWTO'
(https://dwheeler.com/secure-programs) for more information.