Flawfinder version 2.0.10, (C) 2001-2019 David A. Wheeler. Number of rules (primarily dangerous function names) in C/C++ ruleset: 223 Examining data/last-align-1145/src/AlignmentWrite.cc Examining data/last-align-1145/src/alp/njn_root.hpp Examining data/last-align-1145/src/alp/njn_localmaxstatutil.hpp Examining data/last-align-1145/src/alp/sls_fsa1.cpp Examining data/last-align-1145/src/alp/sls_fsa1_parameters.hpp Examining data/last-align-1145/src/alp/sls_alp_sim.hpp Examining data/last-align-1145/src/alp/sls_alp.hpp Examining data/last-align-1145/src/alp/sls_alp_regression.hpp Examining data/last-align-1145/src/alp/sls_fsa1_utils.hpp Examining data/last-align-1145/src/alp/sls_fsa1.hpp Examining data/last-align-1145/src/alp/njn_localmaxstatmatrix.hpp Examining data/last-align-1145/src/alp/njn_doubletype.hpp Examining data/last-align-1145/src/alp/sls_basic.hpp Examining data/last-align-1145/src/alp/sls_alp.cpp Examining data/last-align-1145/src/alp/sls_falp_alignment_evaluer.hpp Examining data/last-align-1145/src/alp/njn_random.hpp Examining data/last-align-1145/src/alp/sls_pvalues.hpp