Flawfinder version 2.0.10, (C) 2001-2019 David A. Wheeler.
Number of rules (primarily dangerous function names) in C/C++ ruleset: 223
Examining data/libbpp-phyl-omics-2.4.1/src/Bpp/Seq/Io/Maf/AbstractDistanceEstimationMafIterator.h
Examining data/libbpp-phyl-omics-2.4.1/src/Bpp/Seq/Io/Maf/AbstractPhylogenyReconstructionMafIterator.h
Examining data/libbpp-phyl-omics-2.4.1/src/Bpp/Seq/Io/Maf/CountClustersMafStatistics.cpp
Examining data/libbpp-phyl-omics-2.4.1/src/Bpp/Seq/Io/Maf/CountClustersMafStatistics.h
Examining data/libbpp-phyl-omics-2.4.1/src/Bpp/Seq/Io/Maf/CountDistanceEstimationMafIterator.cpp
Examining data/libbpp-phyl-omics-2.4.1/src/Bpp/Seq/Io/Maf/CountDistanceEstimationMafIterator.h
Examining data/libbpp-phyl-omics-2.4.1/src/Bpp/Seq/Io/Maf/DistanceBasedPhylogenyReconstructionMafIterator.cpp
Examining data/libbpp-phyl-omics-2.4.1/src/Bpp/Seq/Io/Maf/DistanceBasedPhylogenyReconstructionMafIterator.h
Examining data/libbpp-phyl-omics-2.4.1/src/Bpp/Seq/Io/Maf/FilterTreeMafIterator.cpp
Examining data/libbpp-phyl-omics-2.4.1/src/Bpp/Seq/Io/Maf/FilterTreeMafIterator.h
Examining data/libbpp-phyl-omics-2.4.1/src/Bpp/Seq/Io/Maf/MaximumLikelihoodDistanceEstimationMafIterator.cpp
Examining data/libbpp-phyl-omics-2.4.1/src/Bpp/Seq/Io/Maf/MaximumLikelihoodDistanceEstimationMafIterator.h
Examining data/libbpp-phyl-omics-2.4.1/src/Bpp/Seq/Io/Maf/MaximumLikelihoodModelFitMafStatistics.cpp
Examining data/libbpp-phyl-omics-2.4.1/src/Bpp/Seq/Io/Maf/MaximumLikelihoodModelFitMafStatistics.h
Examining data/libbpp-phyl-omics-2.4.1/src/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.cpp
Examining data/libbpp-phyl-omics-2.4.1/src/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.h
Examining data/libbpp-phyl-omics-2.4.1/src/Bpp/Seq/Io/Maf/OutputTreeMafIterator.cpp
Examining data/libbpp-phyl-omics-2.4.1/src/Bpp/Seq/Io/Maf/OutputTreeMafIterator.h
Examining data/libbpp-phyl-omics-2.4.1/src/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.cpp
Examining data/libbpp-phyl-omics-2.4.1/src/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.h

FINAL RESULTS:


ANALYSIS SUMMARY:

No hits found.
Lines analyzed = 2014 in approximately 0.17 seconds (12064 lines/second)
Physical Source Lines of Code (SLOC) = 867
Hits@level = [0]   0 [1]   0 [2]   0 [3]   0 [4]   0 [5]   0
Hits@level+ = [0+]   0 [1+]   0 [2+]   0 [3+]   0 [4+]   0 [5+]   0
Hits/KSLOC@level+ = [0+]   0 [1+]   0 [2+]   0 [3+]   0 [4+]   0 [5+]   0
Dot directories skipped = 1 (--followdotdir overrides)
Minimum risk level = 1
There may be other security vulnerabilities; review your code!
See 'Secure Programming HOWTO'
(https://dwheeler.com/secure-programs) for more information.