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         / ___\_` __ \__  \ |  |  \/ __ | | \\_  __\
        / /_/  >  | \// __ \|  |  / /_/ | |  ||  |  
        \___  /|__|  (____  /____/\____ | |__||__|  
       /_____/            \/           \/           
              grep rough audit - static analysis tool
                  v2.8 written by @Wireghoul
=================================[justanotherhacker.com]===
bio-rainbow-2.0.4+dfsg/main.c-48-	"Input File Format: <seqid:int>\\t<cluster_id:int>\\t<read1:string>\\t<read2:string>[\\t<pre_cluster_id:int>]\n"
bio-rainbow-2.0.4+dfsg/main.c:49:	"  -i <string> Input rbasm output file [stdin]\n"
bio-rainbow-2.0.4+dfsg/main.c-50-	"  -a          output assembly\n"
##############################################
bio-rainbow-2.0.4+dfsg/main.c-194-	uint32_t max_cluster = 300;
bio-rainbow-2.0.4+dfsg/main.c:195:	uint32_t need_asm = 0;
bio-rainbow-2.0.4+dfsg/main.c-196-	float min_sm = 0.90;
##############################################
bio-rainbow-2.0.4+dfsg/main.c-211-			case 'N': max_cluster = atoi(optarg); break;
bio-rainbow-2.0.4+dfsg/main.c:212:			case 'a': need_asm = 1; break;
bio-rainbow-2.0.4+dfsg/main.c-213-			case 'r': min_read = atoi(optarg); break;
##############################################
bio-rainbow-2.0.4+dfsg/mergectg.c-473-	merger->max_read = max_read;
bio-rainbow-2.0.4+dfsg/mergectg.c:474:	merger->need_asm = need_asm;
bio-rainbow-2.0.4+dfsg/mergectg.c-475-	merger->max_cluster = max_cluster;
##############################################
bio-rainbow-2.0.4+dfsg/tags-186-begin_iter_bitvec	bitvec.h	/^static inline void begin_iter_bitvec(BitVec *bitv){ bitv->iter_idx = 0; }$/;"	f
bio-rainbow-2.0.4+dfsg/tags:187:begin_iter_simpasm	simp_asm.h	/^static inline void begin_iter_simpasm(SimpAssembler *sa){ sa->iter_idx = 0; }$/;"	f
bio-rainbow-2.0.4+dfsg/tags-188-bit2bits	dna.h	144;"	d
##############################################
bio-rainbow-2.0.4+dfsg/tags-373-free_sequence	file_reader.h	59;"	d
bio-rainbow-2.0.4+dfsg/tags:374:free_simpasm	simp_asm.h	/^static inline void free_simpasm(SimpAssembler *sa){$/;"	f
bio-rainbow-2.0.4+dfsg/tags-375-free_string	string.h	/^static inline void free_string(String *str){ free(str->string); free(str); }$/;"	f
##############################################
bio-rainbow-2.0.4+dfsg/tags-454-init_merger	mergectg.c	/^merge_t* init_merger(uint32_t min_kmer, uint32_t min_overlap, float het, uint32_t kmersize, uint32_t max_cluster, uint32_t need_asm) {$/;"	f
bio-rainbow-2.0.4+dfsg/tags:455:init_simpasm	simp_asm.h	/^static inline SimpAssembler* init_simpasm(uint32_t n_cpu, uint32_t kmer_size, uint32_t rd_len, uint32_t strand, uint32_t min_ol, float min_sm, uint32_t max_mm, int allow_gap){$/;"	f
bio-rainbow-2.0.4+dfsg/tags-456-init_string	string.h	/^static inline String* init_string(int cap){$/;"	f
##############################################
bio-rainbow-2.0.4+dfsg/tags-465-iter_idx	simp_asm.h	/^	uint32_t iter_idx;$/;"	m	struct:__anon51
bio-rainbow-2.0.4+dfsg/tags:466:iter_simpasm	simp_asm.h	/^static inline SimpContigInfo* iter_simpasm(SimpAssembler *sa){$/;"	f
bio-rainbow-2.0.4+dfsg/tags-467-j	stdaln.h	/^	int i, j;$/;"	m	struct:__anon15
##############################################
bio-rainbow-2.0.4+dfsg/tags-569-native_number_cmp	list.h	216;"	d
bio-rainbow-2.0.4+dfsg/tags:570:need_asm	mergectg.h	/^	uint32_t need_asm; \/\/ parameter$/;"	m	struct:__anon8
bio-rainbow-2.0.4+dfsg/tags-571-nst_nt4_table	ezmsim.c	/^uint8_t nst_nt4_table[256] = {$/;"	v
##############################################
bio-rainbow-2.0.4+dfsg/tags-620-print_alignments	asm_R2.c	/^void print_alignments(EF *ef){$/;"	f
bio-rainbow-2.0.4+dfsg/tags:621:print_asm	mergectg.c	/^void print_asm(merge_t *merger, FILE *out) {$/;"	f
bio-rainbow-2.0.4+dfsg/tags-622-print_asm2	mergectg.c	/^void print_asm2(merge_t *merger, FILE *out) {$/;"	f
##############################################
bio-rainbow-2.0.4+dfsg/tags-630-push_heap	heap.h	/^static inline void push_heap(Heap *heap, void *p){$/;"	f
bio-rainbow-2.0.4+dfsg/tags:631:push_simpasm	simp_asm.h	/^static inline void push_simpasm(SimpAssembler *sa, uint32_t seqid, char *seq, uint32_t seqlen, uint8_t rank){$/;"	f
bio-rainbow-2.0.4+dfsg/tags-632-push_vec	vector.h	/^static inline void push_vec(Vector *vec, void *e){$/;"	f
##############################################
bio-rainbow-2.0.4+dfsg/tags-677-reset_merger	mergectg.c	/^void reset_merger(merge_t *merger) {$/;"	f
bio-rainbow-2.0.4+dfsg/tags:678:reset_simpasm	simp_asm.h	/^static inline void reset_simpasm(SimpAssembler *sa){$/;"	f
bio-rainbow-2.0.4+dfsg/tags-679-reset_vec	vector.h	/^static inline void reset_vec(Vector *vec){$/;"	f
##############################################
bio-rainbow-2.0.4+dfsg/debian/bio-rainbow.install-1-select* usr/bin/
bio-rainbow-2.0.4+dfsg/debian/bio-rainbow.install:2:rbasm usr/bin/
bio-rainbow-2.0.4+dfsg/debian/bio-rainbow.install-3-bio-rainbow usr/bin/
##############################################
bio-rainbow-2.0.4+dfsg/debian/createmanpages-4-
bio-rainbow-2.0.4+dfsg/debian/createmanpages:5:VERSION=`dpkg-parsechangelog | awk '/^Version:/ {print $2}' | sed -e 's/^[0-9]*://' -e 's/-.*//' -e 's/[+~]dfsg$//'`
bio-rainbow-2.0.4+dfsg/debian/createmanpages-6-NAME=`grep "^Description:" debian/control | sed 's/^Description: *//'`
##############################################
bio-rainbow-2.0.4+dfsg/debian/mans/bio-rainbow.1-53-.HP
bio-rainbow-2.0.4+dfsg/debian/mans/bio-rainbow.1:54:\fB\-i\fR <string> Input rbasm output file [stdin]
bio-rainbow-2.0.4+dfsg/debian/mans/bio-rainbow.1-55-.TP
##############################################
bio-rainbow-2.0.4+dfsg/debian/mans/rbasm.1-1-.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.6.
bio-rainbow-2.0.4+dfsg/debian/mans/rbasm.1:2:.TH RBASM "1" "July 2018" "rbasm 2.0.4" "User Commands"
bio-rainbow-2.0.4+dfsg/debian/mans/rbasm.1-3-.SH NAME
bio-rainbow-2.0.4+dfsg/debian/mans/rbasm.1:4:rbasm \- local assemble fragments around restriction sites
bio-rainbow-2.0.4+dfsg/debian/mans/rbasm.1-5-.SH SYNOPSIS
##############################################
bio-rainbow-2.0.4+dfsg/debian/patches/rename_binary.patch-9- 
bio-rainbow-2.0.4+dfsg/debian/patches/rename_binary.patch:10: #all: rainbow rbasm rbmergetag ezmsim 
bio-rainbow-2.0.4+dfsg/debian/patches/rename_binary.patch-11--all: rainbow ezmsim rbasm
##############################################
bio-rainbow-2.0.4+dfsg/debian/patches/rename_binary.patch-22- clean:
bio-rainbow-2.0.4+dfsg/debian/patches/rename_binary.patch:23:-	rm -f *.o *.gcda *.gcno *.gcov gmon.out rainbow rbasm ezmsim rbmergetag *.exe
bio-rainbow-2.0.4+dfsg/debian/patches/rename_binary.patch:24:+	rm -f *.o *.gcda *.gcno *.gcov gmon.out bio-rainbow rbasm ezmsim rbmergetag *.exe
bio-rainbow-2.0.4+dfsg/debian/patches/rename_binary.patch-25- 
##############################################
bio-rainbow-2.0.4+dfsg/debian/patches/spelling.patch-7-@@ -93,10 +93,10 @@ NOTE: the input file format should be: <
bio-rainbow-2.0.4+dfsg/debian/patches/spelling.patch:8: Usage: rbasm [options]
bio-rainbow-2.0.4+dfsg/debian/patches/spelling.patch-9-  -i <string> Input file [STDIN] 
##############################################
bio-rainbow-2.0.4+dfsg/.pc/add_hardening.patch/Makefile-11-
bio-rainbow-2.0.4+dfsg/.pc/add_hardening.patch/Makefile:12:#all: rainbow rbasm rbmergetag ezmsim 
bio-rainbow-2.0.4+dfsg/.pc/add_hardening.patch/Makefile-13-all: rainbow ezmsim rbasm
##############################################
bio-rainbow-2.0.4+dfsg/.pc/add_hardening.patch/Makefile-44-clean:
bio-rainbow-2.0.4+dfsg/.pc/add_hardening.patch/Makefile:45:	rm -f *.o *.gcda *.gcno *.gcov gmon.out rainbow rbasm ezmsim rbmergetag *.exe
bio-rainbow-2.0.4+dfsg/.pc/add_hardening.patch/Makefile-46-
##############################################
bio-rainbow-2.0.4+dfsg/.pc/rename_binary.patch/Makefile-17-
bio-rainbow-2.0.4+dfsg/.pc/rename_binary.patch/Makefile:18:#all: rainbow rbasm rbmergetag ezmsim 
bio-rainbow-2.0.4+dfsg/.pc/rename_binary.patch/Makefile-19-all: rainbow ezmsim rbasm
##############################################
bio-rainbow-2.0.4+dfsg/.pc/rename_binary.patch/Makefile-50-clean:
bio-rainbow-2.0.4+dfsg/.pc/rename_binary.patch/Makefile:51:	rm -f *.o *.gcda *.gcno *.gcov gmon.out rainbow rbasm ezmsim rbmergetag *.exe
bio-rainbow-2.0.4+dfsg/.pc/rename_binary.patch/Makefile-52-
##############################################
bio-rainbow-2.0.4+dfsg/.pc/rename_binary.patch/README.txt-92-NOTE: the input file format should be: <seqid:int>\t<cluster_id:int>\t<read1:string>\t<read2:string>[\t<pre_cluster_id:int>]
bio-rainbow-2.0.4+dfsg/.pc/rename_binary.patch/README.txt:93:Usage: rbasm [options]
bio-rainbow-2.0.4+dfsg/.pc/rename_binary.patch/README.txt-94- -i <string> Input file [STDIN] 
##############################################
bio-rainbow-2.0.4+dfsg/.pc/rename_binary.patch/README.txt-116-v2.0.1: README and usage infomation updated
bio-rainbow-2.0.4+dfsg/.pc/rename_binary.patch/README.txt:117:v2.0.2: 'merge' options are riched. The 'merge' assembly work can be customized like rbasm now. Thanks Ross Whetten in NCSU for advicing this.
bio-rainbow-2.0.4+dfsg/.pc/rename_binary.patch/README.txt-118-v2.0.3: changed the name of script 'select_best_rbcontig2.pl' to 'select_best_rbcontig_plus_read1.pl', and documented it. 
##############################################
bio-rainbow-2.0.4+dfsg/.pc/spelling.patch/README.txt-92-NOTE: the input file format should be: <seqid:int>\t<cluster_id:int>\t<read1:string>\t<read2:string>[\t<pre_cluster_id:int>]
bio-rainbow-2.0.4+dfsg/.pc/spelling.patch/README.txt:93:Usage: rbasm [options]
bio-rainbow-2.0.4+dfsg/.pc/spelling.patch/README.txt-94- -i <string> Input file [STDIN] 
##############################################
bio-rainbow-2.0.4+dfsg/.pc/spelling.patch/README.txt-116-v2.0.1: README and usage infomation updated
bio-rainbow-2.0.4+dfsg/.pc/spelling.patch/README.txt:117:v2.0.2: 'merge' options are riched. The 'merge' assembly work can be customized like rbasm now. Thanks Ross Whetten in NCSU for advicing this.
bio-rainbow-2.0.4+dfsg/.pc/spelling.patch/README.txt-118-v2.0.3: changed the name of script 'select_best_rbcontig2.pl' to 'select_best_rbcontig_plus_read1.pl', and documented it. 
##############################################
bio-rainbow-2.0.4+dfsg/Makefile-17-
bio-rainbow-2.0.4+dfsg/Makefile:18:#all: rainbow rbasm rbmergetag ezmsim 
bio-rainbow-2.0.4+dfsg/Makefile-19-all: bio-rainbow ezmsim rbasm
##############################################
bio-rainbow-2.0.4+dfsg/Makefile-50-clean:
bio-rainbow-2.0.4+dfsg/Makefile:51:	rm -f *.o *.gcda *.gcno *.gcov gmon.out bio-rainbow rbasm ezmsim rbmergetag *.exe
bio-rainbow-2.0.4+dfsg/Makefile-52-
##############################################
bio-rainbow-2.0.4+dfsg/README.txt-92-NOTE: the input file format should be: <seqid:int>\t<cluster_id:int>\t<read1:string>\t<read2:string>[\t<pre_cluster_id:int>]
bio-rainbow-2.0.4+dfsg/README.txt:93:Usage: rbasm [options]
bio-rainbow-2.0.4+dfsg/README.txt-94- -i <string> Input file [STDIN] 
##############################################
bio-rainbow-2.0.4+dfsg/README.txt-116-v2.0.1: README and usage infomation updated
bio-rainbow-2.0.4+dfsg/README.txt:117:v2.0.2: 'merge' options are riched. The 'merge' assembly work can be customized like rbasm now. Thanks Ross Whetten in NCSU for advicing this.
bio-rainbow-2.0.4+dfsg/README.txt-118-v2.0.3: changed the name of script 'select_best_rbcontig2.pl' to 'select_best_rbcontig_plus_read1.pl', and documented it.