===========================================================
                                      .___ __  __   
          _________________  __ __  __| _/|__|/  |_ 
         / ___\_` __ \__  \ |  |  \/ __ | | \\_  __\
        / /_/  >  | \// __ \|  |  / /_/ | |  ||  |  
        \___  /|__|  (____  /____/\____ | |__||__|  
       /_____/            \/           \/           
              grep rough audit - static analysis tool
                  v2.8 written by @Wireghoul
=================================[justanotherhacker.com]===
biosquid-1.9g+cvs20050121/Formats/formattest.pl-35-    if ($autodetect[$i]) {
biosquid-1.9g+cvs20050121/Formats/formattest.pl:36:	$output = `$binpath/seqstat $filename[$i]`;
biosquid-1.9g+cvs20050121/Formats/formattest.pl-37-	if ($? != 0) { die "seqstat failed, autodetecting, on $filename[$i]"; }
##############################################
biosquid-1.9g+cvs20050121/Formats/formattest.pl-44-    }
biosquid-1.9g+cvs20050121/Formats/formattest.pl:45:    $output = `$binpath/seqstat --informat $format[$i] $filename[$i]`;
biosquid-1.9g+cvs20050121/Formats/formattest.pl-46-	if ($? != 0) { die "seqstat failed, using --informat, on $filename[$i]"; }
##############################################
biosquid-1.9g+cvs20050121/Formats/formattest.pl-62-
biosquid-1.9g+cvs20050121/Formats/formattest.pl:63:	`$binpath/sreformat --informat $format[$i] $format[$j] $filename[$i] > formattest.tmp`;
biosquid-1.9g+cvs20050121/Formats/formattest.pl-64-	if ($? != 0) { die "sreformat failed ($format[$i] to $format[$j]) on $filename[$i]"; }
biosquid-1.9g+cvs20050121/Formats/formattest.pl:65:	$output = `$binpath/seqstat --informat $format[$j] formattest.tmp`;
biosquid-1.9g+cvs20050121/Formats/formattest.pl-66-	if ($? != 0) { die "seqstat failed after sreformat ($format[$i] to $format[$j]) on $filename[$i]"; }
##############################################
biosquid-1.9g+cvs20050121/Testsuite/testsuite.pm-16-    my $output;
biosquid-1.9g+cvs20050121/Testsuite/testsuite.pm:17:    $output = `./$cfgprog`;
biosquid-1.9g+cvs20050121/Testsuite/testsuite.pm-18-    if    ($output =~ /$flag\s+false/) { return 0; }
##############################################
biosquid-1.9g+cvs20050121/Testsuite/testsuite.pm-39-    my ($cmd) = @_;
biosquid-1.9g+cvs20050121/Testsuite/testsuite.pm:40:    system("$cmd 2>/dev/null");	            # stderr directed away
biosquid-1.9g+cvs20050121/Testsuite/testsuite.pm-41-    if ($? != 0) { $status = 1; &done(); }
##############################################
biosquid-1.9g+cvs20050121/Testsuite/translate-test.pl-17-
biosquid-1.9g+cvs20050121/Testsuite/translate-test.pl:18:system("$shuffle -i -n 5 -t 200 --dna -o $tmp");
biosquid-1.9g+cvs20050121/Testsuite/translate-test.pl-19-if ($? != 0) { print("FAILED (shuffle)\n"); exit(1); }
biosquid-1.9g+cvs20050121/Testsuite/translate-test.pl-20-
biosquid-1.9g+cvs20050121/Testsuite/translate-test.pl:21:system("$sindex $tmp");
biosquid-1.9g+cvs20050121/Testsuite/translate-test.pl-22-if ($? != 0) { print("FAILED (sindex)\n"); exit(1); }
##############################################
biosquid-1.9g+cvs20050121/Testsuite/translate-test.pl-24-
biosquid-1.9g+cvs20050121/Testsuite/translate-test.pl:25:system("$translate -o $tmp.pep -l 10 $tmp");
biosquid-1.9g+cvs20050121/Testsuite/translate-test.pl-26-if ($? != 0) { print("FAILED (translate)\n"); exit(1); }
##############################################
biosquid-1.9g+cvs20050121/Testsuite/translate-test.pl-39-	print("$start..$end\n");
biosquid-1.9g+cvs20050121/Testsuite/translate-test.pl:40:	system("$sfetch -d $tmp -f $start -t $end -o $tmp.orf $source");
biosquid-1.9g+cvs20050121/Testsuite/translate-test.pl-41-	if ($? != 0) { print("FAILED (sfetch)\n"); exit(1); }
biosquid-1.9g+cvs20050121/Testsuite/translate-test.pl-42-	
biosquid-1.9g+cvs20050121/Testsuite/translate-test.pl:43:	$line = `$translate -l10 $tmp.orf | head -2 | tail -1`;
biosquid-1.9g+cvs20050121/Testsuite/translate-test.pl-44-	if ($? != 0) { print("FAILED (2nd translate)\n"); exit(1); }
##############################################
biosquid-1.9g+cvs20050121/Testsuite/bug-1-sfetch-paths-28-
biosquid-1.9g+cvs20050121/Testsuite/bug-1-sfetch-paths:29:system("rm -rf $tmpdir");
biosquid-1.9g+cvs20050121/Testsuite/bug-1-sfetch-paths-30-testsuite::done();
##############################################
biosquid-1.9g+cvs20050121/config.sub-53-
biosquid-1.9g+cvs20050121/config.sub:54:me=`echo "$0" | sed -e 's,.*/,,'`
biosquid-1.9g+cvs20050121/config.sub-55-
##############################################
biosquid-1.9g+cvs20050121/config.sub-117-# Here we must recognize all the valid KERNEL-OS combinations.
biosquid-1.9g+cvs20050121/config.sub:118:maybe_os=`echo $1 | sed 's/^\(.*\)-\([^-]*-[^-]*\)$/\2/'`
biosquid-1.9g+cvs20050121/config.sub-119-case $maybe_os in
##############################################
biosquid-1.9g+cvs20050121/config.sub-121-    os=-$maybe_os
biosquid-1.9g+cvs20050121/config.sub:122:    basic_machine=`echo $1 | sed 's/^\(.*\)-\([^-]*-[^-]*\)$/\1/'`
biosquid-1.9g+cvs20050121/config.sub-123-    ;;
biosquid-1.9g+cvs20050121/config.sub-124-  *)
biosquid-1.9g+cvs20050121/config.sub:125:    basic_machine=`echo $1 | sed 's/-[^-]*$//'`
biosquid-1.9g+cvs20050121/config.sub-126-    if [ $basic_machine != $1 ]
biosquid-1.9g+cvs20050121/config.sub:127:    then os=`echo $1 | sed 's/.*-/-/'`
biosquid-1.9g+cvs20050121/config.sub-128-    else os=; fi
##############################################
biosquid-1.9g+cvs20050121/config.sub-172-		os=-sco3.2v5
biosquid-1.9g+cvs20050121/config.sub:173:		basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
biosquid-1.9g+cvs20050121/config.sub-174-		;;
##############################################
biosquid-1.9g+cvs20050121/config.sub-176-		os=-sco3.2v4
biosquid-1.9g+cvs20050121/config.sub:177:		basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
biosquid-1.9g+cvs20050121/config.sub-178-		;;
biosquid-1.9g+cvs20050121/config.sub-179-	-sco3.2.[4-9]*)
biosquid-1.9g+cvs20050121/config.sub:180:		os=`echo $os | sed -e 's/sco3.2./sco3.2v/'`
biosquid-1.9g+cvs20050121/config.sub:181:		basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
biosquid-1.9g+cvs20050121/config.sub-182-		;;
##############################################
biosquid-1.9g+cvs20050121/config.sub-184-		# Don't forget version if it is 3.2v4 or newer.
biosquid-1.9g+cvs20050121/config.sub:185:		basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
biosquid-1.9g+cvs20050121/config.sub-186-		;;
##############################################
biosquid-1.9g+cvs20050121/config.sub-188-		os=-sco3.2v2
biosquid-1.9g+cvs20050121/config.sub:189:		basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
biosquid-1.9g+cvs20050121/config.sub-190-		;;
biosquid-1.9g+cvs20050121/config.sub-191-	-udk*)
biosquid-1.9g+cvs20050121/config.sub:192:		basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
biosquid-1.9g+cvs20050121/config.sub-193-		;;
##############################################
biosquid-1.9g+cvs20050121/config.sub-195-		os=-isc2.2
biosquid-1.9g+cvs20050121/config.sub:196:		basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
biosquid-1.9g+cvs20050121/config.sub-197-		;;
##############################################
biosquid-1.9g+cvs20050121/config.sub-201-	-isc*)
biosquid-1.9g+cvs20050121/config.sub:202:		basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
biosquid-1.9g+cvs20050121/config.sub-203-		;;
##############################################
biosquid-1.9g+cvs20050121/config.sub-207-	-ptx*)
biosquid-1.9g+cvs20050121/config.sub:208:		basic_machine=`echo $1 | sed -e 's/86-.*/86-sequent/'`
biosquid-1.9g+cvs20050121/config.sub-209-		;;
biosquid-1.9g+cvs20050121/config.sub-210-	-windowsnt*)
biosquid-1.9g+cvs20050121/config.sub:211:		os=`echo $os | sed -e 's/windowsnt/winnt/'`
biosquid-1.9g+cvs20050121/config.sub-212-		;;
##############################################
biosquid-1.9g+cvs20050121/config.sub-263-	*-*-*)
biosquid-1.9g+cvs20050121/config.sub:264:		echo Invalid configuration \`$1\': machine \`$basic_machine\' not recognized 1>&2
biosquid-1.9g+cvs20050121/config.sub-265-		exit 1
##############################################
biosquid-1.9g+cvs20050121/config.sub-519-	i*86v32)
biosquid-1.9g+cvs20050121/config.sub:520:		basic_machine=`echo $1 | sed -e 's/86.*/86-pc/'`
biosquid-1.9g+cvs20050121/config.sub-521-		os=-sysv32
##############################################
biosquid-1.9g+cvs20050121/config.sub-523-	i*86v4*)
biosquid-1.9g+cvs20050121/config.sub:524:		basic_machine=`echo $1 | sed -e 's/86.*/86-pc/'`
biosquid-1.9g+cvs20050121/config.sub-525-		os=-sysv4
##############################################
biosquid-1.9g+cvs20050121/config.sub-527-	i*86v)
biosquid-1.9g+cvs20050121/config.sub:528:		basic_machine=`echo $1 | sed -e 's/86.*/86-pc/'`
biosquid-1.9g+cvs20050121/config.sub-529-		os=-sysv
##############################################
biosquid-1.9g+cvs20050121/config.sub-531-	i*86sol2)
biosquid-1.9g+cvs20050121/config.sub:532:		basic_machine=`echo $1 | sed -e 's/86.*/86-pc/'`
biosquid-1.9g+cvs20050121/config.sub-533-		os=-solaris2
##############################################
biosquid-1.9g+cvs20050121/config.sub-587-	mips3*-*)
biosquid-1.9g+cvs20050121/config.sub:588:		basic_machine=`echo $basic_machine | sed -e 's/mips3/mips64/'`
biosquid-1.9g+cvs20050121/config.sub-589-		;;
biosquid-1.9g+cvs20050121/config.sub-590-	mips3*)
biosquid-1.9g+cvs20050121/config.sub:591:		basic_machine=`echo $basic_machine | sed -e 's/mips3/mips64/'`-unknown
biosquid-1.9g+cvs20050121/config.sub-592-		;;
##############################################
biosquid-1.9g+cvs20050121/config.sub-714-	pentium-* | p5-* | k5-* | k6-* | nexgen-*)
biosquid-1.9g+cvs20050121/config.sub:715:		basic_machine=i586-`echo $basic_machine | sed 's/^[^-]*-//'`
biosquid-1.9g+cvs20050121/config.sub-716-		;;
biosquid-1.9g+cvs20050121/config.sub-717-	pentiumpro-* | p6-* | 6x86-* | athlon-*)
biosquid-1.9g+cvs20050121/config.sub:718:		basic_machine=i686-`echo $basic_machine | sed 's/^[^-]*-//'`
biosquid-1.9g+cvs20050121/config.sub-719-		;;
biosquid-1.9g+cvs20050121/config.sub-720-	pentiumii-* | pentium2-*)
biosquid-1.9g+cvs20050121/config.sub:721:		basic_machine=i686-`echo $basic_machine | sed 's/^[^-]*-//'`
biosquid-1.9g+cvs20050121/config.sub-722-		;;
##############################################
biosquid-1.9g+cvs20050121/config.sub-729-	        ;;
biosquid-1.9g+cvs20050121/config.sub:730:	ppc-*)	basic_machine=powerpc-`echo $basic_machine | sed 's/^[^-]*-//'`
biosquid-1.9g+cvs20050121/config.sub-731-		;;
##############################################
biosquid-1.9g+cvs20050121/config.sub-735-	ppcle-* | powerpclittle-*)
biosquid-1.9g+cvs20050121/config.sub:736:		basic_machine=powerpcle-`echo $basic_machine | sed 's/^[^-]*-//'`
biosquid-1.9g+cvs20050121/config.sub-737-		;;
##############################################
biosquid-1.9g+cvs20050121/config.sub-977-	*)
biosquid-1.9g+cvs20050121/config.sub:978:		echo Invalid configuration \`$1\': machine \`$basic_machine\' not recognized 1>&2
biosquid-1.9g+cvs20050121/config.sub-979-		exit 1
##############################################
biosquid-1.9g+cvs20050121/config.sub-985-	*-digital*)
biosquid-1.9g+cvs20050121/config.sub:986:		basic_machine=`echo $basic_machine | sed 's/digital.*/dec/'`
biosquid-1.9g+cvs20050121/config.sub-987-		;;
biosquid-1.9g+cvs20050121/config.sub-988-	*-commodore*)
biosquid-1.9g+cvs20050121/config.sub:989:		basic_machine=`echo $basic_machine | sed 's/commodore.*/cbm/'`
biosquid-1.9g+cvs20050121/config.sub-990-		;;
##############################################
biosquid-1.9g+cvs20050121/config.sub-1003-	-solaris1 | -solaris1.*)
biosquid-1.9g+cvs20050121/config.sub:1004:		os=`echo $os | sed -e 's|solaris1|sunos4|'`
biosquid-1.9g+cvs20050121/config.sub-1005-		;;
##############################################
biosquid-1.9g+cvs20050121/config.sub-1015-	-gnu/linux*)
biosquid-1.9g+cvs20050121/config.sub:1016:		os=`echo $os | sed -e 's|gnu/linux|linux-gnu|'`
biosquid-1.9g+cvs20050121/config.sub-1017-		;;
##############################################
biosquid-1.9g+cvs20050121/config.sub-1057-	-mac*)
biosquid-1.9g+cvs20050121/config.sub:1058:		os=`echo $os | sed -e 's|mac|macos|'`
biosquid-1.9g+cvs20050121/config.sub-1059-		;;
biosquid-1.9g+cvs20050121/config.sub-1060-	-linux*)
biosquid-1.9g+cvs20050121/config.sub:1061:		os=`echo $os | sed -e 's|linux|linux-gnu|'`
biosquid-1.9g+cvs20050121/config.sub-1062-		;;
biosquid-1.9g+cvs20050121/config.sub-1063-	-sunos5*)
biosquid-1.9g+cvs20050121/config.sub:1064:		os=`echo $os | sed -e 's|sunos5|solaris2|'`
biosquid-1.9g+cvs20050121/config.sub-1065-		;;
biosquid-1.9g+cvs20050121/config.sub-1066-	-sunos6*)
biosquid-1.9g+cvs20050121/config.sub:1067:		os=`echo $os | sed -e 's|sunos6|solaris3|'`
biosquid-1.9g+cvs20050121/config.sub-1068-		;;
##############################################
biosquid-1.9g+cvs20050121/config.sub-1103-	-sinix5.*)
biosquid-1.9g+cvs20050121/config.sub:1104:		os=`echo $os | sed -e 's|sinix|sysv|'`
biosquid-1.9g+cvs20050121/config.sub-1105-		;;
##############################################
biosquid-1.9g+cvs20050121/config.sub-1142-		# Get rid of the `-' at the beginning of $os.
biosquid-1.9g+cvs20050121/config.sub:1143:		os=`echo $os | sed 's/[^-]*-//'`
biosquid-1.9g+cvs20050121/config.sub:1144:		echo Invalid configuration \`$1\': system \`$os\' not recognized 1>&2
biosquid-1.9g+cvs20050121/config.sub-1145-		exit 1
##############################################
biosquid-1.9g+cvs20050121/config.sub-1362-		esac
biosquid-1.9g+cvs20050121/config.sub:1363:		basic_machine=`echo $basic_machine | sed "s/unknown/$vendor/"`
biosquid-1.9g+cvs20050121/config.sub-1364-		;;
##############################################
biosquid-1.9g+cvs20050121/install-sh-85-
biosquid-1.9g+cvs20050121/install-sh:86:	-t=*) transformarg=`echo $1 | sed 's/-t=//'`
biosquid-1.9g+cvs20050121/install-sh-87-	    shift
##############################################
biosquid-1.9g+cvs20050121/install-sh-89-
biosquid-1.9g+cvs20050121/install-sh:90:	-b=*) transformbasename=`echo $1 | sed 's/-b=//'`
biosquid-1.9g+cvs20050121/install-sh-91-	    shift
##############################################
biosquid-1.9g+cvs20050121/install-sh-151-	then
biosquid-1.9g+cvs20050121/install-sh:152:		dst="$dst"/`basename $src`
biosquid-1.9g+cvs20050121/install-sh-153-	else
##############################################
biosquid-1.9g+cvs20050121/install-sh-158-## this sed command emulates the dirname command
biosquid-1.9g+cvs20050121/install-sh:159:dstdir=`echo $dst | sed -e 's,[^/]*$,,;s,/$,,;s,^$,.,'`
biosquid-1.9g+cvs20050121/install-sh-160-
##############################################
biosquid-1.9g+cvs20050121/install-sh-172-IFS='%'
biosquid-1.9g+cvs20050121/install-sh:173:set - `echo ${dstdir} | sed -e 's@/@%@g' -e 's@^%@/@'`
biosquid-1.9g+cvs20050121/install-sh-174-IFS="${oIFS}"
##############################################
biosquid-1.9g+cvs20050121/install-sh-206-	then
biosquid-1.9g+cvs20050121/install-sh:207:		dstfile=`basename $dst`
biosquid-1.9g+cvs20050121/install-sh-208-	else
##############################################
biosquid-1.9g+cvs20050121/install-sh-216-	then
biosquid-1.9g+cvs20050121/install-sh:217:		dstfile=`basename $dst`
biosquid-1.9g+cvs20050121/install-sh-218-	else
##############################################
biosquid-1.9g+cvs20050121/debian/rules-73-	for manpage in Man/*.man; do \
biosquid-1.9g+cvs20050121/debian/rules:74:	    cp -a $${manpage} $(CURDIR)/debian/biosquid/usr/share/man/man1/`basename $${manpage} .man`.1 ; \
biosquid-1.9g+cvs20050121/debian/rules-75-	done
##############################################
biosquid-1.9g+cvs20050121/debian/tests/run-unit-test-14-if [ "$AUTOPKGTEST_TMP" = "" ] ; then
biosquid-1.9g+cvs20050121/debian/tests/run-unit-test:15:  AUTOPKGTEST_TMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
biosquid-1.9g+cvs20050121/debian/tests/run-unit-test-16-  trap "rm -rf $AUTOPKGTEST_TMP" 0 INT QUIT ABRT PIPE TERM
##############################################
biosquid-1.9g+cvs20050121/.pc/perl-testsuite-inc.patch/Testsuite/bug-1-sfetch-paths-27-
biosquid-1.9g+cvs20050121/.pc/perl-testsuite-inc.patch/Testsuite/bug-1-sfetch-paths:28:system("rm -rf $tmpdir");
biosquid-1.9g+cvs20050121/.pc/perl-testsuite-inc.patch/Testsuite/bug-1-sfetch-paths-29-testsuite::done();