Flawfinder version 2.0.10, (C) 2001-2019 David A. Wheeler.
Number of rules (primarily dangerous function names) in C/C++ ruleset: 223
Examining data/last-align-1145/src/AlignmentWrite.cc
Examining data/last-align-1145/src/alp/njn_root.hpp
Examining data/last-align-1145/src/alp/njn_localmaxstatutil.hpp
Examining data/last-align-1145/src/alp/sls_fsa1.cpp
Examining data/last-align-1145/src/alp/sls_fsa1_parameters.hpp
Examining data/last-align-1145/src/alp/sls_alp_sim.hpp
Examining data/last-align-1145/src/alp/sls_alp.hpp
Examining data/last-align-1145/src/alp/sls_alp_regression.hpp
Examining data/last-align-1145/src/alp/sls_fsa1_utils.hpp
Examining data/last-align-1145/src/alp/sls_fsa1.hpp
Examining data/last-align-1145/src/alp/njn_localmaxstatmatrix.hpp
Examining data/last-align-1145/src/alp/njn_doubletype.hpp
Examining data/last-align-1145/src/alp/sls_basic.hpp
Examining data/last-align-1145/src/alp/sls_alp.cpp
Examining data/last-align-1145/src/alp/sls_falp_alignment_evaluer.hpp
Examining data/last-align-1145/src/alp/njn_random.hpp
Examining data/last-align-1145/src/alp/sls_pvalues.hpp