Flawfinder version 2.0.10, (C) 2001-2019 David A. Wheeler.
Number of rules (primarily dangerous function names) in C/C++ ruleset: 223
Examining data/seqan-1.4.2+dfsg/core/apps/stellar/stellar.cpp
Examining data/seqan-1.4.2+dfsg/core/apps/stellar/stellar.h
Examining data/seqan-1.4.2+dfsg/core/apps/stellar/stellar_extension.h
Examining data/seqan-1.4.2+dfsg/core/apps/stellar/stellar_output.h
Examining data/seqan-1.4.2+dfsg/core/apps/stellar/stellar_types.h
Examining data/seqan-1.4.2+dfsg/core/demos/align/align.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/align/compute_alignment_stats.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/align/gaps_example.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/align/global_alignment_banded.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/align/global_alignment_unbanded.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/align/integrate_align.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/align_gaps_clipping.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/alignment.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/alignment_local.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/alignment_msa.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/allocator.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/alphabet.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/annotation_converter.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/arg_align.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/arg_parse/argument_parser.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/bam_io/bam_stream.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/basic/enable_if.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/basic/metaprogramming_control.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/basic/metaprogramming_logic.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/basic/metaprogramming_math.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/basic/metaprogramming_switch.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/benchmark_stream.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/benchmark_stream_write.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/file_format.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/file_readwrite.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/file_speed.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/filter_sam.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/find/finder_aho_corasick.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/find/finder_index.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/find/finder_online.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/find_approx.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/find_exact.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/find_wild.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/gff2gtf.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/gff_io/gff_stream_read.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/graph/graph_algo_dijkstra.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/graph_algorithms/all_pairs_shortest_path.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/graph_algorithms/bellman_ford_algorithm.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/graph_algorithms/breadth_first_search.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/graph_algorithms/dag_shortest_path.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/graph_algorithms/depth_first_search.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/graph_algorithms/dijkstra.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/graph_algorithms/floyd_warshall_algorithm.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/graph_algorithms/ford_fulkerson_algorithm.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/graph_algorithms/heaviest_increasing_subsequence.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/graph_algorithms/kruskals_algorithm.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/graph_algorithms/longest_common_subsequence.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/graph_algorithms/longest_increasing_subsequence.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/graph_algorithms/prims_algorithm.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/graph_algorithms/strongly_connected_components.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/graph_algorithms/topological_sort.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/graph_algorithms/transitive_closure.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/graph_align/graph_align.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/graph_hmm.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/graph_hmm_silent.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/howto/clip_alignments.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/howto/cmdparser_example.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/howto/efficiently_import_sequences.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/howto/filter_similar_sequences.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/howto/scores/init_score.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/howto/scores/load_score.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/index/find_repeats.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/index/index_begin_atEnd_representative.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/index/index_begin_atEnd_representative_bottomUp.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/index/index_begin_range_goDown_representative_repLength.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/index/index_counting.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/index/index_finder.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/index/index_getOccurrences_getFrequency_range_getFibre.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/index/index_iterator.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/index/index_iterator_short.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/index/index_length_countSequences.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/index/index_mummy.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/index/index_mums.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/index/index_node_predicate.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/index/index_open_save.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/index/index_qgram.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/index/index_supermaxrepeats.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/index/index_textAt_indexText_saAt_indexRequire.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/index/shape.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/index/shape_hash.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/index/shape_hash_init.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/index/shape_hash_next.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/index_counting.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/index_find.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/index_find_stringset.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/index_lcp.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/index_maxrepeats.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/index_mummy.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/index_mums.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/index_node_predicate.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/index_qgram_counts.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/index_sufarray.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/index_supermaxrepeats.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/input_output/record_reader.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/interval_tree.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/iterator.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/knime_node.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/misc/enumerate_strings.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/misc/get_terminal_size.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/misc/interval_tree_example.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/modifier/modified_string.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/modifier/modified_string_mod_view.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/modifier/modified_string_nested.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/modifier_modreverse.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/modifier_modview.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/modifier_nested.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/parallel/splitter_example.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/pipe/pool_sorter.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/random/random.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/rooted_iterator.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/sam2svg.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/sample_seqs.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/score/score.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/seeds.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/seeds/seeds_add_seed.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/seeds/seeds_chaining.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/seeds/seeds_extension.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/segmentalignment.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/seq_io/fai_index_example.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/seq_io/sequence_stream_read.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/seq_io/sequence_stream_write.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/sequence/infix.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/sequence/prefix.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/sequence/segment.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/sequence/string.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/sequence/string2.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/sequence/stringset.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/sequence/suffix.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/sequence_length.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/soft_to_hard_masking.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/store/store_example.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/alignment2_align.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/alignment_align_assignment1.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/alignment_banded.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/alignment_gaps.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/alignment_global_assignment1.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/alignment_global_assignment2.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/alignment_global_assignment3.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/alignment_global_assignment4_part1.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/alignment_global_assignment4_part2.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/alignment_global_overlap.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/alignment_global_specialised.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/alignment_global_standard.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/alignment_local_standard.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/alignment_local_waterman_eggert.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/alignment_msa.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/alignment_msa_assignment1.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/alignment_pairwise_global.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/alignment_pairwise_global2.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/alignment_pairwise_global_assignment1.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/alignment_pairwise_global_assignment2.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/alignment_pairwise_local.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/alignment_pairwise_local_assignment1.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/alignment_representation_ag.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/alignment_representation_ag_assignment1.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/pairwise_sequence_alignment_assignment5.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/pairwise_sequence_alignment_assignment5_step1.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/pairwise_sequence_alignment_assignment5_step2.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/pairwise_sequence_alignment_assignment5_step3.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/pairwise_sequence_alignment_assignment5_step4.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/pairwise_sequence_alignment_assignment5_step5.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/pairwise_sequence_alignment_assignment5_step6.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/alphabets/alphabet_assignment_1_solution.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/annotation_store/assignment_1_hint.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/annotation_store/assignment_1_solution.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/annotation_store/assignment_2_solution.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/annotation_store/assignment_3_solution.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/annotation_store/assignment_4_solution.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/basics/allocator.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/basics/show_alphabets.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/basics/strings.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/basics/swap.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/find/find_approx.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/find/find_assignment1.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/find/find_assignment1_solution.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/find/find_assignment2.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/find/find_assignment2_solution.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/find/find_assignment3.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/find/find_assignment3_solution.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/find/find_exact.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/find/find_index.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/find/find_index_multiple.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/generic_programming/template_subclassing.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/graph/graph_algo_scc.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/graph/graph_dijkstra.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/graph/graph_hmm.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/graph/solution_1.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/index/index_assignment1.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/index/index_assignment2.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/index/index_assignment3.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/index/index_assignment4.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/index/index_assignment5.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/index/index_assignment6.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/index/index_preorder.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/index/index_property_maps.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/index/index_qgram.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/index/index_qgram_hash.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/index/index_search.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/index/index_search2.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/index/indices_assignment_1.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/index/indices_assignment_2.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/index/iterator_solution1.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/index/iterator_solution2.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/iterators/iterators_assignment_1_solution.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/iterators/iterators_assignment_2_solution.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/iterators/iterators_assignment_3_workshop_solution.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/iterators/iterators_assignment_4_workshop_solution.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/iterators/sequence_iterator_demo.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/lexical_casting/solution1.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/modifiers/assignment1.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/modifiers/assignment1_solution.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/modifiers/modifier_modcomplementdna.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/modifiers/modifier_modreverse.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/modifiers/modifier_modview.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/modifiers/modifier_nested.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/random/random_examples.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/read_mapping/minimapper.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/rnaseq/genequant_assignment1.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/rnaseq/genequant_assignment2.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/rnaseq/genequant_assignment3.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/rnaseq/genequant_assignment4.cpp
Examining data/seqan-1.4.2+dfsg/core/demos/tutorial/rnaseq/genequant_assignment5.cpp
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