Flawfinder version 2.0.10, (C) 2001-2019 David A. Wheeler.
Number of rules (primarily dangerous function names) in C/C++ ruleset: 223
Examining data/indigo-1.2.3/api/indigo.h
Examining data/indigo-1.2.3/api/indigo_cpp.h
Examining data/indigo-1.2.3/api/plugins/bingo/bingo.h
Examining data/indigo-1.2.3/api/plugins/bingo/src/bingo.cpp
Examining data/indigo-1.2.3/api/plugins/bingo/src/bingo_base_index.cpp
Examining data/indigo-1.2.3/api/plugins/bingo/src/bingo_base_index.h
Examining data/indigo-1.2.3/api/plugins/bingo/src/bingo_cell_container.h
Examining data/indigo-1.2.3/api/plugins/bingo/src/bingo_cf_storage.cpp
Examining data/indigo-1.2.3/api/plugins/bingo/src/bingo_cf_storage.h
Examining data/indigo-1.2.3/api/plugins/bingo/src/bingo_container_set.cpp
Examining data/indigo-1.2.3/api/plugins/bingo/src/bingo_container_set.h
Examining data/indigo-1.2.3/api/plugins/bingo/src/bingo_euclid_coef.cpp
Examining data/indigo-1.2.3/api/plugins/bingo/src/bingo_euclid_coef.h
Examining data/indigo-1.2.3/api/plugins/bingo/src/bingo_exact_storage.cpp
Examining data/indigo-1.2.3/api/plugins/bingo/src/bingo_exact_storage.h
Examining data/indigo-1.2.3/api/plugins/bingo/src/bingo_fingerprint_table.cpp
Examining data/indigo-1.2.3/api/plugins/bingo/src/bingo_fingerprint_table.h
Examining data/indigo-1.2.3/api/plugins/bingo/src/bingo_fp_storage.cpp
Examining data/indigo-1.2.3/api/plugins/bingo/src/bingo_fp_storage.h
Examining data/indigo-1.2.3/api/plugins/bingo/src/bingo_gross_storage.cpp
Examining data/indigo-1.2.3/api/plugins/bingo/src/bingo_gross_storage.h
Examining data/indigo-1.2.3/api/plugins/bingo/src/bingo_index.cpp
Examining data/indigo-1.2.3/api/plugins/bingo/src/bingo_index.h
Examining data/indigo-1.2.3/api/plugins/bingo/src/bingo_internal.h
Examining data/indigo-1.2.3/api/plugins/bingo/src/bingo_lock.cpp
Examining data/indigo-1.2.3/api/plugins/bingo/src/bingo_lock.h
Examining data/indigo-1.2.3/api/plugins/bingo/src/bingo_mapping.cpp
Examining data/indigo-1.2.3/api/plugins/bingo/src/bingo_mapping.h
Examining data/indigo-1.2.3/api/plugins/bingo/src/bingo_matcher.cpp
Examining data/indigo-1.2.3/api/plugins/bingo/src/bingo_matcher.h
Examining data/indigo-1.2.3/api/plugins/bingo/src/bingo_mmf.cpp
Examining data/indigo-1.2.3/api/plugins/bingo/src/bingo_mmf.h
Examining data/indigo-1.2.3/api/plugins/bingo/src/bingo_mmf_storage.cpp
Examining data/indigo-1.2.3/api/plugins/bingo/src/bingo_mmf_storage.h
Examining data/indigo-1.2.3/api/plugins/bingo/src/bingo_multibit_tree.cpp
Examining data/indigo-1.2.3/api/plugins/bingo/src/bingo_multibit_tree.h
Examining data/indigo-1.2.3/api/plugins/bingo/src/bingo_object.cpp
Examining data/indigo-1.2.3/api/plugins/bingo/src/bingo_object.h
Examining data/indigo-1.2.3/api/plugins/bingo/src/bingo_properties.cpp
Examining data/indigo-1.2.3/api/plugins/bingo/src/bingo_properties.h
Examining data/indigo-1.2.3/api/plugins/bingo/src/bingo_ptr.cpp
Examining data/indigo-1.2.3/api/plugins/bingo/src/bingo_ptr.h
Examining data/indigo-1.2.3/api/plugins/bingo/src/bingo_sim_coef.h
Examining data/indigo-1.2.3/api/plugins/bingo/src/bingo_sim_storage.cpp
Examining data/indigo-1.2.3/api/plugins/bingo/src/bingo_sim_storge.h
Examining data/indigo-1.2.3/api/plugins/bingo/src/bingo_tanimoto_coef.cpp
Examining data/indigo-1.2.3/api/plugins/bingo/src/bingo_tanimoto_coef.h
Examining data/indigo-1.2.3/api/plugins/bingo/src/bingo_tversky_coef.cpp
Examining data/indigo-1.2.3/api/plugins/bingo/src/bingo_tversky_coef.h
Examining data/indigo-1.2.3/api/plugins/bingo/tests/c/bingo-test.c
Examining data/indigo-1.2.3/api/plugins/inchi/indigo-inchi.h
Examining data/indigo-1.2.3/api/plugins/inchi/src/indigo_inchi_api.cpp
Examining data/indigo-1.2.3/api/plugins/inchi/tests/c/indigo-inchi-test.c
Examining data/indigo-1.2.3/api/plugins/renderer/indigo-renderer.h
Examining data/indigo-1.2.3/api/plugins/renderer/src/indigo_render2d.cpp
Examining data/indigo-1.2.3/api/plugins/renderer/src/indigo_renderer_internal.h
Examining data/indigo-1.2.3/api/plugins/renderer/tests/c/indigo-renderer-test.c
Examining data/indigo-1.2.3/api/r/src/rindigo.cpp
Examining data/indigo-1.2.3/api/src/indigo.cpp
Examining data/indigo-1.2.3/api/src/indigo_abbreviations.h
Examining data/indigo-1.2.3/api/src/indigo_abbreviations_core.cpp
Examining data/indigo-1.2.3/api/src/indigo_abbreviations_expand.cpp
Examining data/indigo-1.2.3/api/src/indigo_array.cpp
Examining data/indigo-1.2.3/api/src/indigo_array.h
Examining data/indigo-1.2.3/api/src/indigo_basic.cpp
Examining data/indigo-1.2.3/api/src/indigo_composition.cpp
Examining data/indigo-1.2.3/api/src/indigo_deconvolution.cpp
Examining data/indigo-1.2.3/api/src/indigo_deconvolution.h
Examining data/indigo-1.2.3/api/src/indigo_fingerprints.cpp
Examining data/indigo-1.2.3/api/src/indigo_fingerprints.h
Examining data/indigo-1.2.3/api/src/indigo_internal.h
Examining data/indigo-1.2.3/api/src/indigo_io.cpp
Examining data/indigo-1.2.3/api/src/indigo_io.h
Examining data/indigo-1.2.3/api/src/indigo_layout.cpp
Examining data/indigo-1.2.3/api/src/indigo_loaders.cpp
Examining data/indigo-1.2.3/api/src/indigo_loaders.h
Examining data/indigo-1.2.3/api/src/indigo_macros.c
Examining data/indigo-1.2.3/api/src/indigo_mapping.cpp
Examining data/indigo-1.2.3/api/src/indigo_mapping.h
Examining data/indigo-1.2.3/api/src/indigo_match.cpp
Examining data/indigo-1.2.3/api/src/indigo_match.h
Examining data/indigo-1.2.3/api/src/indigo_misc.cpp
Examining data/indigo-1.2.3/api/src/indigo_molecule.cpp
Examining data/indigo-1.2.3/api/src/indigo_molecule.h
Examining data/indigo-1.2.3/api/src/indigo_object.cpp
Examining data/indigo-1.2.3/api/src/indigo_options.cpp
Examining data/indigo-1.2.3/api/src/indigo_product_enumerator.cpp
Examining data/indigo-1.2.3/api/src/indigo_properties.cpp
Examining data/indigo-1.2.3/api/src/indigo_properties.h
Examining data/indigo-1.2.3/api/src/indigo_reaction.cpp
Examining data/indigo-1.2.3/api/src/indigo_reaction.h
Examining data/indigo-1.2.3/api/src/indigo_savers.cpp
Examining data/indigo-1.2.3/api/src/indigo_savers.h
Examining data/indigo-1.2.3/api/src/indigo_scaffold.cpp
Examining data/indigo-1.2.3/api/src/indigo_scaffold.h
Examining data/indigo-1.2.3/api/src/indigo_stereo.cpp
Examining data/indigo-1.2.3/api/src/indigo_stereo.h
Examining data/indigo-1.2.3/api/src/indigo_tautomer_enumerator.cpp
Examining data/indigo-1.2.3/api/src/indigo_tautomer_enumerator.h
Examining data/indigo-1.2.3/api/src/option_manager.cpp
Examining data/indigo-1.2.3/api/src/option_manager.h
Examining data/indigo-1.2.3/api/tests/c/dlopen-test.c
Examining data/indigo-1.2.3/api/tests/c/indigo-test.c
Examining data/indigo-1.2.3/bingo/bingo-core-c/src/bingo_core_c.cpp
Examining data/indigo-1.2.3/bingo/bingo-core-c/src/bingo_core_c.h
Examining data/indigo-1.2.3/bingo/bingo-core-c/src/bingo_core_c_internal.h
Examining data/indigo-1.2.3/bingo/bingo-core-c/src/bingo_core_c_parallel.cpp
Examining data/indigo-1.2.3/bingo/bingo-core-c/src/bingo_core_c_parallel.h
Examining data/indigo-1.2.3/bingo/bingo-core-c/src/mango_core_c.cpp
Examining data/indigo-1.2.3/bingo/bingo-core-c/src/mango_core_c_parallel.cpp
Examining data/indigo-1.2.3/bingo/bingo-core-c/src/mango_core_c_parallel.h
Examining data/indigo-1.2.3/bingo/bingo-core-c/src/ringo_core_c.cpp
Examining data/indigo-1.2.3/bingo/bingo-core-c/src/ringo_core_c_parallel.cpp
Examining data/indigo-1.2.3/bingo/bingo-core-c/src/ringo_core_c_parallel.h
Examining data/indigo-1.2.3/bingo/bingo-core/src/core/bingo_context.cpp
Examining data/indigo-1.2.3/bingo/bingo-core/src/core/bingo_context.h
Examining data/indigo-1.2.3/bingo/bingo-core/src/core/bingo_error.h
Examining data/indigo-1.2.3/bingo/bingo-core/src/core/bingo_index.h
Examining data/indigo-1.2.3/bingo/bingo-core/src/core/mango_context.cpp
Examining data/indigo-1.2.3/bingo/bingo-core/src/core/mango_context.h
Examining data/indigo-1.2.3/bingo/bingo-core/src/core/mango_exact.cpp
Examining data/indigo-1.2.3/bingo/bingo-core/src/core/mango_gross.cpp
Examining data/indigo-1.2.3/bingo/bingo-core/src/core/mango_index.cpp
Examining data/indigo-1.2.3/bingo/bingo-core/src/core/mango_index.h
Examining data/indigo-1.2.3/bingo/bingo-core/src/core/mango_matchers.h
Examining data/indigo-1.2.3/bingo/bingo-core/src/core/mango_similarity.cpp
Examining data/indigo-1.2.3/bingo/bingo-core/src/core/mango_substructure.cpp
Examining data/indigo-1.2.3/bingo/bingo-core/src/core/mango_tautomer.cpp
Examining data/indigo-1.2.3/bingo/bingo-core/src/core/ringo_aam.cpp
Examining data/indigo-1.2.3/bingo/bingo-core/src/core/ringo_context.cpp
Examining data/indigo-1.2.3/bingo/bingo-core/src/core/ringo_context.h
Examining data/indigo-1.2.3/bingo/bingo-core/src/core/ringo_exact.cpp
Examining data/indigo-1.2.3/bingo/bingo-core/src/core/ringo_index.cpp
Examining data/indigo-1.2.3/bingo/bingo-core/src/core/ringo_index.h
Examining data/indigo-1.2.3/bingo/bingo-core/src/core/ringo_matchers.h
Examining data/indigo-1.2.3/bingo/bingo-core/src/core/ringo_substructure.cpp
Examining data/indigo-1.2.3/bingo/oracle/src/oracle/bingo_fetch_engine.cpp
Examining data/indigo-1.2.3/bingo/oracle/src/oracle/bingo_fetch_engine.h
Examining data/indigo-1.2.3/bingo/oracle/src/oracle/bingo_fingerprints.cpp
Examining data/indigo-1.2.3/bingo/oracle/src/oracle/bingo_fingerprints.h
Examining data/indigo-1.2.3/bingo/oracle/src/oracle/bingo_oracle.cpp
Examining data/indigo-1.2.3/bingo/oracle/src/oracle/bingo_oracle.h
Examining data/indigo-1.2.3/bingo/oracle/src/oracle/bingo_oracle_config.cpp
Examining data/indigo-1.2.3/bingo/oracle/src/oracle/bingo_oracle_context.cpp
Examining data/indigo-1.2.3/bingo/oracle/src/oracle/bingo_oracle_context.h
Examining data/indigo-1.2.3/bingo/oracle/src/oracle/bingo_oracle_parallel.cpp
Examining data/indigo-1.2.3/bingo/oracle/src/oracle/bingo_oracle_parallel.h
Examining data/indigo-1.2.3/bingo/oracle/src/oracle/bingo_oracle_util.cpp
Examining data/indigo-1.2.3/bingo/oracle/src/oracle/bingo_profiling.cpp
Examining data/indigo-1.2.3/bingo/oracle/src/oracle/bingo_profiling.h
Examining data/indigo-1.2.3/bingo/oracle/src/oracle/bingo_storage.cpp
Examining data/indigo-1.2.3/bingo/oracle/src/oracle/bingo_storage.h
Examining data/indigo-1.2.3/bingo/oracle/src/oracle/dll_main.cpp
Examining data/indigo-1.2.3/bingo/oracle/src/oracle/mango_fast_index.cpp
Examining data/indigo-1.2.3/bingo/oracle/src/oracle/mango_fast_index.h
Examining data/indigo-1.2.3/bingo/oracle/src/oracle/mango_fetch_context.cpp
Examining data/indigo-1.2.3/bingo/oracle/src/oracle/mango_fetch_context.h
Examining data/indigo-1.2.3/bingo/oracle/src/oracle/mango_operators.cpp
Examining data/indigo-1.2.3/bingo/oracle/src/oracle/mango_oracle.cpp
Examining data/indigo-1.2.3/bingo/oracle/src/oracle/mango_oracle.h
Examining data/indigo-1.2.3/bingo/oracle/src/oracle/mango_oracle_fetch.cpp
Examining data/indigo-1.2.3/bingo/oracle/src/oracle/mango_oracle_index.cpp
Examining data/indigo-1.2.3/bingo/oracle/src/oracle/mango_oracle_index_parallel.cpp
Examining data/indigo-1.2.3/bingo/oracle/src/oracle/mango_oracle_index_parallel.h
Examining data/indigo-1.2.3/bingo/oracle/src/oracle/mango_oracle_util.cpp
Examining data/indigo-1.2.3/bingo/oracle/src/oracle/mango_shadow_fetch.cpp
Examining data/indigo-1.2.3/bingo/oracle/src/oracle/mango_shadow_fetch.h
Examining data/indigo-1.2.3/bingo/oracle/src/oracle/mango_shadow_table.cpp
Examining data/indigo-1.2.3/bingo/oracle/src/oracle/mango_shadow_table.h
Examining data/indigo-1.2.3/bingo/oracle/src/oracle/ringo_fast_index.cpp
Examining data/indigo-1.2.3/bingo/oracle/src/oracle/ringo_fast_index.h
Examining data/indigo-1.2.3/bingo/oracle/src/oracle/ringo_fetch_context.cpp
Examining data/indigo-1.2.3/bingo/oracle/src/oracle/ringo_fetch_context.h
Examining data/indigo-1.2.3/bingo/oracle/src/oracle/ringo_operators.cpp
Examining data/indigo-1.2.3/bingo/oracle/src/oracle/ringo_oracle.cpp
Examining data/indigo-1.2.3/bingo/oracle/src/oracle/ringo_oracle.h
Examining data/indigo-1.2.3/bingo/oracle/src/oracle/ringo_oracle_fetch.cpp
Examining data/indigo-1.2.3/bingo/oracle/src/oracle/ringo_oracle_index.cpp
Examining data/indigo-1.2.3/bingo/oracle/src/oracle/ringo_oracle_util.cpp
Examining data/indigo-1.2.3/bingo/oracle/src/oracle/ringo_shadow_fetch.cpp
Examining data/indigo-1.2.3/bingo/oracle/src/oracle/ringo_shadow_fetch.h
Examining data/indigo-1.2.3/bingo/oracle/src/oracle/ringo_shadow_table.cpp
Examining data/indigo-1.2.3/bingo/oracle/src/oracle/ringo_shadow_table.h
Examining data/indigo-1.2.3/bingo/oracle/src/oracle/rowid_loader.cpp
Examining data/indigo-1.2.3/bingo/oracle/src/oracle/rowid_loader.h
Examining data/indigo-1.2.3/bingo/oracle/src/oracle/rowid_saver.cpp
Examining data/indigo-1.2.3/bingo/oracle/src/oracle/rowid_saver.h
Examining data/indigo-1.2.3/bingo/oracle/src/oracle/rowid_symbol_codes.h
Examining data/indigo-1.2.3/bingo/oracle/src/oracle/warnings_table.cpp
Examining data/indigo-1.2.3/bingo/oracle/src/oracle/warnings_table.h
Examining data/indigo-1.2.3/bingo/postgres/src/pg_am/pg_bingo_build.cpp
Examining data/indigo-1.2.3/bingo/postgres/src/pg_am/pg_bingo_costestimate.c
Examining data/indigo-1.2.3/bingo/postgres/src/pg_am/pg_bingo_gist.c
Examining data/indigo-1.2.3/bingo/postgres/src/pg_am/pg_bingo_import.cpp
Examining data/indigo-1.2.3/bingo/postgres/src/pg_am/pg_bingo_options.cpp
Examining data/indigo-1.2.3/bingo/postgres/src/pg_am/pg_bingo_search.cpp
Examining data/indigo-1.2.3/bingo/postgres/src/pg_am/pg_bingo_update.cpp
Examining data/indigo-1.2.3/bingo/postgres/src/pg_am/pg_bingo_utils.cpp
Examining data/indigo-1.2.3/bingo/postgres/src/pg_am/pg_mango_match.cpp
Examining data/indigo-1.2.3/bingo/postgres/src/pg_am/pg_mango_utils.cpp
Examining data/indigo-1.2.3/bingo/postgres/src/pg_am/pg_ringo_match.cpp
Examining data/indigo-1.2.3/bingo/postgres/src/pg_am/pg_ringo_utils.cpp
Examining data/indigo-1.2.3/bingo/postgres/src/pg_common/bingo_pg_buffer.cpp
Examining data/indigo-1.2.3/bingo/postgres/src/pg_common/bingo_pg_buffer.h
Examining data/indigo-1.2.3/bingo/postgres/src/pg_common/bingo_pg_buffer_cache.cpp
Examining data/indigo-1.2.3/bingo/postgres/src/pg_common/bingo_pg_buffer_cache.h
Examining data/indigo-1.2.3/bingo/postgres/src/pg_common/bingo_pg_common.cpp
Examining data/indigo-1.2.3/bingo/postgres/src/pg_common/bingo_pg_common.h
Examining data/indigo-1.2.3/bingo/postgres/src/pg_common/bingo_pg_cursor.cpp
Examining data/indigo-1.2.3/bingo/postgres/src/pg_common/bingo_pg_cursor.h
Examining data/indigo-1.2.3/bingo/postgres/src/pg_common/bingo_pg_ext_bitset.cpp
Examining data/indigo-1.2.3/bingo/postgres/src/pg_common/bingo_pg_ext_bitset.h
Examining data/indigo-1.2.3/bingo/postgres/src/pg_common/bingo_pg_fix_post.h
Examining data/indigo-1.2.3/bingo/postgres/src/pg_common/bingo_pg_fix_pre.h
Examining data/indigo-1.2.3/bingo/postgres/src/pg_common/bingo_pg_section.cpp
Examining data/indigo-1.2.3/bingo/postgres/src/pg_common/bingo_pg_section.h
Examining data/indigo-1.2.3/bingo/postgres/src/pg_common/bingo_pg_text.cpp
Examining data/indigo-1.2.3/bingo/postgres/src/pg_common/bingo_pg_text.h
Examining data/indigo-1.2.3/bingo/postgres/src/pg_common/bingo_postgres.h
Examining data/indigo-1.2.3/bingo/postgres/src/pg_common/pg_bingo_context.h
Examining data/indigo-1.2.3/bingo/postgres/src/pg_core/bingo_pg_build.cpp
Examining data/indigo-1.2.3/bingo/postgres/src/pg_core/bingo_pg_build.h
Examining data/indigo-1.2.3/bingo/postgres/src/pg_core/bingo_pg_build_engine.cpp
Examining data/indigo-1.2.3/bingo/postgres/src/pg_core/bingo_pg_build_engine.h
Examining data/indigo-1.2.3/bingo/postgres/src/pg_core/bingo_pg_config.cpp
Examining data/indigo-1.2.3/bingo/postgres/src/pg_core/bingo_pg_config.h
Examining data/indigo-1.2.3/bingo/postgres/src/pg_core/bingo_pg_index.cpp
Examining data/indigo-1.2.3/bingo/postgres/src/pg_core/bingo_pg_index.h
Examining data/indigo-1.2.3/bingo/postgres/src/pg_core/bingo_pg_search.cpp
Examining data/indigo-1.2.3/bingo/postgres/src/pg_core/bingo_pg_search.h
Examining data/indigo-1.2.3/bingo/postgres/src/pg_core/bingo_pg_search_engine.cpp
Examining data/indigo-1.2.3/bingo/postgres/src/pg_core/bingo_pg_search_engine.h
Examining data/indigo-1.2.3/bingo/postgres/src/pg_core/mango_pg_build_engine.cpp
Examining data/indigo-1.2.3/bingo/postgres/src/pg_core/mango_pg_build_engine.h
Examining data/indigo-1.2.3/bingo/postgres/src/pg_core/mango_pg_search_engine.cpp
Examining data/indigo-1.2.3/bingo/postgres/src/pg_core/mango_pg_search_engine.h
Examining data/indigo-1.2.3/bingo/postgres/src/pg_core/ringo_pg_build_engine.cpp
Examining data/indigo-1.2.3/bingo/postgres/src/pg_core/ringo_pg_build_engine.h
Examining data/indigo-1.2.3/bingo/postgres/src/pg_core/ringo_pg_search_engine.cpp
Examining data/indigo-1.2.3/bingo/postgres/src/pg_core/ringo_pg_search_engine.h
Examining data/indigo-1.2.3/common/base_c/bitarray.c
Examining data/indigo-1.2.3/common/base_c/bitarray.h
Examining data/indigo-1.2.3/common/base_c/defs.h
Examining data/indigo-1.2.3/common/base_c/nano.h
Examining data/indigo-1.2.3/common/base_c/nano_posix.c
Examining data/indigo-1.2.3/common/base_c/nano_win.c
Examining data/indigo-1.2.3/common/base_c/os_dir.h
Examining data/indigo-1.2.3/common/base_c/os_dir_posix.c
Examining data/indigo-1.2.3/common/base_c/os_dir_win32.c
Examining data/indigo-1.2.3/common/base_c/os_sync.h
Examining data/indigo-1.2.3/common/base_c/os_sync_posix.c
Examining data/indigo-1.2.3/common/base_c/os_sync_win32.c
Examining data/indigo-1.2.3/common/base_c/os_thread.h
Examining data/indigo-1.2.3/common/base_c/os_thread_posix.c
Examining data/indigo-1.2.3/common/base_c/os_thread_win32.c
Examining data/indigo-1.2.3/common/base_c/os_tls.h
Examining data/indigo-1.2.3/common/base_c/os_tls_posix.c
Examining data/indigo-1.2.3/common/base_c/os_tls_win32.c
Examining data/indigo-1.2.3/common/base_cpp/array.h
Examining data/indigo-1.2.3/common/base_cpp/auto_iter.h
Examining data/indigo-1.2.3/common/base_cpp/auto_ptr.h
Examining data/indigo-1.2.3/common/base_cpp/bitinworker.cpp
Examining data/indigo-1.2.3/common/base_cpp/bitinworker.h
Examining data/indigo-1.2.3/common/base_cpp/bitoutworker.cpp
Examining data/indigo-1.2.3/common/base_cpp/bitoutworker.h
Examining data/indigo-1.2.3/common/base_cpp/cancellation_handler.cpp
Examining data/indigo-1.2.3/common/base_cpp/cancellation_handler.h
Examining data/indigo-1.2.3/common/base_cpp/chunk_storage.cpp
Examining data/indigo-1.2.3/common/base_cpp/chunk_storage.h
Examining data/indigo-1.2.3/common/base_cpp/common_exceptions_impl.cpp
Examining data/indigo-1.2.3/common/base_cpp/crc32.cpp
Examining data/indigo-1.2.3/common/base_cpp/crc32.h
Examining data/indigo-1.2.3/common/base_cpp/cyclic_array.h
Examining data/indigo-1.2.3/common/base_cpp/d_bitset.cpp
Examining data/indigo-1.2.3/common/base_cpp/d_bitset.h
Examining data/indigo-1.2.3/common/base_cpp/exception.cpp
Examining data/indigo-1.2.3/common/base_cpp/exception.h
Examining data/indigo-1.2.3/common/base_cpp/gray_codes.cpp
Examining data/indigo-1.2.3/common/base_cpp/gray_codes.h
Examining data/indigo-1.2.3/common/base_cpp/io_base.cpp
Examining data/indigo-1.2.3/common/base_cpp/io_base.h
Examining data/indigo-1.2.3/common/base_cpp/list.h
Examining data/indigo-1.2.3/common/base_cpp/locale_guard.cpp
Examining data/indigo-1.2.3/common/base_cpp/multimap.h
Examining data/indigo-1.2.3/common/base_cpp/non_copyable.h
Examining data/indigo-1.2.3/common/base_cpp/nullable.h
Examining data/indigo-1.2.3/common/base_cpp/obj.h
Examining data/indigo-1.2.3/common/base_cpp/obj_array.h
Examining data/indigo-1.2.3/common/base_cpp/obj_list.h
Examining data/indigo-1.2.3/common/base_cpp/obj_pool.h
Examining data/indigo-1.2.3/common/base_cpp/os_sync_wrapper.cpp
Examining data/indigo-1.2.3/common/base_cpp/os_sync_wrapper.h
Examining data/indigo-1.2.3/common/base_cpp/os_thread_wrapper.cpp
Examining data/indigo-1.2.3/common/base_cpp/os_thread_wrapper.h
Examining data/indigo-1.2.3/common/base_cpp/output.cpp
Examining data/indigo-1.2.3/common/base_cpp/output.h
Examining data/indigo-1.2.3/common/base_cpp/pool.h
Examining data/indigo-1.2.3/common/base_cpp/profiling.cpp
Examining data/indigo-1.2.3/common/base_cpp/profiling.h
Examining data/indigo-1.2.3/common/base_cpp/properties_map.cpp
Examining data/indigo-1.2.3/common/base_cpp/properties_map.h
Examining data/indigo-1.2.3/common/base_cpp/ptr_array.h
Examining data/indigo-1.2.3/common/base_cpp/ptr_pool.h
Examining data/indigo-1.2.3/common/base_cpp/queue.h
Examining data/indigo-1.2.3/common/base_cpp/red_black.h
Examining data/indigo-1.2.3/common/base_cpp/reusable_obj_array.h
Examining data/indigo-1.2.3/common/base_cpp/scanner.cpp
Examining data/indigo-1.2.3/common/base_cpp/scanner.h
Examining data/indigo-1.2.3/common/base_cpp/shared_ptr.cpp
Examining data/indigo-1.2.3/common/base_cpp/shared_ptr.h
Examining data/indigo-1.2.3/common/base_cpp/shmem.h
Examining data/indigo-1.2.3/common/base_cpp/shmem_posix.cpp
Examining data/indigo-1.2.3/common/base_cpp/shmem_win32.cpp
Examining data/indigo-1.2.3/common/base_cpp/smart_output.cpp
Examining data/indigo-1.2.3/common/base_cpp/smart_output.h
Examining data/indigo-1.2.3/common/base_cpp/string_pool.cpp
Examining data/indigo-1.2.3/common/base_cpp/string_pool.h
Examining data/indigo-1.2.3/common/base_cpp/temporary_thread_obj.h
Examining data/indigo-1.2.3/common/base_cpp/temporary_thread_obj.hpp
Examining data/indigo-1.2.3/common/base_cpp/tlscont.cpp
Examining data/indigo-1.2.3/common/base_cpp/tlscont.h
Examining data/indigo-1.2.3/common/base_cpp/locale_guard.h
Examining data/indigo-1.2.3/common/gzip/gzip_output.cpp
Examining data/indigo-1.2.3/common/gzip/gzip_output.h
Examining data/indigo-1.2.3/common/gzip/gzip_scanner.cpp
Examining data/indigo-1.2.3/common/gzip/gzip_scanner.h
Examining data/indigo-1.2.3/common/hacks/gcc_preinclude.h
Examining data/indigo-1.2.3/common/hacks/memcpy.c
Examining data/indigo-1.2.3/common/lzw/lzw_decoder.cpp
Examining data/indigo-1.2.3/common/lzw/lzw_decoder.h
Examining data/indigo-1.2.3/common/lzw/lzw_dictionary.cpp
Examining data/indigo-1.2.3/common/lzw/lzw_dictionary.h
Examining data/indigo-1.2.3/common/lzw/lzw_encoder.cpp
Examining data/indigo-1.2.3/common/lzw/lzw_encoder.h
Examining data/indigo-1.2.3/common/math/algebra.h
Examining data/indigo-1.2.3/common/math/best_fit.cpp
Examining data/indigo-1.2.3/common/math/line3f.cpp
Examining data/indigo-1.2.3/common/math/lseg3f.cpp
Examining data/indigo-1.2.3/common/math/matr3x3d.cpp
Examining data/indigo-1.2.3/common/math/plane3f.cpp
Examining data/indigo-1.2.3/common/math/random.cpp
Examining data/indigo-1.2.3/common/math/random.h
Examining data/indigo-1.2.3/common/math/statistics.cpp
Examining data/indigo-1.2.3/common/math/statistics.h
Examining data/indigo-1.2.3/common/math/transform3f.cpp
Examining data/indigo-1.2.3/common/math/vec2f.cpp
Examining data/indigo-1.2.3/common/math/vec3f.cpp
Examining data/indigo-1.2.3/common/oracle/ora_error.cpp
Examining data/indigo-1.2.3/common/oracle/ora_logger.cpp
Examining data/indigo-1.2.3/common/oracle/ora_logger.h
Examining data/indigo-1.2.3/common/oracle/ora_wrap.cpp
Examining data/indigo-1.2.3/common/oracle/ora_wrap.h
Examining data/indigo-1.2.3/common/unit_test/cpp_unit.h
Examining data/indigo-1.2.3/common/unit_test/test.cpp
Examining data/indigo-1.2.3/common/unit_test/test.h
Examining data/indigo-1.2.3/common/unit_test/test_failure.cpp
Examining data/indigo-1.2.3/common/unit_test/test_failure.h
Examining data/indigo-1.2.3/common/unit_test/test_registry.cpp
Examining data/indigo-1.2.3/common/unit_test/test_registry.h
Examining data/indigo-1.2.3/common/unit_test/test_result.cpp
Examining data/indigo-1.2.3/common/unit_test/test_result.h
Examining data/indigo-1.2.3/common/unit_test/test_result_stderr.cpp
Examining data/indigo-1.2.3/common/unit_test/test_result_stderr.h
Examining data/indigo-1.2.3/graph/automorphism_search.h
Examining data/indigo-1.2.3/graph/aux_path_finder.h
Examining data/indigo-1.2.3/graph/biconnected_decomposer.h
Examining data/indigo-1.2.3/graph/cycle_basis.h
Examining data/indigo-1.2.3/graph/cycle_enumerator.h
Examining data/indigo-1.2.3/graph/dfs_walk.h
Examining data/indigo-1.2.3/graph/edge_rotation_matcher.h
Examining data/indigo-1.2.3/graph/edge_subgraph_enumerator.h
Examining data/indigo-1.2.3/graph/embedding_enumerator.h
Examining data/indigo-1.2.3/graph/embeddings_storage.h
Examining data/indigo-1.2.3/graph/filter.h
Examining data/indigo-1.2.3/graph/graph.h
Examining data/indigo-1.2.3/graph/graph_affine_matcher.h
Examining data/indigo-1.2.3/graph/graph_constrained_bmatching_finder.h
Examining data/indigo-1.2.3/graph/graph_decomposer.h
Examining data/indigo-1.2.3/graph/graph_fast_access.h
Examining data/indigo-1.2.3/graph/graph_iterators.h
Examining data/indigo-1.2.3/graph/graph_perfect_matching.h
Examining data/indigo-1.2.3/graph/graph_subchain_enumerator.h
Examining data/indigo-1.2.3/graph/graph_subtree_enumerator.h
Examining data/indigo-1.2.3/graph/graph_vertex_equivalence.h
Examining data/indigo-1.2.3/graph/max_common_subgraph.h
Examining data/indigo-1.2.3/graph/morgan_code.h
Examining data/indigo-1.2.3/graph/path_enumerator.h
Examining data/indigo-1.2.3/graph/scaffold_detection.h
Examining data/indigo-1.2.3/graph/shortest_path_finder.h
Examining data/indigo-1.2.3/graph/simple_cycle_basis.h
Examining data/indigo-1.2.3/graph/skew_symmetric_flow_finder.h
Examining data/indigo-1.2.3/graph/skew_symmetric_network.h
Examining data/indigo-1.2.3/graph/spanning_tree.h
Examining data/indigo-1.2.3/graph/src/automorphism_search.cpp
Examining data/indigo-1.2.3/graph/src/aux_path_finder.cpp
Examining data/indigo-1.2.3/graph/src/biconnected_decomposer.cpp
Examining data/indigo-1.2.3/graph/src/cycle_basis.cpp
Examining data/indigo-1.2.3/graph/src/cycle_enumerator.cpp
Examining data/indigo-1.2.3/graph/src/dfs_walk.cpp
Examining data/indigo-1.2.3/graph/src/edge_rotation_matcher.cpp
Examining data/indigo-1.2.3/graph/src/edge_subgraph_enumerator.cpp
Examining data/indigo-1.2.3/graph/src/embedding_enumerator.cpp
Examining data/indigo-1.2.3/graph/src/embeddings_storage.cpp
Examining data/indigo-1.2.3/graph/src/filter.cpp
Examining data/indigo-1.2.3/graph/src/graph.cpp
Examining data/indigo-1.2.3/graph/src/graph_affine_matcher.cpp
Examining data/indigo-1.2.3/graph/src/graph_constrained_bmatching_finder.cpp
Examining data/indigo-1.2.3/graph/src/graph_decomposer.cpp
Examining data/indigo-1.2.3/graph/src/graph_fast_access.cpp
Examining data/indigo-1.2.3/graph/src/graph_iterators.cpp
Examining data/indigo-1.2.3/graph/src/graph_perfect_matching.cpp
Examining data/indigo-1.2.3/graph/src/graph_subchain_enumerator.cpp
Examining data/indigo-1.2.3/graph/src/graph_subtree_enumerator.cpp
Examining data/indigo-1.2.3/graph/src/max_common_subgraph.cpp
Examining data/indigo-1.2.3/graph/src/morgan_code.cpp
Examining data/indigo-1.2.3/graph/src/path_enumerator.cpp
Examining data/indigo-1.2.3/graph/src/scaffold_detection.cpp
Examining data/indigo-1.2.3/graph/src/shortest_path_finder.cpp
Examining data/indigo-1.2.3/graph/src/simple_cycle_basis.cpp
Examining data/indigo-1.2.3/graph/src/skew_symmetric_flow_finder.cpp
Examining data/indigo-1.2.3/graph/src/skew_symmetric_network.cpp
Examining data/indigo-1.2.3/graph/src/spanning_tree.cpp
Examining data/indigo-1.2.3/graph/src/subgraph_hash.cpp
Examining data/indigo-1.2.3/graph/subgraph_hash.h
Examining data/indigo-1.2.3/layout/attachment_layout.h
Examining data/indigo-1.2.3/layout/layout_pattern.h
Examining data/indigo-1.2.3/layout/layout_pattern_smart.h
Examining data/indigo-1.2.3/layout/metalayout.h
Examining data/indigo-1.2.3/layout/molecule_layout.h
Examining data/indigo-1.2.3/layout/molecule_layout_graph.h
Examining data/indigo-1.2.3/layout/molecule_layout_macrocycles.h
Examining data/indigo-1.2.3/layout/patmake/patmake.cpp
Examining data/indigo-1.2.3/layout/reaction_layout.h
Examining data/indigo-1.2.3/layout/refinement_state.h
Examining data/indigo-1.2.3/layout/src/attachment_layout.cpp
Examining data/indigo-1.2.3/layout/src/layout_pattern.cpp
Examining data/indigo-1.2.3/layout/src/layout_pattern_smart.cpp
Examining data/indigo-1.2.3/layout/src/metalayout.cpp
Examining data/indigo-1.2.3/layout/src/molecule_layout.cpp
Examining data/indigo-1.2.3/layout/src/molecule_layout_graph.cpp
Examining data/indigo-1.2.3/layout/src/molecule_layout_graph_assign.cpp
Examining data/indigo-1.2.3/layout/src/molecule_layout_graph_assign_smart.cpp
Examining data/indigo-1.2.3/layout/src/molecule_layout_graph_attach.cpp
Examining data/indigo-1.2.3/layout/src/molecule_layout_graph_border.cpp
Examining data/indigo-1.2.3/layout/src/molecule_layout_graph_cycle.cpp
Examining data/indigo-1.2.3/layout/src/molecule_layout_graph_geom.cpp
Examining data/indigo-1.2.3/layout/src/molecule_layout_graph_refine.cpp
Examining data/indigo-1.2.3/layout/src/molecule_layout_graph_smart.cpp
Examining data/indigo-1.2.3/layout/src/molecule_layout_macrocycle_lattice.cpp
Examining data/indigo-1.2.3/layout/src/molecule_layout_macrocycles.cpp
Examining data/indigo-1.2.3/layout/src/reaction_layout.cpp
Examining data/indigo-1.2.3/layout/src/refinement_state.cpp
Examining data/indigo-1.2.3/molecule/CDXConstants.h