Flawfinder version 2.0.10, (C) 2001-2019 David A. Wheeler.
Number of rules (primarily dangerous function names) in C/C++ ruleset: 223
Examining data/sra-sdk-2.10.7+dfsg/build/Makefile.cc
Examining data/sra-sdk-2.10.7+dfsg/shared/toolkit.vers.c
Examining data/sra-sdk-2.10.7+dfsg/shared/toolkit.vers.h
Examining data/sra-sdk-2.10.7+dfsg/test/fastq-loader/test-id2name.cpp
Examining data/sra-sdk-2.10.7+dfsg/test/fastq-loader/wb-test-fastq-parse.cpp
Examining data/sra-sdk-2.10.7+dfsg/test/fastq-loader/wb-test-fastq.cpp
Examining data/sra-sdk-2.10.7+dfsg/test/fastq-loader/test-fastq-loader.cpp
Examining data/sra-sdk-2.10.7+dfsg/test/fuse/remote-fuser-test.c
Examining data/sra-sdk-2.10.7+dfsg/test/fuse/remote-fuser-test.vers.h
Examining data/sra-sdk-2.10.7+dfsg/test/fuse/utils.c
Examining data/sra-sdk-2.10.7+dfsg/test/fuse/utils.h
Examining data/sra-sdk-2.10.7+dfsg/test/network-test/network-test.c
Examining data/sra-sdk-2.10.7+dfsg/test/network-test/network-testing.c
Examining data/sra-sdk-2.10.7+dfsg/test/network-test/network-testing.h
Examining data/sra-sdk-2.10.7+dfsg/test/ngs-pileup/test-ngs-pileup.cpp
Examining data/sra-sdk-2.10.7+dfsg/test/samline/alig-gen.c
Examining data/sra-sdk-2.10.7+dfsg/test/samline/cigar.c
Examining data/sra-sdk-2.10.7+dfsg/test/samline/cigar.h
Examining data/sra-sdk-2.10.7+dfsg/test/samline/refbases.c
Examining data/sra-sdk-2.10.7+dfsg/test/samline/refbases.h
Examining data/sra-sdk-2.10.7+dfsg/test/samline/sampart.c
Examining data/sra-sdk-2.10.7+dfsg/test/sra-stat/testAssemblyStatistics.cpp
Examining data/sra-sdk-2.10.7+dfsg/test/tui-example/example_0.cpp
Examining data/sra-sdk-2.10.7+dfsg/test/tui-example/example_1.cpp
Examining data/sra-sdk-2.10.7+dfsg/test/tui-example/example_10.cpp
Examining data/sra-sdk-2.10.7+dfsg/test/tui-example/example_2.cpp
Examining data/sra-sdk-2.10.7+dfsg/test/tui-example/example_3.cpp
Examining data/sra-sdk-2.10.7+dfsg/test/tui-example/example_4.cpp
Examining data/sra-sdk-2.10.7+dfsg/test/tui-example/example_5.cpp
Examining data/sra-sdk-2.10.7+dfsg/test/tui-example/example_6.cpp
Examining data/sra-sdk-2.10.7+dfsg/test/tui-example/example_7.cpp
Examining data/sra-sdk-2.10.7+dfsg/test/tui-example/example_8.cpp
Examining data/sra-sdk-2.10.7+dfsg/test/tui-example/example_9.cpp
Examining data/sra-sdk-2.10.7+dfsg/test/tui-example/tui_examples.cpp
Examining data/sra-sdk-2.10.7+dfsg/test/vcf-loader/test-vcf-loader.cpp
Examining data/sra-sdk-2.10.7+dfsg/test/vdb-config/test-vdb-config-model.cpp
Examining data/sra-sdk-2.10.7+dfsg/test/vdb-dump/makedb.cpp
Examining data/sra-sdk-2.10.7+dfsg/tools/align-cache/align-cache.cpp
Examining data/sra-sdk-2.10.7+dfsg/tools/align-cache/helper.cpp
Examining data/sra-sdk-2.10.7+dfsg/tools/align-cache/helper.h
Examining data/sra-sdk-2.10.7+dfsg/tools/align-info/align-info.c
Examining data/sra-sdk-2.10.7+dfsg/tools/bam-loader/Globals.h
Examining data/sra-sdk-2.10.7+dfsg/tools/bam-loader/KFileHelper.c
Examining data/sra-sdk-2.10.7+dfsg/tools/bam-loader/KFileHelper.h
Examining data/sra-sdk-2.10.7+dfsg/tools/bam-loader/KVPFile.c
Examining data/sra-sdk-2.10.7+dfsg/tools/bam-loader/KVPFile.h
Examining data/sra-sdk-2.10.7+dfsg/tools/bam-loader/alignment-writer.c
Examining data/sra-sdk-2.10.7+dfsg/tools/bam-loader/alignment-writer.h
Examining data/sra-sdk-2.10.7+dfsg/tools/bam-loader/analysis.c
Examining data/sra-sdk-2.10.7+dfsg/tools/bam-loader/analysis.h
Examining data/sra-sdk-2.10.7+dfsg/tools/bam-loader/bam-alignment.h
Examining data/sra-sdk-2.10.7+dfsg/tools/bam-loader/bam-priv.h
Examining data/sra-sdk-2.10.7+dfsg/tools/bam-loader/bam-reader.c
Examining data/sra-sdk-2.10.7+dfsg/tools/bam-loader/bam-reader.h
Examining data/sra-sdk-2.10.7+dfsg/tools/bam-loader/bam.c
Examining data/sra-sdk-2.10.7+dfsg/tools/bam-loader/bam.h
Examining data/sra-sdk-2.10.7+dfsg/tools/bam-loader/config-file.cpp
Examining data/sra-sdk-2.10.7+dfsg/tools/bam-loader/config-file.hpp
Examining data/sra-sdk-2.10.7+dfsg/tools/bam-loader/fasta-file.cpp
Examining data/sra-sdk-2.10.7+dfsg/tools/bam-loader/fasta-file.hpp
Examining data/sra-sdk-2.10.7+dfsg/tools/bam-loader/hashtable.c
Examining data/sra-sdk-2.10.7+dfsg/tools/bam-loader/hashtable.h
Examining data/sra-sdk-2.10.7+dfsg/tools/bam-loader/loader-imp.c
Examining data/sra-sdk-2.10.7+dfsg/tools/bam-loader/loader-imp.h
Examining data/sra-sdk-2.10.7+dfsg/tools/bam-loader/low-match-count.cpp
Examining data/sra-sdk-2.10.7+dfsg/tools/bam-loader/low-match-count.h
Examining data/sra-sdk-2.10.7+dfsg/tools/bam-loader/mate-distance-stats.cpp
Examining data/sra-sdk-2.10.7+dfsg/tools/bam-loader/mate-distance-stats.hpp
Examining data/sra-sdk-2.10.7+dfsg/tools/bam-loader/mem-bank.cpp
Examining data/sra-sdk-2.10.7+dfsg/tools/bam-loader/mem-bank.h
Examining data/sra-sdk-2.10.7+dfsg/tools/bam-loader/quality-quantizer.cpp
Examining data/sra-sdk-2.10.7+dfsg/tools/bam-loader/quality-quantizer.hpp
Examining data/sra-sdk-2.10.7+dfsg/tools/bam-loader/reference-writer.c
Examining data/sra-sdk-2.10.7+dfsg/tools/bam-loader/reference-writer.h
Examining data/sra-sdk-2.10.7+dfsg/tools/bam-loader/sam.c
Examining data/sra-sdk-2.10.7+dfsg/tools/bam-loader/sam.h
Examining data/sra-sdk-2.10.7+dfsg/tools/bam-loader/samview.c
Examining data/sra-sdk-2.10.7+dfsg/tools/bam-loader/sequence-writer.c
Examining data/sra-sdk-2.10.7+dfsg/tools/bam-loader/sequence-writer.h
Examining data/sra-sdk-2.10.7+dfsg/tools/bam-loader/bam-loader.c
Examining data/sra-sdk-2.10.7+dfsg/tools/build-sra-toolkit-Desktop_Qt_5_9_2_clang_64bit-Debug/moc_diagnosticsthread.cpp
Examining data/sra-sdk-2.10.7+dfsg/tools/build-sra-toolkit-Desktop_Qt_5_9_2_clang_64bit-Debug/moc_diagnosticsview.cpp
Examining data/sra-sdk-2.10.7+dfsg/tools/build-sra-toolkit-Desktop_Qt_5_9_2_clang_64bit-Debug/moc_predefs.h
Examining data/sra-sdk-2.10.7+dfsg/tools/build-sra-toolkit-Desktop_Qt_5_9_2_clang_64bit-Debug/moc_sraconfigmodel.cpp
Examining data/sra-sdk-2.10.7+dfsg/tools/build-sra-toolkit-Desktop_Qt_5_9_2_clang_64bit-Debug/moc_sraconfigview.cpp
Examining data/sra-sdk-2.10.7+dfsg/tools/build-sra-toolkit-Desktop_Qt_5_9_2_clang_64bit-Debug/moc_sradiagnosticsview.cpp
Examining data/sra-sdk-2.10.7+dfsg/tools/build-sra-toolkit-Desktop_Qt_5_9_2_clang_64bit-Debug/moc_sratoolbar.cpp
Examining data/sra-sdk-2.10.7+dfsg/tools/build-sra-toolkit-Desktop_Qt_5_9_2_clang_64bit-Debug/moc_sratoolkit.cpp
Examining data/sra-sdk-2.10.7+dfsg/tools/build-sra-toolkit-Desktop_Qt_5_9_2_clang_64bit-Debug/moc_sratoolkitpreferences.cpp
Examining data/sra-sdk-2.10.7+dfsg/tools/build-sra-toolkit-Desktop_Qt_5_9_2_clang_64bit-Debug/moc_sratoolview.cpp
Examining data/sra-sdk-2.10.7+dfsg/tools/build-sra-toolkit-Desktop_Qt_5_9_2_clang_64bit-Debug/moc_sraworkspace.cpp
Examining data/sra-sdk-2.10.7+dfsg/tools/build-sra-toolkit-Desktop_Qt_5_9_2_clang_64bit-Debug/qrc_resources.cpp
Examining data/sra-sdk-2.10.7+dfsg/tools/build-sra-toolkit-gui-Desktop_Qt_5_9_2_clang_64bit-Debug/moc_diagnosticsthread.cpp
Examining data/sra-sdk-2.10.7+dfsg/tools/build-sra-toolkit-gui-Desktop_Qt_5_9_2_clang_64bit-Debug/moc_diagnosticsview.cpp
Examining data/sra-sdk-2.10.7+dfsg/tools/build-sra-toolkit-gui-Desktop_Qt_5_9_2_clang_64bit-Debug/moc_predefs.h
Examining data/sra-sdk-2.10.7+dfsg/tools/build-sra-toolkit-gui-Desktop_Qt_5_9_2_clang_64bit-Debug/moc_sraconfigmodel.cpp
Examining data/sra-sdk-2.10.7+dfsg/tools/build-sra-toolkit-gui-Desktop_Qt_5_9_2_clang_64bit-Debug/moc_sraconfigview.cpp
Examining data/sra-sdk-2.10.7+dfsg/tools/build-sra-toolkit-gui-Desktop_Qt_5_9_2_clang_64bit-Debug/moc_sradiagnosticsview.cpp
Examining data/sra-sdk-2.10.7+dfsg/tools/build-sra-toolkit-gui-Desktop_Qt_5_9_2_clang_64bit-Debug/moc_sratoolbar.cpp
Examining data/sra-sdk-2.10.7+dfsg/tools/build-sra-toolkit-gui-Desktop_Qt_5_9_2_clang_64bit-Debug/moc_sratoolkit.cpp
Examining data/sra-sdk-2.10.7+dfsg/tools/build-sra-toolkit-gui-Desktop_Qt_5_9_2_clang_64bit-Debug/moc_sratoolkitpreferences.cpp
Examining data/sra-sdk-2.10.7+dfsg/tools/build-sra-toolkit-gui-Desktop_Qt_5_9_2_clang_64bit-Debug/moc_sratoolview.cpp
Examining data/sra-sdk-2.10.7+dfsg/tools/build-sra-toolkit-gui-Desktop_Qt_5_9_2_clang_64bit-Debug/moc_sraworkspace.cpp
Examining data/sra-sdk-2.10.7+dfsg/tools/build-sra-toolkit-gui-Desktop_Qt_5_9_2_clang_64bit-Debug/qrc_resources.cpp
Examining data/sra-sdk-2.10.7+dfsg/tools/cache-mgr/cache-mgr.c
Examining data/sra-sdk-2.10.7+dfsg/tools/ccextract/ccextract.c
Examining data/sra-sdk-2.10.7+dfsg/tools/cg-load/debug.h
Examining data/sra-sdk-2.10.7+dfsg/tools/cg-load/defs.h
Examining data/sra-sdk-2.10.7+dfsg/tools/cg-load/f1_3.c
Examining data/sra-sdk-2.10.7+dfsg/tools/cg-load/f1_5.c
Examining data/sra-sdk-2.10.7+dfsg/tools/cg-load/f1_7.c
Examining data/sra-sdk-2.10.7+dfsg/tools/cg-load/f2_0.c
Examining data/sra-sdk-2.10.7+dfsg/tools/cg-load/f2_2.c
Examining data/sra-sdk-2.10.7+dfsg/tools/cg-load/f2_4.c
Examining data/sra-sdk-2.10.7+dfsg/tools/cg-load/f2_5.c
Examining data/sra-sdk-2.10.7+dfsg/tools/cg-load/factory-cmn.h
Examining data/sra-sdk-2.10.7+dfsg/tools/cg-load/factory-evidence-dnbs.c
Examining data/sra-sdk-2.10.7+dfsg/tools/cg-load/factory-evidence-dnbs.h
Examining data/sra-sdk-2.10.7+dfsg/tools/cg-load/factory-evidence-intervals.c
Examining data/sra-sdk-2.10.7+dfsg/tools/cg-load/factory-evidence-intervals.h
Examining data/sra-sdk-2.10.7+dfsg/tools/cg-load/factory-file.h
Examining data/sra-sdk-2.10.7+dfsg/tools/cg-load/factory-mappings.c
Examining data/sra-sdk-2.10.7+dfsg/tools/cg-load/factory-mappings.h
Examining data/sra-sdk-2.10.7+dfsg/tools/cg-load/factory-reads.c
Examining data/sra-sdk-2.10.7+dfsg/tools/cg-load/factory-reads.h
Examining data/sra-sdk-2.10.7+dfsg/tools/cg-load/factory-tag-lfr.c
Examining data/sra-sdk-2.10.7+dfsg/tools/cg-load/factory-tag-lfr.h
Examining data/sra-sdk-2.10.7+dfsg/tools/cg-load/file-version-factory.c
Examining data/sra-sdk-2.10.7+dfsg/tools/cg-load/file.c
Examining data/sra-sdk-2.10.7+dfsg/tools/cg-load/file.h
Examining data/sra-sdk-2.10.7+dfsg/tools/cg-load/formats.c
Examining data/sra-sdk-2.10.7+dfsg/tools/cg-load/formats.h
Examining data/sra-sdk-2.10.7+dfsg/tools/cg-load/writer-algn.c
Examining data/sra-sdk-2.10.7+dfsg/tools/cg-load/writer-algn.h
Examining data/sra-sdk-2.10.7+dfsg/tools/cg-load/writer-evidence-dnbs.c
Examining data/sra-sdk-2.10.7+dfsg/tools/cg-load/writer-evidence-dnbs.h
Examining data/sra-sdk-2.10.7+dfsg/tools/cg-load/writer-evidence-intervals.c
Examining data/sra-sdk-2.10.7+dfsg/tools/cg-load/writer-evidence-intervals.h
Examining data/sra-sdk-2.10.7+dfsg/tools/cg-load/writer-seq.c
Examining data/sra-sdk-2.10.7+dfsg/tools/cg-load/writer-seq.h
Examining data/sra-sdk-2.10.7+dfsg/tools/cg-load/cg-load.c
Examining data/sra-sdk-2.10.7+dfsg/tools/copycat/ccbuffer.c
Examining data/sra-sdk-2.10.7+dfsg/tools/copycat/ccbuffermgr.c
Examining data/sra-sdk-2.10.7+dfsg/tools/copycat/ccbufferq.c
Examining data/sra-sdk-2.10.7+dfsg/tools/copycat/cccat.c
Examining data/sra-sdk-2.10.7+dfsg/tools/copycat/cccopier.c
Examining data/sra-sdk-2.10.7+dfsg/tools/copycat/cccopy.c
Examining data/sra-sdk-2.10.7+dfsg/tools/copycat/ccfile.c
Examining data/sra-sdk-2.10.7+dfsg/tools/copycat/ccfileformat.c
Examining data/sra-sdk-2.10.7+dfsg/tools/copycat/ccproc.c
Examining data/sra-sdk-2.10.7+dfsg/tools/copycat/ccprocone.c
Examining data/sra-sdk-2.10.7+dfsg/tools/copycat/ccread.c
Examining data/sra-sdk-2.10.7+dfsg/tools/copycat/ccsra.c
Examining data/sra-sdk-2.10.7+dfsg/tools/copycat/ccsubchunk.c
Examining data/sra-sdk-2.10.7+dfsg/tools/copycat/cctar.c
Examining data/sra-sdk-2.10.7+dfsg/tools/copycat/cctree-dump.c
Examining data/sra-sdk-2.10.7+dfsg/tools/copycat/cctree-priv.h
Examining data/sra-sdk-2.10.7+dfsg/tools/copycat/cctree.c
Examining data/sra-sdk-2.10.7+dfsg/tools/copycat/copycat-priv.h
Examining data/sra-sdk-2.10.7+dfsg/tools/copycat/copycat.c
Examining data/sra-sdk-2.10.7+dfsg/tools/copycat/debug.h
Examining data/sra-sdk-2.10.7+dfsg/tools/dbgap-mount/dbgap-mount-tool.c
Examining data/sra-sdk-2.10.7+dfsg/tools/dbgap-mount/dbgap-mount-tool.h
Examining data/sra-sdk-2.10.7+dfsg/tools/dbgap-mount/demo.c
Examining data/sra-sdk-2.10.7+dfsg/tools/dbgap-mount/unix/wrap.c
Examining data/sra-sdk-2.10.7+dfsg/tools/dbgap-mount/uu.h
Examining data/sra-sdk-2.10.7+dfsg/tools/dbgap-mount/win/wrap.c
Examining data/sra-sdk-2.10.7+dfsg/tools/dbgap-mount/z-pad.c
Examining data/sra-sdk-2.10.7+dfsg/tools/driver-tool/cleanup-jwt-tool.cpp
Examining data/sra-sdk-2.10.7+dfsg/tools/driver-tool/cmdline-tst.cpp
Examining data/sra-sdk-2.10.7+dfsg/tools/driver-tool/cmdline.cpp
Examining data/sra-sdk-2.10.7+dfsg/tools/driver-tool/cmdline.hpp
Examining data/sra-sdk-2.10.7+dfsg/tools/driver-tool/config.cpp
Examining data/sra-sdk-2.10.7+dfsg/tools/driver-tool/config.hpp
Examining data/sra-sdk-2.10.7+dfsg/tools/driver-tool/constants.hpp
Examining data/sra-sdk-2.10.7+dfsg/tools/driver-tool/debug.hpp
Examining data/sra-sdk-2.10.7+dfsg/tools/driver-tool/env.cpp
Examining data/sra-sdk-2.10.7+dfsg/tools/driver-tool/env.hpp
Examining data/sra-sdk-2.10.7+dfsg/tools/driver-tool/env_vars.h
Examining data/sra-sdk-2.10.7+dfsg/tools/driver-tool/exec-jwt-tool.cpp
Examining data/sra-sdk-2.10.7+dfsg/tools/driver-tool/fastq-dump.cpp
Examining data/sra-sdk-2.10.7+dfsg/tools/driver-tool/fastq-dump.hpp
Examining data/sra-sdk-2.10.7+dfsg/tools/driver-tool/fmt.cpp
Examining data/sra-sdk-2.10.7+dfsg/tools/driver-tool/fmt.hpp
Examining data/sra-sdk-2.10.7+dfsg/tools/driver-tool/globals.hpp
Examining data/sra-sdk-2.10.7+dfsg/tools/driver-tool/imp_fasterq_dump.cpp
Examining data/sra-sdk-2.10.7+dfsg/tools/driver-tool/imp_fastq_dump.cpp
Examining data/sra-sdk-2.10.7+dfsg/tools/driver-tool/imp_prefetch.cpp
Examining data/sra-sdk-2.10.7+dfsg/tools/driver-tool/imp_sam_dump.cpp
Examining data/sra-sdk-2.10.7+dfsg/tools/driver-tool/imp_sra_pileup.cpp
Examining data/sra-sdk-2.10.7+dfsg/tools/driver-tool/imp_srapath.cpp
Examining data/sra-sdk-2.10.7+dfsg/tools/driver-tool/imp_vdb_dump.cpp
Examining data/sra-sdk-2.10.7+dfsg/tools/driver-tool/inc/ncbi/json.hpp
Examining data/sra-sdk-2.10.7+dfsg/tools/driver-tool/inc/ncbi/secure/base64.hpp
Examining data/sra-sdk-2.10.7+dfsg/tools/driver-tool/inc/ncbi/secure/busy.hpp
Examining data/sra-sdk-2.10.7+dfsg/tools/driver-tool/inc/ncbi/secure/except.hpp
Examining data/sra-sdk-2.10.7+dfsg/tools/driver-tool/inc/ncbi/secure/payload.hpp
Examining data/sra-sdk-2.10.7+dfsg/tools/driver-tool/inc/ncbi/secure/ref.hpp
Examining data/sra-sdk-2.10.7+dfsg/tools/driver-tool/inc/ncbi/secure/string.hpp
Examining data/sra-sdk-2.10.7+dfsg/tools/driver-tool/inc/ncbi/secure/types.hpp
Examining data/sra-sdk-2.10.7+dfsg/tools/driver-tool/init-jwt-tool.cpp
Examining data/sra-sdk-2.10.7+dfsg/tools/driver-tool/json/json-array.cpp
Examining data/sra-sdk-2.10.7+dfsg/tools/driver-tool/json/json-object.cpp
Examining data/sra-sdk-2.10.7+dfsg/tools/driver-tool/json/json-primitive.cpp
Examining data/sra-sdk-2.10.7+dfsg/tools/driver-tool/json/json-priv.hpp
Examining data/sra-sdk-2.10.7+dfsg/tools/driver-tool/json/json-tst.cpp
Examining data/sra-sdk-2.10.7+dfsg/tools/driver-tool/json/json-value.cpp
Examining data/sra-sdk-2.10.7+dfsg/tools/driver-tool/json/json-wrapper.cpp
Examining data/sra-sdk-2.10.7+dfsg/tools/driver-tool/json/json.cpp
Examining data/sra-sdk-2.10.7+dfsg/tools/driver-tool/jwt-tool.cpp
Examining data/sra-sdk-2.10.7+dfsg/tools/driver-tool/jwt-tool.hpp
Examining data/sra-sdk-2.10.7+dfsg/tools/driver-tool/log-db.cpp
Examining data/sra-sdk-2.10.7+dfsg/tools/driver-tool/log-local.cpp
Examining data/sra-sdk-2.10.7+dfsg/tools/driver-tool/log-protocol.hpp
Examining data/sra-sdk-2.10.7+dfsg/tools/driver-tool/log-proxy.cpp
Examining data/sra-sdk-2.10.7+dfsg/tools/driver-tool/log.cpp
Examining data/sra-sdk-2.10.7+dfsg/tools/driver-tool/logger.cpp
Examining data/sra-sdk-2.10.7+dfsg/tools/driver-tool/logging.hpp
Examining data/sra-sdk-2.10.7+dfsg/tools/driver-tool/opt_string.hpp
Examining data/sra-sdk-2.10.7+dfsg/tools/driver-tool/parse_args.cpp
Examining data/sra-sdk-2.10.7+dfsg/tools/driver-tool/parse_args.hpp
Examining data/sra-sdk-2.10.7+dfsg/tools/driver-tool/proc.cpp
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