Flawfinder version 2.0.10, (C) 2001-2019 David A. Wheeler.
Number of rules (primarily dangerous function names) in C/C++ ruleset: 223
Examining data/jellyfish1-1.1.11/jellyfish/atomic_gcc.hpp
Examining data/jellyfish1-1.1.11/jellyfish/misc.hpp
Examining data/jellyfish1-1.1.11/jellyfish/file_parser.hpp
Examining data/jellyfish1-1.1.11/jellyfish/half.h
Examining data/jellyfish1-1.1.11/jellyfish/histo_fastq_main_cmdline.hpp
Examining data/jellyfish1-1.1.11/jellyfish/query_cmdline.hpp
Examining data/jellyfish1-1.1.11/jellyfish/stats_main_cmdline.hpp
Examining data/jellyfish1-1.1.11/jellyfish/time.hpp
Examining data/jellyfish1-1.1.11/jellyfish/allocators_mmap.hpp
Examining data/jellyfish1-1.1.11/jellyfish/raw_dumper.hpp
Examining data/jellyfish1-1.1.11/jellyfish/storage.hpp
Examining data/jellyfish1-1.1.11/jellyfish/compacted_dumper.hpp
Examining data/jellyfish1-1.1.11/jellyfish/yaggo.cpp
Examining data/jellyfish1-1.1.11/jellyfish/sequence_parser.hpp
Examining data/jellyfish1-1.1.11/jellyfish/toFloat.h
Examining data/jellyfish1-1.1.11/jellyfish/reversible_hash_function.hpp
Examining data/jellyfish1-1.1.11/jellyfish/storage.cc
Examining data/jellyfish1-1.1.11/jellyfish/cite_cmdline.hpp
Examining data/jellyfish1-1.1.11/jellyfish/capped_integer.hpp
Examining data/jellyfish1-1.1.11/jellyfish/hash_merge_cmdline.hpp
Examining data/jellyfish1-1.1.11/jellyfish/thread_exec.cc
Examining data/jellyfish1-1.1.11/jellyfish/floats.cc
Examining data/jellyfish1-1.1.11/jellyfish/dump_fastq_main_cmdline.hpp
Examining data/jellyfish1-1.1.11/jellyfish/jellyfish.cc
Examining data/jellyfish1-1.1.11/jellyfish/seq_qual_parser.cc
Examining data/jellyfish1-1.1.11/jellyfish/sorted_dumper.hpp
Examining data/jellyfish1-1.1.11/jellyfish/parse_quake.hpp
Examining data/jellyfish1-1.1.11/jellyfish/parse_dna.cc
Examining data/jellyfish1-1.1.11/jellyfish/circular_buffer.hpp
Examining data/jellyfish1-1.1.11/jellyfish/hash_fastq_merge_cmdline.hpp
Examining data/jellyfish1-1.1.11/jellyfish/counter.hpp
Examining data/jellyfish1-1.1.11/jellyfish/floats.hpp
Examining data/jellyfish1-1.1.11/jellyfish/divisor.hpp
Examining data/jellyfish1-1.1.11/jellyfish/histo_main.cc
Examining data/jellyfish1-1.1.11/jellyfish/compacted_hash.hpp
Examining data/jellyfish1-1.1.11/jellyfish/locking_hash_counters.hpp
Examining data/jellyfish1-1.1.11/jellyfish/eLut.h
Examining data/jellyfish1-1.1.11/jellyfish/allocators_mmap.cc
Examining data/jellyfish1-1.1.11/jellyfish/test_read_parser.cc
Examining data/jellyfish1-1.1.11/jellyfish/backtrace.cc
Examining data/jellyfish1-1.1.11/jellyfish/generate_sequence.cc
Examining data/jellyfish1-1.1.11/jellyfish/double_fifo_input.hpp
Examining data/jellyfish1-1.1.11/jellyfish/noop_dumper.hpp
Examining data/jellyfish1-1.1.11/jellyfish/parse_dna.hpp
Examining data/jellyfish1-1.1.11/jellyfish/dump_main.cc
Examining data/jellyfish1-1.1.11/jellyfish/hash_merge.cc
Examining data/jellyfish1-1.1.11/jellyfish/mapped_file.cc
Examining data/jellyfish1-1.1.11/jellyfish/fastq_dumper.hpp
Examining data/jellyfish1-1.1.11/jellyfish/allocators_malloc.hpp
Examining data/jellyfish1-1.1.11/jellyfish/misc.cc
Examining data/jellyfish1-1.1.11/jellyfish/sequence_parser.cc
Examining data/jellyfish1-1.1.11/jellyfish/direct_sorted_dumper.hpp
Examining data/jellyfish1-1.1.11/jellyfish/hash_function.hpp
Examining data/jellyfish1-1.1.11/jellyfish/thread_exec.hpp
Examining data/jellyfish1-1.1.11/jellyfish/direct_indexing_array.hpp
Examining data/jellyfish1-1.1.11/jellyfish/half.cpp