===========================================================
.___ __ __
_________________ __ __ __| _/|__|/ |_
/ ___\_` __ \__ \ | | \/ __ | | \\_ __\
/ /_/ > | \// __ \| | / /_/ | | || |
\___ /|__| (____ /____/\____ | |__||__|
/_____/ \/ \/
grep rough audit - static analysis tool
v2.8 written by @Wireghoul
=================================[justanotherhacker.com]===
##############################################
beast2-mcmc-2.6.3+dfsg/examples/parameterised/README.md-5-
beast2-mcmc-2.6.3+dfsg/examples/parameterised/README.md:6:Note that the `$(filebase)` definition is automatically replaced by the base name of the XML file.
beast2-mcmc-2.6.3+dfsg/examples/parameterised/README.md-7-
##############################################
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/applauncher-8- while [ -h "$PRG" ] ; do
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/applauncher:9: ls=`ls -ld "$PRG"`
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/applauncher:10: link=`expr "$ls" : '.*-> \(.*\)$'`
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/applauncher-11- if expr "$link" : '/.*' > /dev/null; then
##############################################
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/applauncher-13- else
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/applauncher:14: PRG="`dirname "$PRG"`/$link"
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/applauncher-15- fi
##############################################
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/applauncher-19- saveddir=`pwd`
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/applauncher:20: BEAST0=`dirname "$PRG"`/..
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/applauncher:21: BEAST=`cd "$BEAST0" && pwd`
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/applauncher-22- cd "$saveddir"
##############################################
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/beast-8- while [ -h "$PRG" ] ; do
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/beast:9: ls=`ls -ld "$PRG"`
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/beast:10: link=`expr "$ls" : '.*-> \(.*\)$'`
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/beast-11- if expr "$link" : '/.*' > /dev/null; then
##############################################
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/beast-13- else
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/beast:14: PRG="`dirname "$PRG"`/$link"
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/beast-15- fi
##############################################
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/beast-19- saveddir=`pwd`
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/beast:20: BEAST0=`dirname "$PRG"`/..
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/beast:21: BEAST=`cd "$BEAST0" && pwd`
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/beast-22- cd "$saveddir"
##############################################
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/beauti-8- while [ -h "$PRG" ] ; do
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/beauti:9: ls=`ls -ld "$PRG"`
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/beauti:10: link=`expr "$ls" : '.*-> \(.*\)$'`
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/beauti-11- if expr "$link" : '/.*' > /dev/null; then
##############################################
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/beauti-13- else
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/beauti:14: PRG="`dirname "$PRG"`/$link"
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/beauti-15- fi
##############################################
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/beauti-19- saveddir=`pwd`
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/beauti:20: BEAST0=`dirname "$PRG"`/..
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/beauti:21: BEAST=`cd "$BEAST0" && pwd`
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/beauti-22- cd "$saveddir"
##############################################
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/densitree-8- while [ -h "$PRG" ] ; do
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/densitree:9: ls=`ls -ld "$PRG"`
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/densitree:10: link=`expr "$ls" : '.*-> \(.*\)$'`
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/densitree-11- if expr "$link" : '/.*' > /dev/null; then
##############################################
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/densitree-13- else
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/densitree:14: PRG="`dirname "$PRG"`/$link"
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/densitree-15- fi
##############################################
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/densitree-19- saveddir=`pwd`
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/densitree:20: BEAST0=`dirname "$PRG"`/..
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/densitree:21: BEAST=`cd "$BEAST0" && pwd`
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/densitree-22- cd "$saveddir"
##############################################
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/loganalyser-8- while [ -h "$PRG" ] ; do
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/loganalyser:9: ls=`ls -ld "$PRG"`
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/loganalyser:10: link=`expr "$ls" : '.*-> \(.*\)$'`
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/loganalyser-11- if expr "$link" : '/.*' > /dev/null; then
##############################################
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/loganalyser-13- else
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/loganalyser:14: PRG="`dirname "$PRG"`/$link"
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/loganalyser-15- fi
##############################################
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/loganalyser-19- saveddir=`pwd`
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/loganalyser:20: BEAST0=`dirname "$PRG"`/..
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/loganalyser:21: BEAST=`cd "$BEAST0" && pwd`
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/loganalyser-22- cd "$saveddir"
##############################################
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/logcombiner-8- while [ -h "$PRG" ] ; do
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/logcombiner:9: ls=`ls -ld "$PRG"`
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/logcombiner:10: link=`expr "$ls" : '.*-> \(.*\)$'`
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/logcombiner-11- if expr "$link" : '/.*' > /dev/null; then
##############################################
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/logcombiner-13- else
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/logcombiner:14: PRG="`dirname "$PRG"`/$link"
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/logcombiner-15- fi
##############################################
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/logcombiner-19- saveddir=`pwd`
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/logcombiner:20: BEAST0=`dirname "$PRG"`/..
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/logcombiner:21: BEAST=`cd "$BEAST0" && pwd`
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/logcombiner-22- cd "$saveddir"
##############################################
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/packagemanager-8- while [ -h "$PRG" ] ; do
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/packagemanager:9: ls=`ls -ld "$PRG"`
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/packagemanager:10: link=`expr "$ls" : '.*-> \(.*\)$'`
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/packagemanager-11- if expr "$link" : '/.*' > /dev/null; then
##############################################
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/packagemanager-13- else
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/packagemanager:14: PRG="`dirname "$PRG"`/$link"
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/packagemanager-15- fi
##############################################
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/packagemanager-19- saveddir=`pwd`
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/packagemanager:20: BEAST0=`dirname "$PRG"`/..
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/packagemanager:21: BEAST=`cd "$BEAST0" && pwd`
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/packagemanager-22- cd "$saveddir"
##############################################
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/treeannotator-8- while [ -h "$PRG" ] ; do
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/treeannotator:9: ls=`ls -ld "$PRG"`
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/treeannotator:10: link=`expr "$ls" : '.*-> \(.*\)$'`
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/treeannotator-11- if expr "$link" : '/.*' > /dev/null; then
##############################################
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/treeannotator-13- else
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/treeannotator:14: PRG="`dirname "$PRG"`/$link"
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/treeannotator-15- fi
##############################################
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/treeannotator-19- saveddir=`pwd`
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/treeannotator:20: BEAST0=`dirname "$PRG"`/..
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/treeannotator:21: BEAST=`cd "$BEAST0" && pwd`
beast2-mcmc-2.6.3+dfsg/release/Linux/bin/treeannotator-22- cd "$saveddir"
##############################################
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/applauncher-9- while [ -h "$PRG" ] ; do
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/applauncher:10: ls=`ls -ld "$PRG"`
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/applauncher:11: link=`expr "$ls" : '.*-> \(.*\)$'`
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/applauncher-12- if expr "$link" : '/.*' > /dev/null; then
##############################################
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/applauncher-14- else
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/applauncher:15: PRG="`dirname "$PRG"`/$link"
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/applauncher-16- fi
##############################################
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/applauncher-20- saveddir=`pwd`
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/applauncher:21: BEAST0=`dirname "$PRG"`/..
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/applauncher:22: BEAST=`cd "$BEAST0" && pwd`
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/applauncher-23- cd "$saveddir"
##############################################
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/beast-9- while [ -h "$PRG" ] ; do
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/beast:10: ls=`ls -ld "$PRG"`
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/beast:11: link=`expr "$ls" : '.*-> \(.*\)$'`
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/beast-12- if expr "$link" : '/.*' > /dev/null; then
##############################################
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/beast-14- else
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/beast:15: PRG="`dirname "$PRG"`/$link"
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/beast-16- fi
##############################################
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/beast-20- saveddir=`pwd`
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/beast:21: BEAST0=`dirname "$PRG"`/..
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/beast:22: BEAST=`cd "$BEAST0" && pwd`
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/beast-23- cd "$saveddir"
##############################################
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/beauti-9- while [ -h "$PRG" ] ; do
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/beauti:10: ls=`ls -ld "$PRG"`
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/beauti:11: link=`expr "$ls" : '.*-> \(.*\)$'`
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/beauti-12- if expr "$link" : '/.*' > /dev/null; then
##############################################
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/beauti-14- else
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/beauti:15: PRG="`dirname "$PRG"`/$link"
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/beauti-16- fi
##############################################
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/beauti-20- saveddir=`pwd`
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/beauti:21: BEAST0=`dirname "$PRG"`/..
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/beauti:22: BEAST=`cd "$BEAST0" && pwd`
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/beauti-23- cd "$saveddir"
##############################################
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/densitree-9- while [ -h "$PRG" ] ; do
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/densitree:10: ls=`ls -ld "$PRG"`
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/densitree:11: link=`expr "$ls" : '.*-> \(.*\)$'`
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/densitree-12- if expr "$link" : '/.*' > /dev/null; then
##############################################
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/densitree-14- else
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/densitree:15: PRG="`dirname "$PRG"`/$link"
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/densitree-16- fi
##############################################
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/densitree-20- saveddir=`pwd`
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/densitree:21: BEAST0=`dirname "$PRG"`/..
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/densitree:22: BEAST=`cd "$BEAST0" && pwd`
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/densitree-23- cd "$saveddir"
##############################################
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/loganalyser-9- while [ -h "$PRG" ] ; do
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/loganalyser:10: ls=`ls -ld "$PRG"`
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/loganalyser:11: link=`expr "$ls" : '.*-> \(.*\)$'`
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/loganalyser-12- if expr "$link" : '/.*' > /dev/null; then
##############################################
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/loganalyser-14- else
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/loganalyser:15: PRG="`dirname "$PRG"`/$link"
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/loganalyser-16- fi
##############################################
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/loganalyser-20- saveddir=`pwd`
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/loganalyser:21: BEAST0=`dirname "$PRG"`/..
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/loganalyser:22: BEAST=`cd "$BEAST0" && pwd`
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/loganalyser-23- cd "$saveddir"
##############################################
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/logcombiner-9- while [ -h "$PRG" ] ; do
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/logcombiner:10: ls=`ls -ld "$PRG"`
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/logcombiner:11: link=`expr "$ls" : '.*-> \(.*\)$'`
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/logcombiner-12- if expr "$link" : '/.*' > /dev/null; then
##############################################
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/logcombiner-14- else
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/logcombiner:15: PRG="`dirname "$PRG"`/$link"
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/logcombiner-16- fi
##############################################
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/logcombiner-20- saveddir=`pwd`
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/logcombiner:21: BEAST0=`dirname "$PRG"`/..
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/logcombiner:22: BEAST=`cd "$BEAST0" && pwd`
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/logcombiner-23- cd "$saveddir"
##############################################
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/packagemanager-9- while [ -h "$PRG" ] ; do
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/packagemanager:10: ls=`ls -ld "$PRG"`
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/packagemanager:11: link=`expr "$ls" : '.*-> \(.*\)$'`
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/packagemanager-12- if expr "$link" : '/.*' > /dev/null; then
##############################################
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/packagemanager-14- else
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/packagemanager:15: PRG="`dirname "$PRG"`/$link"
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/packagemanager-16- fi
##############################################
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/packagemanager-20- saveddir=`pwd`
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/packagemanager:21: BEAST0=`dirname "$PRG"`/..
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/packagemanager:22: BEAST=`cd "$BEAST0" && pwd`
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/packagemanager-23- cd "$saveddir"
##############################################
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/treeannotator-9- while [ -h "$PRG" ] ; do
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/treeannotator:10: ls=`ls -ld "$PRG"`
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/treeannotator:11: link=`expr "$ls" : '.*-> \(.*\)$'`
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/treeannotator-12- if expr "$link" : '/.*' > /dev/null; then
##############################################
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/treeannotator-14- else
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/treeannotator:15: PRG="`dirname "$PRG"`/$link"
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/treeannotator-16- fi
##############################################
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/treeannotator-20- saveddir=`pwd`
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/treeannotator:21: BEAST0=`dirname "$PRG"`/..
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/treeannotator:22: BEAST=`cd "$BEAST0" && pwd`
beast2-mcmc-2.6.3+dfsg/release/Linux/jrebin/treeannotator-23- cd "$saveddir"
##############################################
beast2-mcmc-2.6.3+dfsg/release/Mac/createdmg.sh-5-export applicationName=BEAST
beast2-mcmc-2.6.3+dfsg/release/Mac/createdmg.sh:6:export version=`perl -e 'while($s=<>) {if ($s=~/"version"/) {$s =~ /value="([^"]*)"/; print $1;}}' < ../../build.xml`
beast2-mcmc-2.6.3+dfsg/release/Mac/createdmg.sh-7-export title="BEAST v${version}"
##############################################
beast2-mcmc-2.6.3+dfsg/scripts/doc.pl-62- $sDir =~ s/[^\/]*java$//;
beast2-mcmc-2.6.3+dfsg/scripts/doc.pl:63: `mkdir -p $sDir`;
beast2-mcmc-2.6.3+dfsg/scripts/doc.pl-64- open(FIN,$sFile) or die "Cannot open file $sFile for reading";
##############################################
beast2-mcmc-2.6.3+dfsg/debian/bin/beauti2-30-if [ "$https_proxy" != "" ] ; then
beast2-mcmc-2.6.3+dfsg/debian/bin/beauti2:31: HTTPSPROXYHOST=`echo $https_proxy | sed -e 's?^https*:/*??' -e 's/:[0-9]*//'`
beast2-mcmc-2.6.3+dfsg/debian/bin/beauti2:32: HTTPSPROXYPORT=`echo $https_proxy | sed -e 's/^.*:\([0-9]\+\)$/\1/'`
beast2-mcmc-2.6.3+dfsg/debian/bin/beauti2-33- SETHTTPS="-Dhttps.proxyHost=${HTTPSPROXYHOST} -Dhttps.proxyPort=${HTTPSPROXYPORT}"
##############################################
beast2-mcmc-2.6.3+dfsg/debian/bin/beauti2-36-if [ "$http_proxy" != "" ] ; then
beast2-mcmc-2.6.3+dfsg/debian/bin/beauti2:37: HTTPPROXYHOST=`echo $http_proxy | sed -e 's?^http:/*??' -e 's/:[0-9]*//'`
beast2-mcmc-2.6.3+dfsg/debian/bin/beauti2:38: HTTPPROXYPORT=`echo $http_proxy | sed -e 's/^.*:\([0-9]\+\)$/\1/'`
beast2-mcmc-2.6.3+dfsg/debian/bin/beauti2-39- SETHTTP="-Dhttp.proxyHost=${HTTPPROXYHOST} -Dhttp.proxyPort=${HTTPPROXYPORT}"
##############################################
beast2-mcmc-2.6.3+dfsg/debian/tests/run-unit-test-3-if [ "$AUTOPKGTEST_TMP" = "" ] ; then
beast2-mcmc-2.6.3+dfsg/debian/tests/run-unit-test:4: AUTOPKGTEST_TMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
beast2-mcmc-2.6.3+dfsg/debian/tests/run-unit-test-5-fi