Flawfinder version 2.0.10, (C) 2001-2019 David A. Wheeler.
Number of rules (primarily dangerous function names) in C/C++ ruleset: 223
Examining data/khmer-2.1.2+dfsg/examples/c++-api/bloom.cc
Examining data/khmer-2.1.2+dfsg/examples/c++-api/consume.cc
Examining data/khmer-2.1.2+dfsg/examples/c++-api/exact-counting.cc
Examining data/khmer-2.1.2+dfsg/src/khmer/_cpy_countgraph.cc
Examining data/khmer-2.1.2+dfsg/src/khmer/_cpy_counttable.cc
Examining data/khmer-2.1.2+dfsg/src/khmer/_cpy_graphlabels.cc
Examining data/khmer-2.1.2+dfsg/src/khmer/_cpy_hashgraph.cc
Examining data/khmer-2.1.2+dfsg/src/khmer/_cpy_hashset.cc
Examining data/khmer-2.1.2+dfsg/src/khmer/_cpy_hashtable.cc
Examining data/khmer-2.1.2+dfsg/src/khmer/_cpy_hllcounter.cc
Examining data/khmer-2.1.2+dfsg/src/khmer/_cpy_khmer.cc
Examining data/khmer-2.1.2+dfsg/src/khmer/_cpy_nodegraph.cc
Examining data/khmer-2.1.2+dfsg/src/khmer/_cpy_nodetable.cc
Examining data/khmer-2.1.2+dfsg/src/khmer/_cpy_readaligner.cc
Examining data/khmer-2.1.2+dfsg/src/khmer/_cpy_readparsers.cc
Examining data/khmer-2.1.2+dfsg/src/khmer/_cpy_smallcountgraph.cc
Examining data/khmer-2.1.2+dfsg/src/khmer/_cpy_smallcounttable.cc
Examining data/khmer-2.1.2+dfsg/src/khmer/_cpy_subsetpartition.cc
Examining data/khmer-2.1.2+dfsg/src/khmer/_cpy_utils.cc
Examining data/khmer-2.1.2+dfsg/src/oxli/.check_openmp.cc
Examining data/khmer-2.1.2+dfsg/src/oxli/alphabets.cc
Examining data/khmer-2.1.2+dfsg/src/oxli/assembler.cc
Examining data/khmer-2.1.2+dfsg/src/oxli/hashgraph.cc
Examining data/khmer-2.1.2+dfsg/src/oxli/hashtable.cc
Examining data/khmer-2.1.2+dfsg/src/oxli/hllcounter.cc
Examining data/khmer-2.1.2+dfsg/src/oxli/kmer_filters.cc
Examining data/khmer-2.1.2+dfsg/src/oxli/kmer_hash.cc
Examining data/khmer-2.1.2+dfsg/src/oxli/labelhash.cc
Examining data/khmer-2.1.2+dfsg/src/oxli/read_aligner.cc
Examining data/khmer-2.1.2+dfsg/src/oxli/read_parsers.cc
Examining data/khmer-2.1.2+dfsg/src/oxli/storage.cc
Examining data/khmer-2.1.2+dfsg/src/oxli/subset.cc
Examining data/khmer-2.1.2+dfsg/src/oxli/test-Colors.cc
Examining data/khmer-2.1.2+dfsg/src/oxli/traversal.cc
Examining data/khmer-2.1.2+dfsg/src/oxli/test-compile.cc
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/align.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/align/align_base.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/align/align_cols.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/align/align_config.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/align/align_iterator_base.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/align/align_metafunctions.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/align/align_traceback.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/align/alignment_algorithm_tags.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/align/alignment_operations.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/align/dp_algorithm_impl.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/align/dp_band.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/align/dp_cell.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/align/dp_cell_affine.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/align/dp_cell_linear.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/align/dp_formula.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/align/dp_formula_affine.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/align/dp_formula_linear.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/align/dp_matrix.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/align/dp_matrix_navigator.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/align/dp_matrix_navigator_score_matrix.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/align/dp_matrix_navigator_score_matrix_sparse.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/align/dp_matrix_navigator_trace_matrix.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/align/dp_matrix_sparse.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/align/dp_meta_info.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/align/dp_profile.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/align/dp_scout.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/align/dp_setup.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/align/dp_trace_segment.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/align/dp_traceback_adaptor.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/align/dp_traceback_impl.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/align/gap_anchor.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/align/gapped_value_type.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/align/gaps_anchor.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/align/gaps_array.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/align/gaps_base.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/align/gaps_iterator_anchor.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/align/gaps_iterator_array.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/align/gaps_iterator_base.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/align/global_alignment_banded.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/align/global_alignment_hirschberg_impl.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/align/global_alignment_myers_hirschberg_impl.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/align/global_alignment_myers_impl.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/align/global_alignment_specialized.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/align/global_alignment_unbanded.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/align/local_alignment_banded.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/align/local_alignment_enumeration.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/align/local_alignment_enumeration_banded.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/align/local_alignment_enumeration_unbanded.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/align/local_alignment_unbanded.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/align/local_alignment_waterman_eggert_impl.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/align/matrix_base.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/bam_io.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/bam_io/bam_alignment_record.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/bam_io/bam_alignment_record_util.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/bam_io/bam_header_record.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/bam_io/bam_index_bai.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/bam_io/bam_index_base.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/bam_io/bam_io_context.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/bam_io/bam_reader.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/bam_io/bam_sam_conversion.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/bam_io/bam_stream.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/bam_io/bam_tags_dict.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/bam_io/bam_writer.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/bam_io/cigar.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/bam_io/read_bam.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/bam_io/read_sam.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/bam_io/sam_reader.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/bam_io/sam_writer.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/bam_io/write_bam.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/bam_io/write_sam.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/bam_io/xam_reader.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/bam_io/xam_writer.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/aggregate_concept.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/allocator_chunkpool.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/allocator_interface.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/allocator_multipool.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/allocator_simple.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/allocator_singlepool.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/allocator_to_std.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/alphabet_adapt_builtins.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/alphabet_bio.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/alphabet_concept.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/alphabet_math.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/alphabet_profile.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/alphabet_qualities.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/alphabet_residue.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/alphabet_residue_tabs.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/alphabet_simple_type.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/alphabet_storage.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/array_construct_destruct.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/basic_aggregate.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/basic_allocator.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/basic_alphabet.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/basic_concept.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/basic_container.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/basic_debug.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/basic_fundamental.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/basic_iterator.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/basic_math.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/basic_metaprogramming.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/basic_parallelism.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/basic_proxy.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/basic_smart_pointer.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/basic_tangle.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/basic_type.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/boost_preprocessor_subset.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/builtin_functions.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/concept_checking.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/container_concept.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/debug_helper.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/debug_test_system.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/fundamental_comparison.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/fundamental_concepts.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/fundamental_conversion.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/fundamental_metafunctions.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/fundamental_tags.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/fundamental_transport.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/holder_base.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/holder_simple.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/holder_tristate.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/hosted_type_interface.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/iterator_adapt_pointer.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/iterator_adapt_std.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/iterator_adaptor.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/iterator_base.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/iterator_concept.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/iterator_interface.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/iterator_position.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/macro_deprecated.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/math_functions.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/math_log_space_value.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/metaprogramming_control.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/metaprogramming_enable_if.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/metaprogramming_logic.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/metaprogramming_math.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/metaprogramming_type.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/pair_base.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/pair_bit_compressed.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/pair_packed.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/profiling.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/proxy_base.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/proxy_iterator.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/test_system.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/triple_base.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/triple_packed.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/tuple_base.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/tuple_bit_compressed.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/basic/volatile_ptr.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/file.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/file/chunk_collector.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/file/cstream.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/file/file_base.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/file/file_cstyle.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/file/file_filereader.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/file/file_filereaderiterator.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/file/file_format.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/file/file_format_cgviz.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/file/file_format_embl.h
Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/file/file_format_fasta.h
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Examining data/khmer-2.1.2+dfsg/third-party/seqan/core/include/seqan/file/file_format_genbank.h
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