Flawfinder version 2.0.10, (C) 2001-2019 David A. Wheeler.
Number of rules (primarily dangerous function names) in C/C++ ruleset: 223
Examining data/paml-4.9j+dfsg/Technical/Pt/testPMat.c
Examining data/paml-4.9j+dfsg/Technical/Simulation/Codon/PositiveSites.c
Examining data/paml-4.9j+dfsg/Technical/Simulation/multiruns.c
Examining data/paml-4.9j+dfsg/src/BFdriver.c
Examining data/paml-4.9j+dfsg/src/TreeTimeJeff.c
Examining data/paml-4.9j+dfsg/src/baseml.c
Examining data/paml-4.9j+dfsg/src/basemlg.c
Examining data/paml-4.9j+dfsg/src/chi2.c
Examining data/paml-4.9j+dfsg/src/codeml.c
Examining data/paml-4.9j+dfsg/src/ds.c
Examining data/paml-4.9j+dfsg/src/evolver.c
Examining data/paml-4.9j+dfsg/src/mcmctree.c
Examining data/paml-4.9j+dfsg/src/pamp.c
Examining data/paml-4.9j+dfsg/src/tools.c