===========================================================
.___ __ __
_________________ __ __ __| _/|__|/ |_
/ ___\_` __ \__ \ | | \/ __ | | \\_ __\
/ /_/ > | \// __ \| | / /_/ | | || |
\___ /|__| (____ /____/\____ | |__||__|
/_____/ \/ \/
grep rough audit - static analysis tool
v2.8 written by @Wireghoul
=================================[justanotherhacker.com]===
cmtk-3.3.1p1+dfsg/testing/gui/testDriverFunctions.sh-69-{
cmtk-3.3.1p1+dfsg/testing/gui/testDriverFunctions.sh:70: local result=`get_unzipped $1`
cmtk-3.3.1p1+dfsg/testing/gui/testDriverFunctions.sh:71: local baseline=`get_unzipped $2`
cmtk-3.3.1p1+dfsg/testing/gui/testDriverFunctions.sh-72-
##############################################
cmtk-3.3.1p1+dfsg/testing/gui/triplanarTestDriver.sh.in-91-{
cmtk-3.3.1p1+dfsg/testing/gui/triplanarTestDriver.sh.in:92: baseline=`get_unzipped ${BASELINE}/$1`
cmtk-3.3.1p1+dfsg/testing/gui/triplanarTestDriver.sh.in:93: result=`get_unzipped ${tmpdir}/$1`
cmtk-3.3.1p1+dfsg/testing/gui/triplanarTestDriver.sh.in-94-
##############################################
cmtk-3.3.1p1+dfsg/testing/gui/triplanarTestDriver.sh-84-{
cmtk-3.3.1p1+dfsg/testing/gui/triplanarTestDriver.sh:85: baseline=`get_unzipped ${BASELINE}/$1`
cmtk-3.3.1p1+dfsg/testing/gui/triplanarTestDriver.sh:86: result=`get_unzipped ${tmpdir}/$1`
cmtk-3.3.1p1+dfsg/testing/gui/triplanarTestDriver.sh-87-
##############################################
cmtk-3.3.1p1+dfsg/testing/apps/appsTestDriver.sh.in-138- for f in $*; do
cmtk-3.3.1p1+dfsg/testing/apps/appsTestDriver.sh.in:139: local dir=`dirname $f`
cmtk-3.3.1p1+dfsg/testing/apps/appsTestDriver.sh.in-140- if [ "${dir}" == "/tmp" ]; then
##############################################
cmtk-3.3.1p1+dfsg/testing/apps/appsTestDriver.sh.in-147-{
cmtk-3.3.1p1+dfsg/testing/apps/appsTestDriver.sh.in:148: baseline=`get_unzipped ${BASELINE}/$1`
cmtk-3.3.1p1+dfsg/testing/apps/appsTestDriver.sh.in:149: result=`get_unzipped ${tmpdir}/$1`
cmtk-3.3.1p1+dfsg/testing/apps/appsTestDriver.sh.in-150-
##############################################
cmtk-3.3.1p1+dfsg/testing/apps/appsTestDriver.sh.in-194- # see if maximum relative difference between images exceeds 1e-6
cmtk-3.3.1p1+dfsg/testing/apps/appsTestDriver.sh.in:195: difference=`${BINDIR}/similarity $baseline $result | fgrep SIMval | cut -f3`
cmtk-3.3.1p1+dfsg/testing/apps/appsTestDriver.sh.in:196: compare=`echo "SCALE; $difference > $abs_threshold" | sed 's/e/*10^/g;s/SCALE/scale=10/' | bc`
cmtk-3.3.1p1+dfsg/testing/apps/appsTestDriver.sh.in-197-
##############################################
cmtk-3.3.1p1+dfsg/testing/apps/appsTestDriver.sh.in-207-
cmtk-3.3.1p1+dfsg/testing/apps/appsTestDriver.sh.in:208: difference=`${BINDIR}/similarity $baseline $result | fgrep SIMval | cut -f4`
cmtk-3.3.1p1+dfsg/testing/apps/appsTestDriver.sh.in:209: compare=`echo "SCALE; $difference > $rel_threshold" | sed 's/e/*10^/g;s/SCALE/scale=10/' | bc`
cmtk-3.3.1p1+dfsg/testing/apps/appsTestDriver.sh.in-210-
##############################################
cmtk-3.3.1p1+dfsg/Utilities/mxml/install-sh-85-
cmtk-3.3.1p1+dfsg/Utilities/mxml/install-sh:86: -t=*) transformarg=`echo $1 | sed 's/-t=//'`
cmtk-3.3.1p1+dfsg/Utilities/mxml/install-sh-87- shift
##############################################
cmtk-3.3.1p1+dfsg/Utilities/mxml/install-sh-89-
cmtk-3.3.1p1+dfsg/Utilities/mxml/install-sh:90: -b=*) transformbasename=`echo $1 | sed 's/-b=//'`
cmtk-3.3.1p1+dfsg/Utilities/mxml/install-sh-91- shift
##############################################
cmtk-3.3.1p1+dfsg/Utilities/mxml/install-sh-151- then
cmtk-3.3.1p1+dfsg/Utilities/mxml/install-sh:152: dst="$dst"/`basename $src`
cmtk-3.3.1p1+dfsg/Utilities/mxml/install-sh-153- else
##############################################
cmtk-3.3.1p1+dfsg/Utilities/mxml/install-sh-158-## this sed command emulates the dirname command
cmtk-3.3.1p1+dfsg/Utilities/mxml/install-sh:159:dstdir=`echo $dst | sed -e 's,[^/]*$,,;s,/$,,;s,^$,.,'`
cmtk-3.3.1p1+dfsg/Utilities/mxml/install-sh-160-
##############################################
cmtk-3.3.1p1+dfsg/Utilities/mxml/install-sh-172-IFS='%'
cmtk-3.3.1p1+dfsg/Utilities/mxml/install-sh:173:set - `echo ${dstdir} | sed -e 's@/@%@g' -e 's@^%@/@'`
cmtk-3.3.1p1+dfsg/Utilities/mxml/install-sh-174-IFS="${oIFS}"
##############################################
cmtk-3.3.1p1+dfsg/Utilities/mxml/install-sh-206- then
cmtk-3.3.1p1+dfsg/Utilities/mxml/install-sh:207: dstfile=`basename $dst`
cmtk-3.3.1p1+dfsg/Utilities/mxml/install-sh-208- else
##############################################
cmtk-3.3.1p1+dfsg/Utilities/mxml/install-sh-216- then
cmtk-3.3.1p1+dfsg/Utilities/mxml/install-sh:217: dstfile=`basename $dst`
cmtk-3.3.1p1+dfsg/Utilities/mxml/install-sh-218- else
##############################################
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure.in-62-uname=`uname`
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure.in:63:uversion=`uname -r | sed -e '1,$s/[[^0-9]]//g'`
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure.in-64-if test x$uname = xIRIX64; then
##############################################
cmtk-3.3.1p1+dfsg/Utilities/mxml/CMakeLists.txt-46-
cmtk-3.3.1p1+dfsg/Utilities/mxml/CMakeLists.txt:47:INCLUDE(${CMAKE_CURRENT_SOURCE_DIR}/CMake/CheckCInline.cmake)
cmtk-3.3.1p1+dfsg/Utilities/mxml/CMakeLists.txt-48-
##############################################
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-107-do
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure:108: if (set +x; test -z "`(eval $as_var=C; export $as_var) 2>&1`"); then
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-109- eval $as_var=C; export $as_var
##############################################
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-215- test \"x\$as_lineno_1\" != \"x\$as_lineno_2\" &&
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure:216: test \"x\`expr \$as_lineno_1 + 1\`\" = \"x\$as_lineno_2\") || { (exit 1); exit 1; }
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-217-") 2> /dev/null; then
##############################################
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-330- test "x$as_lineno_1" != "x$as_lineno_2" &&
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure:331: test "x`expr $as_lineno_1 + 1`" = "x$as_lineno_2") || { (exit 1); exit 1; }
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-332-
##############################################
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-425- test "x$as_lineno_1" != "x$as_lineno_2" &&
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure:426: test "x`expr $as_lineno_1 + 1`" = "x$as_lineno_2" || {
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-427-
##############################################
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-536- esac;
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure:537: case `ls -ld'$as_ls_L_option' "$1" 2>/dev/null` in
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-538- ???[sx]*):;;*)false;;esac;fi
##############################################
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-761- case $ac_option in
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure:762: *=*) ac_optarg=`expr "X$ac_option" : '[^=]*=\(.*\)'` ;;
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-763- *) ac_optarg=yes ;;
##############################################
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-804- -disable-* | --disable-*)
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure:805: ac_feature=`expr "x$ac_option" : 'x-*disable-\(.*\)'`
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-806- # Reject names that are not valid shell variable names.
##############################################
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-809- { (exit 1); exit 1; }; }
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure:810: ac_feature=`echo $ac_feature | sed 's/[-.]/_/g'`
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-811- eval enable_$ac_feature=no ;;
##############################################
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-823- -enable-* | --enable-*)
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure:824: ac_feature=`expr "x$ac_option" : 'x-*enable-\([^=]*\)'`
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-825- # Reject names that are not valid shell variable names.
##############################################
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-828- { (exit 1); exit 1; }; }
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure:829: ac_feature=`echo $ac_feature | sed 's/[-.]/_/g'`
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-830- eval enable_$ac_feature=\$ac_optarg ;;
##############################################
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-1020- -with-* | --with-*)
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure:1021: ac_package=`expr "x$ac_option" : 'x-*with-\([^=]*\)'`
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-1022- # Reject names that are not valid shell variable names.
##############################################
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-1025- { (exit 1); exit 1; }; }
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure:1026: ac_package=`echo $ac_package | sed 's/[-.]/_/g'`
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-1027- eval with_$ac_package=\$ac_optarg ;;
##############################################
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-1029- -without-* | --without-*)
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure:1030: ac_package=`expr "x$ac_option" : 'x-*without-\(.*\)'`
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-1031- # Reject names that are not valid shell variable names.
##############################################
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-1034- { (exit 1); exit 1; }; }
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure:1035: ac_package=`echo $ac_package | sed 's/[-.]/_/g'`
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-1036- eval with_$ac_package=no ;;
##############################################
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-1061- *=*)
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure:1062: ac_envvar=`expr "x$ac_option" : 'x\([^=]*\)='`
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-1063- # Reject names that are not valid shell variable names.
##############################################
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-1081-if test -n "$ac_prev"; then
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure:1082: ac_option=--`echo $ac_prev | sed 's/_/-/g'`
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-1083- { echo "$as_me: error: missing argument to $ac_option" >&2
##############################################
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-1127-ac_ls_di=`ls -di .` &&
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure:1128:ac_pwd_ls_di=`cd "$ac_pwd" && ls -di .` ||
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-1129- { echo "$as_me: error: Working directory cannot be determined" >&2
##############################################
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-1187-case $srcdir in
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure:1188:*/) srcdir=`expr "X$srcdir" : 'X\(.*[^/]\)' \| "X$srcdir" : 'X\(.*\)'`;;
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-1189-esac
##############################################
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-1230-By default, \`make install' will install all the files in
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure:1231:\`$ac_default_prefix/bin', \`$ac_default_prefix/lib' etc. You can specify
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure:1232:an installation prefix other than \`$ac_default_prefix' using \`--prefix',
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-1233-for instance \`--prefix=\$HOME'.
##############################################
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-1309-*)
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure:1310: ac_dir_suffix=/`echo "$ac_dir" | sed 's,^\.[\\/],,'`
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-1311- # A ".." for each directory in $ac_dir_suffix.
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure:1312: ac_top_builddir_sub=`echo "$ac_dir_suffix" | sed 's,/[^\\/]*,/..,g;s,/,,'`
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-1313- case $ac_top_builddir_sub in
##############################################
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-1442- *\'*)
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure:1443: ac_arg=`echo "$ac_arg" | sed "s/'/'\\\\\\\\''/g"` ;;
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-1444- esac
##############################################
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-1528- case $ac_val in
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure:1529: *\'\''*) ac_val=`echo "$ac_val" | sed "s/'\''/'\''\\\\\\\\'\'''\''/g"`;;
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-1530- esac
##############################################
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-1545- case $ac_val in
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure:1546: *\'\''*) ac_val=`echo "$ac_val" | sed "s/'\''/'\''\\\\\\\\'\'''\''/g"`;;
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-1547- esac
##############################################
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-1653- set,)
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure:1654: { echo "$as_me:$LINENO: error: \`$ac_var' was set to \`$ac_old_val' in the previous run" >&5
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure:1655:echo "$as_me: error: \`$ac_var' was set to \`$ac_old_val' in the previous run" >&2;}
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-1656- ac_cache_corrupted=: ;;
##############################################
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-1675- case $ac_new_val in
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure:1676: *\'*) ac_arg=$ac_var=`echo "$ac_new_val" | sed "s/'/'\\\\\\\\''/g"` ;;
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-1677- *) ac_arg=$ac_var=$ac_new_val ;;
##############################################
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-1781-uname=`uname`
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure:1782:uversion=`uname -r | sed -e '1,$s/[^0-9]//g'`
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-1783-if test x$uname = xIRIX64; then
##############################################
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-2100-echo "$as_me:$LINENO: checking for C compiler version" >&5
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure:2101:ac_compiler=`set X $ac_compile; echo $2`
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-2102-{ (ac_try="$ac_compiler --version >&5"
##############################################
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-2154-echo $ECHO_N "checking for C compiler default output file name... $ECHO_C" >&6; }
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure:2155:ac_link_default=`echo "$ac_link" | sed 's/ -o *conftest[^ ]*//'`
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-2156-#
##############################################
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-2202- then :; else
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure:2203: ac_cv_exeext=`expr "$ac_file" : '[^.]*\(\..*\)'`
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-2204- fi
##############################################
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-2299- *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.map | *.inf | *.o | *.obj ) ;;
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure:2300: *.* ) ac_cv_exeext=`expr "$ac_file" : '[^.]*\(\..*\)'`
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-2301- break;;
##############################################
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-2354- *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.map | *.inf ) ;;
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure:2355: *) ac_cv_objext=`expr "$ac_file" : '.*\.\(.*\)'`
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-2356- break;;
##############################################
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-2429-echo "${ECHO_T}$ac_cv_c_compiler_gnu" >&6; }
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure:2430:GCC=`test $ac_compiler_gnu = yes && echo yes`
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-2431-ac_test_CFLAGS=${CFLAGS+set}
##############################################
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-2822-echo "$as_me:$LINENO: checking for C++ compiler version" >&5
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure:2823:ac_compiler=`set X $ac_compile; echo $2`
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-2824-{ (ac_try="$ac_compiler --version >&5"
##############################################
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-2908-echo "${ECHO_T}$ac_cv_cxx_compiler_gnu" >&6; }
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure:2909:GXX=`test $ac_compiler_gnu = yes && echo yes`
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-2910-ac_test_CXXFLAGS=${CXXFLAGS+set}
##############################################
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-3567-do
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure:3568:as_ac_var=`echo "ac_cv_func_$ac_func" | $as_tr_sh`
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-3569-{ echo "$as_me:$LINENO: checking for $ac_func" >&5
##############################################
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-3647-fi
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure:3648:ac_res=`eval echo '${'$as_ac_var'}'`
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-3649- { echo "$as_me:$LINENO: result: $ac_res" >&5
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-3650-echo "${ECHO_T}$ac_res" >&6; }
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure:3651:if test `eval echo '${'$as_ac_var'}'` = yes; then
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-3652- cat >>confdefs.h <<_ACEOF
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure:3653:#define `echo "HAVE_$ac_func" | $as_tr_cpp` 1
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-3654-_ACEOF
##############################################
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-3665-do
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure:3666:as_ac_var=`echo "ac_cv_func_$ac_func" | $as_tr_sh`
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-3667-{ echo "$as_me:$LINENO: checking for $ac_func" >&5
##############################################
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-3745-fi
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure:3746:ac_res=`eval echo '${'$as_ac_var'}'`
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-3747- { echo "$as_me:$LINENO: result: $ac_res" >&5
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-3748-echo "${ECHO_T}$ac_res" >&6; }
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure:3749:if test `eval echo '${'$as_ac_var'}'` = yes; then
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-3750- cat >>confdefs.h <<_ACEOF
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure:3751:#define `echo "HAVE_$ac_func" | $as_tr_cpp` 1
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-3752-_ACEOF
##############################################
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-4085- # Check for GNU $ac_path_GREP
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure:4086:case `"$ac_path_GREP" --version 2>&1` in
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-4087-*GNU*)
##############################################
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-4099- diff "conftest.out" "conftest.nl" >/dev/null 2>&1 || break
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure:4100: ac_count=`expr $ac_count + 1`
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-4101- if test $ac_count -gt ${ac_path_GREP_max-0}; then
##############################################
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-4167- # Check for GNU $ac_path_EGREP
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure:4168:case `"$ac_path_EGREP" --version 2>&1` in
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-4169-*GNU*)
##############################################
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-4181- diff "conftest.out" "conftest.nl" >/dev/null 2>&1 || break
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure:4182: ac_count=`expr $ac_count + 1`
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-4183- if test $ac_count -gt ${ac_path_EGREP_max-0}; then
##############################################
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-4410-do
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure:4411:as_ac_Header=`echo "ac_cv_header_$ac_header" | $as_tr_sh`
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-4412-{ echo "$as_me:$LINENO: checking for $ac_header" >&5
##############################################
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-4453-fi
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure:4454:ac_res=`eval echo '${'$as_ac_Header'}'`
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-4455- { echo "$as_me:$LINENO: result: $ac_res" >&5
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-4456-echo "${ECHO_T}$ac_res" >&6; }
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure:4457:if test `eval echo '${'$as_ac_Header'}'` = yes; then
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-4458- cat >>confdefs.h <<_ACEOF
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure:4459:#define `echo "HAVE_$ac_header" | $as_tr_cpp` 1
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-4460-_ACEOF
##############################################
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-4936- ac_script='s/\$U\././;s/\.o$//;s/\.obj$//'
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure:4937: ac_i=`echo "$ac_i" | sed "$ac_script"`
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-4938- # 2. Prepend LIBOBJDIR. When used with automake>=1.10 LIBOBJDIR
##############################################
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-5066-do
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure:5067: if (set +x; test -z "`(eval $as_var=C; export $as_var) 2>&1`"); then
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-5068- eval $as_var=C; export $as_var
##############################################
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-5116- test "x$as_lineno_1" != "x$as_lineno_2" &&
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure:5117: test "x`expr $as_lineno_1 + 1`" = "x$as_lineno_2" || {
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-5118-
##############################################
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-5227- esac;
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure:5228: case `ls -ld'$as_ls_L_option' "$1" 2>/dev/null` in
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-5229- ???[sx]*):;;*)false;;esac;fi
##############################################
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-5298-configured by $0, generated by GNU Autoconf 2.61,
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure:5299: with options \\"`echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`\\"
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-5300-
##############################################
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-5317- --*=*)
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure:5318: ac_option=`expr "X$1" : 'X\([^=]*\)='`
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure:5319: ac_optarg=`expr "X$1" : 'X[^=]*=\(.*\)'`
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-5320- ac_shift=:
##############################################
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-5544-
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure:5545: if test `sed -n "s/.*$ac_delim\$/X/p" conf$$subs.sed | grep -c X` = 73; then
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-5546- break
##############################################
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-5555-
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure:5556:ac_eof=`sed -n '/^CEOF[0-9]*$/s/CEOF/0/p' conf$$subs.sed`
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-5557-if test -n "$ac_eof"; then
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure:5558: ac_eof=`echo "$ac_eof" | sort -nru | sed 1q`
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure:5559: ac_eof=`expr $ac_eof + 1`
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-5560-fi
##############################################
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-5693- case $as_dir in #(
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure:5694: *\'*) as_qdir=`echo "$as_dir" | sed "s/'/'\\\\\\\\''/g"`;; #(
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-5695- *) as_qdir=$as_dir;;
##############################################
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-5731-*)
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure:5732: ac_dir_suffix=/`echo "$ac_dir" | sed 's,^\.[\\/],,'`
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-5733- # A ".." for each directory in $ac_dir_suffix.
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure:5734: ac_top_builddir_sub=`echo "$ac_dir_suffix" | sed 's,/[^\\/]*,/..,g;s,/,,'`
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-5735- case $ac_top_builddir_sub in
##############################################
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-5804-
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure:5805:# Neutralize VPATH when `$srcdir' = `.'.
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-5806-# Shell code in configure.ac might set extrasub.
##############################################
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-5828-test -z "$ac_datarootdir_hack$ac_datarootdir_seen" &&
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure:5829: { ac_out=`sed -n '/\${datarootdir}/p' "$tmp/out"`; test -n "$ac_out"; } &&
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure:5830: { ac_out=`sed -n '/^[ ]*datarootdir[ ]*:*=/p' "$tmp/out"`; test -z "$ac_out"; } &&
cmtk-3.3.1p1+dfsg/Utilities/mxml/configure-5831- { echo "$as_me:$LINENO: WARNING: $ac_file contains a reference to the variable \`datarootdir'
##############################################
cmtk-3.3.1p1+dfsg/CMTKConfig.cmake.in-78- EXISTS "${CMTK_LIBRARY_DEPENDS_FILE}")
cmtk-3.3.1p1+dfsg/CMTKConfig.cmake.in:79: INCLUDE("${CMTK_LIBRARY_DEPENDS_FILE}")
cmtk-3.3.1p1+dfsg/CMTKConfig.cmake.in-80-ENDIF(NOT CMTK_NO_LIBRARY_DEPENDS AND
##############################################
cmtk-3.3.1p1+dfsg/contrib/munger/munger.in-89-} else {
cmtk-3.3.1p1+dfsg/contrib/munger/munger.in:90: print `echo User path is \$PATH` if $opt{v};
cmtk-3.3.1p1+dfsg/contrib/munger/munger.in-91-}
##############################################
cmtk-3.3.1p1+dfsg/contrib/munger/munger.in-409- if( $isWin ){
cmtk-3.3.1p1+dfsg/contrib/munger/munger.in:410: myexec("md \"$outlist\"") unless $opt{t}; # md creates folder tree by default. Martin
cmtk-3.3.1p1+dfsg/contrib/munger/munger.in-411- } else {
cmtk-3.3.1p1+dfsg/contrib/munger/munger.in:412: myexec("mkdir -p \"$outlist\"") unless $opt{t};
cmtk-3.3.1p1+dfsg/contrib/munger/munger.in-413- }
##############################################
cmtk-3.3.1p1+dfsg/contrib/munger/munger.in-440- # the glob here didn't work in perl (only sh)
cmtk-3.3.1p1+dfsg/contrib/munger/munger.in:441: #`gzip -f -9 \"${outlist}/registration\" \"${outlist}/level*/registration\"`;
cmtk-3.3.1p1+dfsg/contrib/munger/munger.in-442- # so try this:
cmtk-3.3.1p1+dfsg/contrib/munger/munger.in-443- # nb opt z indicates that we don't want to gzip; nb -f to over-write
cmtk-3.3.1p1+dfsg/contrib/munger/munger.in:444: # myexec( "find", $outlist, "-name", "registration", "-exec", "gzip", "-f", "-9", "{}", ";" ) unless $opt{z};
cmtk-3.3.1p1+dfsg/contrib/munger/munger.in-445-
##############################################
cmtk-3.3.1p1+dfsg/contrib/munger/munger.in-523- if( $isWin ){
cmtk-3.3.1p1+dfsg/contrib/munger/munger.in:524: myexec("md \"$outlist\"") unless $opt{t}; # md creates folder tree by default. Martin
cmtk-3.3.1p1+dfsg/contrib/munger/munger.in-525- } else {
cmtk-3.3.1p1+dfsg/contrib/munger/munger.in:526: myexec("mkdir -p \"$outlist\"") unless $opt{t};
cmtk-3.3.1p1+dfsg/contrib/munger/munger.in-527- }
##############################################
cmtk-3.3.1p1+dfsg/contrib/munger/munger.in-643- #print "Actually running cmd\n";
cmtk-3.3.1p1+dfsg/contrib/munger/munger.in:644: #print `$cmd`;
cmtk-3.3.1p1+dfsg/contrib/munger/munger.in-645- my $rval=myexec (@cmd);
##############################################
cmtk-3.3.1p1+dfsg/contrib/munger/munger.in-728- #print "Actually running cmd\n";
cmtk-3.3.1p1+dfsg/contrib/munger/munger.in:729: #print `$cmd`;
cmtk-3.3.1p1+dfsg/contrib/munger/munger.in-730- my $rval=myexec (@cmd);
##############################################
cmtk-3.3.1p1+dfsg/contrib/munger/munger.in-773- #print "Actually running cmd\n";
cmtk-3.3.1p1+dfsg/contrib/munger/munger.in:774: #print `$cmd`;
cmtk-3.3.1p1+dfsg/contrib/munger/munger.in-775- my $rval=myexec (@cmd);
##############################################
cmtk-3.3.1p1+dfsg/contrib/munger/munger.in-828-
cmtk-3.3.1p1+dfsg/contrib/munger/munger.in:829: my @reformattedImages=`find $rootDir/$reformatRoot/ -type d -name \'*.study\'`;
cmtk-3.3.1p1+dfsg/contrib/munger/munger.in-830- @channel1images=grep /^[^_]+01_/i, @reformattedImages;
##############################################
cmtk-3.3.1p1+dfsg/contrib/munger/munger.in-909- if( $isWin ){
cmtk-3.3.1p1+dfsg/contrib/munger/munger.in:910: myexec("md","$lockdir") unless -d $lockdir; # md creates folder tree by default. Martin
cmtk-3.3.1p1+dfsg/contrib/munger/munger.in-911- } else {
cmtk-3.3.1p1+dfsg/contrib/munger/munger.in:912: myexec("mkdir","-p","$lockdir") unless -d $lockdir;
cmtk-3.3.1p1+dfsg/contrib/munger/munger.in-913- }
##############################################
cmtk-3.3.1p1+dfsg/UseCMTK.cmake.in-38-IF(CMTK_BUILD_SETTINGS_FILE)
cmtk-3.3.1p1+dfsg/UseCMTK.cmake.in:39: INCLUDE(${CMAKE_ROOT}/Modules/CMakeImportBuildSettings.cmake)
cmtk-3.3.1p1+dfsg/UseCMTK.cmake.in-40- CMAKE_IMPORT_BUILD_SETTINGS(${CMTK_BUILD_SETTINGS_FILE})
##############################################
cmtk-3.3.1p1+dfsg/libs/Base/cmtkActiveShapeModel.cxx-64- {
cmtk-3.3.1p1+dfsg/libs/Base/cmtkActiveShapeModel.cxx:65: StdErr << "WARNING: number of modes of an ASM can be no higher than number of training samples.\n";
cmtk-3.3.1p1+dfsg/libs/Base/cmtkActiveShapeModel.cxx-66- this->Allocate( numberOfPoints, numberOfSamples );
##############################################
cmtk-3.3.1p1+dfsg/scripts/correct_dwi_distortion_and_motion.in-64-for bX in ${bXlist}; do
cmtk-3.3.1p1+dfsg/scripts/correct_dwi_distortion_and_motion.in:65: base=`basename $bX`
cmtk-3.3.1p1+dfsg/scripts/correct_dwi_distortion_and_motion.in:66: pref=`echo ${base} | sed 's/\..*//g'`
cmtk-3.3.1p1+dfsg/scripts/correct_dwi_distortion_and_motion.in-67-
##############################################
cmtk-3.3.1p1+dfsg/scripts/correct_dwi_distortion_and_motion.in-75-
cmtk-3.3.1p1+dfsg/scripts/correct_dwi_distortion_and_motion.in:76:b0FwdCorr=${outdir}/`basename ${b0Fwd}`
cmtk-3.3.1p1+dfsg/scripts/correct_dwi_distortion_and_motion.in:77:b0RevCorr=${outdir}/`basename ${b0Rev}`
cmtk-3.3.1p1+dfsg/scripts/correct_dwi_distortion_and_motion.in-78-if CMTK_needs_update_and_lock ${outdir}/dfield_fwd.nrrd ${b0Fwd} ${b0Rev}; then
##############################################
cmtk-3.3.1p1+dfsg/scripts/correct_dwi_distortion_and_motion.in-85-for bX in ${bXlist}; do
cmtk-3.3.1p1+dfsg/scripts/correct_dwi_distortion_and_motion.in:86: base=`basename $bX`
cmtk-3.3.1p1+dfsg/scripts/correct_dwi_distortion_and_motion.in:87: pref=`echo ${base} | sed 's/\..*//g'`
cmtk-3.3.1p1+dfsg/scripts/correct_dwi_distortion_and_motion.in-88- xform=${outdir}/eddy/b0_${pref}.xform
##############################################
cmtk-3.3.1p1+dfsg/scripts/correct_dwi_distortion_and_motion.in-119-for bX in ${b0FwdCorr} ${bXlist}; do
cmtk-3.3.1p1+dfsg/scripts/correct_dwi_distortion_and_motion.in:120: base=`basename $bX`
cmtk-3.3.1p1+dfsg/scripts/correct_dwi_distortion_and_motion.in-121- bXUnwarp=${outdir}/${base}
cmtk-3.3.1p1+dfsg/scripts/correct_dwi_distortion_and_motion.in:122: pref=`echo ${base} | sed 's/\..*//g'`
cmtk-3.3.1p1+dfsg/scripts/correct_dwi_distortion_and_motion.in-123-
##############################################
cmtk-3.3.1p1+dfsg/scripts/PackageMacOS-38-
cmtk-3.3.1p1+dfsg/scripts/PackageMacOS:39:SOURCEDIR=`dirname $0`
cmtk-3.3.1p1+dfsg/scripts/PackageMacOS:40:SOURCEDIR=`dirname ${SOURCEDIR}`
cmtk-3.3.1p1+dfsg/scripts/PackageMacOS:41:SOURCEDIR=`cd ${SOURCEDIR}; pwd`
cmtk-3.3.1p1+dfsg/scripts/PackageMacOS-42-
##############################################
cmtk-3.3.1p1+dfsg/scripts/groupwise_reformat.in-81-
cmtk-3.3.1p1+dfsg/scripts/groupwise_reformat.in:82: local base=`basename $target | sed 's/\..*//g'`
cmtk-3.3.1p1+dfsg/scripts/groupwise_reformat.in:83: local dir=`dirname $target`
cmtk-3.3.1p1+dfsg/scripts/groupwise_reformat.in-84-
##############################################
cmtk-3.3.1p1+dfsg/scripts/groupwise_reformat.in-86- while [ "${base}" != "" ]; do
cmtk-3.3.1p1+dfsg/scripts/groupwise_reformat.in:87: pattern=`eval "echo $pattern | sed 's/%${idx}/${base}/g'"`
cmtk-3.3.1p1+dfsg/scripts/groupwise_reformat.in-88-
cmtk-3.3.1p1+dfsg/scripts/groupwise_reformat.in:89: base=`basename $dir | sed 's/\.,*//g'`
cmtk-3.3.1p1+dfsg/scripts/groupwise_reformat.in:90: dir=`dirname $dir`
cmtk-3.3.1p1+dfsg/scripts/groupwise_reformat.in-91-
##############################################
cmtk-3.3.1p1+dfsg/scripts/groupwise_reformat.in-113-
cmtk-3.3.1p1+dfsg/scripts/groupwise_reformat.in:114: outputPath=`make_output_path ${target} ${outPattern}`
cmtk-3.3.1p1+dfsg/scripts/groupwise_reformat.in-115-
##############################################
cmtk-3.3.1p1+dfsg/scripts/groupwise_reformat.in-126- if expr "${line}" : "target" >/dev/null; then
cmtk-3.3.1p1+dfsg/scripts/groupwise_reformat.in:127: target=`echo ${line} | sed 's/target \"//g; s/\".*//g'`
cmtk-3.3.1p1+dfsg/scripts/groupwise_reformat.in-128- process_target ${target}
##############################################
cmtk-3.3.1p1+dfsg/scripts/cmtk_locking_procmail.sh.in-110-
cmtk-3.3.1p1+dfsg/scripts/cmtk_locking_procmail.sh.in:111: mkdir -p `dirname ${lockfile}`
cmtk-3.3.1p1+dfsg/scripts/cmtk_locking_procmail.sh.in-112- if lockfile -0 -r0 ${lockfile}; then
##############################################
cmtk-3.3.1p1+dfsg/scripts/correct_dwi_distortion.in-64-for bX in ${bXlist}; do
cmtk-3.3.1p1+dfsg/scripts/correct_dwi_distortion.in:65: base=`basename $bX`
cmtk-3.3.1p1+dfsg/scripts/correct_dwi_distortion.in:66: pref=`echo ${base} | sed 's/\..*//g'`
cmtk-3.3.1p1+dfsg/scripts/correct_dwi_distortion.in-67-
##############################################
cmtk-3.3.1p1+dfsg/scripts/correct_dwi_distortion.in-75-
cmtk-3.3.1p1+dfsg/scripts/correct_dwi_distortion.in:76:b0FwdCorr=${outdir}/`basename ${b0Fwd}`
cmtk-3.3.1p1+dfsg/scripts/correct_dwi_distortion.in:77:b0RevCorr=${outdir}/`basename ${b0Rev}`
cmtk-3.3.1p1+dfsg/scripts/correct_dwi_distortion.in-78-if CMTK_needs_update_and_lock ${outdir}/dfield_fwd.nrrd ${b0Fwd} ${b0Rev}; then
##############################################
cmtk-3.3.1p1+dfsg/scripts/correct_dwi_distortion.in-84-for bX in ${bXlist}; do
cmtk-3.3.1p1+dfsg/scripts/correct_dwi_distortion.in:85: base=`basename $bX`
cmtk-3.3.1p1+dfsg/scripts/correct_dwi_distortion.in:86: pref=`echo ${base} | sed 's/\..*//g'`
cmtk-3.3.1p1+dfsg/scripts/correct_dwi_distortion.in-87- xform=${outdir}/eddy/b0_${pref}.xform
##############################################
cmtk-3.3.1p1+dfsg/scripts/correct_nex_motion.in-57-for f in ${fltfiles}; do
cmtk-3.3.1p1+dfsg/scripts/correct_nex_motion.in:58: name=`basename ${f}`
cmtk-3.3.1p1+dfsg/scripts/correct_nex_motion.in-59-
##############################################
cmtk-3.3.1p1+dfsg/scripts/multiatlas.in-60- ${CMTK_BINARY_DIR}/registrationx --echo --init com --auto-multi-levels 5 --omit-original-data --delta-f-threshold 0.01 --dofs 6,9 --ncc --pad-ref 0 --symmetric -o ${xfm} ${TARGET} ${atlas}
cmtk-3.3.1p1+dfsg/scripts/multiatlas.in:61: idx=`expr ${idx} + 1`
cmtk-3.3.1p1+dfsg/scripts/multiatlas.in-62-done
##############################################
cmtk-3.3.1p1+dfsg/scripts/multiatlas.in-68- ${CMTK_BINARY_DIR}/warpx --echo --grid-spacing 80 --grid-refine 3 --min-stepsize 0.25 --max-stepsize 16 --smoothness-constraint-weight 1e-1 --omit-original-data --delta-f-threshold 0.01 --fast --nmi -o ${ffd} --initial ${xfm} ${TARGET} ${atlas}
cmtk-3.3.1p1+dfsg/scripts/multiatlas.in:69: idx=`expr ${idx} + 1`
cmtk-3.3.1p1+dfsg/scripts/multiatlas.in-70-done
##############################################
cmtk-3.3.1p1+dfsg/scripts/multiatlas.in-76- ${CMTK_BINARY_DIR}/reformatx --floating ${atlas} --cubic -o ${out} ${TARGET} ${ffd}
cmtk-3.3.1p1+dfsg/scripts/multiatlas.in:77: idx=`expr ${idx} + 1`
cmtk-3.3.1p1+dfsg/scripts/multiatlas.in-78-done
##############################################
cmtk-3.3.1p1+dfsg/scripts/multiatlas.in-89-
cmtk-3.3.1p1+dfsg/scripts/multiatlas.in:90: idx=`expr ${idx} + 1`
cmtk-3.3.1p1+dfsg/scripts/multiatlas.in-91-done
##############################################
cmtk-3.3.1p1+dfsg/scripts/iterative_shape_averaging.in-73-
cmtk-3.3.1p1+dfsg/scripts/iterative_shape_averaging.in:74: local ref_name=`basename ${in_ref} | sed 's/\..*//g'`
cmtk-3.3.1p1+dfsg/scripts/iterative_shape_averaging.in-75- for in_flt in ${images}; do
cmtk-3.3.1p1+dfsg/scripts/iterative_shape_averaging.in:76: local flt_name=`basename ${in_flt} | sed 's/\..*//g'`
cmtk-3.3.1p1+dfsg/scripts/iterative_shape_averaging.in-77- local out_xfm=isa/pass0/${flt_name}.xform
##############################################
cmtk-3.3.1p1+dfsg/scripts/iterative_shape_averaging.in-104-
cmtk-3.3.1p1+dfsg/scripts/iterative_shape_averaging.in:105: local cpspacing=`cmtk describe --machine-readable ${initial_ref} | fgrep FOV | cut -f2 | cmtk sequence | fgrep STATval | cut -f2`
cmtk-3.3.1p1+dfsg/scripts/iterative_shape_averaging.in-106- for ((i=1;i<iteration;++i)); do
cmtk-3.3.1p1+dfsg/scripts/iterative_shape_averaging.in:107: cpspacing=`echo ${cpspacing} | gawk '{print $1 / 2}'`
cmtk-3.3.1p1+dfsg/scripts/iterative_shape_averaging.in-108- done
##############################################
cmtk-3.3.1p1+dfsg/scripts/iterative_shape_averaging.in-117- local curr=$1
cmtk-3.3.1p1+dfsg/scripts/iterative_shape_averaging.in:118: local prev=`expr ${curr} - 1`
cmtk-3.3.1p1+dfsg/scripts/iterative_shape_averaging.in-119-
##############################################
cmtk-3.3.1p1+dfsg/scripts/iterative_shape_averaging.in-126-
cmtk-3.3.1p1+dfsg/scripts/iterative_shape_averaging.in:127: local warp_args=`get_level_warp_args ${curr} ${initial_ref}`
cmtk-3.3.1p1+dfsg/scripts/iterative_shape_averaging.in-128-
cmtk-3.3.1p1+dfsg/scripts/iterative_shape_averaging.in-129- for in_flt in ${images}; do
cmtk-3.3.1p1+dfsg/scripts/iterative_shape_averaging.in:130: local flt_name=`basename ${in_flt} | sed 's/\..*//g'`
cmtk-3.3.1p1+dfsg/scripts/iterative_shape_averaging.in-131-
##############################################
cmtk-3.3.1p1+dfsg/scripts/cmtk_functions.sh.in-51- for i in $*; do
cmtk-3.3.1p1+dfsg/scripts/cmtk_functions.sh.in:52: local img=`echo ${i} | sed 's/\.hdr/\.img/g'`
cmtk-3.3.1p1+dfsg/scripts/cmtk_functions.sh.in-53- gzip -9f ${img}
##############################################
cmtk-3.3.1p1+dfsg/scripts/cmtk_locking.sh.in-106-
cmtk-3.3.1p1+dfsg/scripts/cmtk_locking.sh.in:107: mkdir -p `dirname ${lockfile}`
cmtk-3.3.1p1+dfsg/scripts/cmtk_locking.sh.in-108- echo ${hostpid} >> ${lockfile}
cmtk-3.3.1p1+dfsg/scripts/cmtk_locking.sh.in-109-
cmtk-3.3.1p1+dfsg/scripts/cmtk_locking.sh.in:110: if [ `head -n 1 ${lockfile}` != ${hostpid} ]; then
cmtk-3.3.1p1+dfsg/scripts/cmtk_locking.sh.in-111- # first one to write PID was not us
##############################################
cmtk-3.3.1p1+dfsg/CMake/FindCUDA.cmake-311- #message("including dependency_file = ${dependency_file}")
cmtk-3.3.1p1+dfsg/CMake/FindCUDA.cmake:312: include(${dependency_file})
cmtk-3.3.1p1+dfsg/CMake/FindCUDA.cmake-313-
##############################################
cmtk-3.3.1p1+dfsg/CMake/FindConfigDCMTK.cmake-210-
cmtk-3.3.1p1+dfsg/CMake/FindConfigDCMTK.cmake:211:include(${CMAKE_ROOT}/Modules/FindPackageHandleStandardArgs.cmake)
cmtk-3.3.1p1+dfsg/CMake/FindConfigDCMTK.cmake-212-find_package_handle_standard_args(DCMTK DEFAULT_MSG
##############################################
cmtk-3.3.1p1+dfsg/debian/patches/fix_cmake_version_comparison-10- ELSE(CMTK_BUILD_SQLITE)
cmtk-3.3.1p1+dfsg/debian/patches/fix_cmake_version_comparison:11: INCLUDE(${CMAKE_CURRENT_SOURCE_DIR}/CMake/FindSQLite3.cmake)
cmtk-3.3.1p1+dfsg/debian/patches/fix_cmake_version_comparison-12-- IF(SQLITE3_FOUND AND SQLITE3_VERSION STRGREATER "3.5.0")
##############################################
cmtk-3.3.1p1+dfsg/.pc/up_assure_no_as_needed_for_checklibdep/CMake/FindConfigDCMTK.cmake-210-
cmtk-3.3.1p1+dfsg/.pc/up_assure_no_as_needed_for_checklibdep/CMake/FindConfigDCMTK.cmake:211:include(${CMAKE_ROOT}/Modules/FindPackageHandleStandardArgs.cmake)
cmtk-3.3.1p1+dfsg/.pc/up_assure_no_as_needed_for_checklibdep/CMake/FindConfigDCMTK.cmake-212-find_package_handle_standard_args(DCMTK DEFAULT_MSG
##############################################
cmtk-3.3.1p1+dfsg/.pc/fix_cmake_version_comparison/CMakeLists.txt-54-# Test for some required system information.
cmtk-3.3.1p1+dfsg/.pc/fix_cmake_version_comparison/CMakeLists.txt:55:INCLUDE (${CMAKE_ROOT}/Modules/CMakeDetermineSystem.cmake)
cmtk-3.3.1p1+dfsg/.pc/fix_cmake_version_comparison/CMakeLists.txt:56:INCLUDE (${CMAKE_ROOT}/Modules/CMakeBackwardCompatibilityC.cmake)
cmtk-3.3.1p1+dfsg/.pc/fix_cmake_version_comparison/CMakeLists.txt:57:INCLUDE (${CMAKE_ROOT}/Modules/CMakeBackwardCompatibilityCXX.cmake)
cmtk-3.3.1p1+dfsg/.pc/fix_cmake_version_comparison/CMakeLists.txt-58-
##############################################
cmtk-3.3.1p1+dfsg/.pc/fix_cmake_version_comparison/CMakeLists.txt-169-# Test NaN high bit
cmtk-3.3.1p1+dfsg/.pc/fix_cmake_version_comparison/CMakeLists.txt:170:INCLUDE(${CMAKE_CURRENT_SOURCE_DIR}/CMake/TestQnanhibit.cmake)
cmtk-3.3.1p1+dfsg/.pc/fix_cmake_version_comparison/CMakeLists.txt-171-TEST_QNANHIBIT(QNANHIBIT_VALUE ${CMAKE_CURRENT_SOURCE_DIR}/CMake)
##############################################
cmtk-3.3.1p1+dfsg/.pc/fix_cmake_version_comparison/CMakeLists.txt-295- MESSAGE("${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} STRLESS 2.8")
cmtk-3.3.1p1+dfsg/.pc/fix_cmake_version_comparison/CMakeLists.txt:296: INCLUDE(${CMAKE_CURRENT_SOURCE_DIR}/CMake/FindCUDA.cmake)
cmtk-3.3.1p1+dfsg/.pc/fix_cmake_version_comparison/CMakeLists.txt-297- ELSE (${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} STRLESS "2.8")
##############################################
cmtk-3.3.1p1+dfsg/.pc/fix_cmake_version_comparison/CMakeLists.txt-307-
cmtk-3.3.1p1+dfsg/.pc/fix_cmake_version_comparison/CMakeLists.txt:308:INCLUDE(${CMAKE_ROOT}/Modules/CheckCXXSourceCompiles.cmake)
cmtk-3.3.1p1+dfsg/.pc/fix_cmake_version_comparison/CMakeLists.txt-309-CHECK_CXX_SOURCE_COMPILES("class A {}; class B : public A {}; int main() { int size = 10; B array[size]; }" CMTK_COMPILER_VAR_AUTO_ARRAYSIZE)
##############################################
cmtk-3.3.1p1+dfsg/.pc/fix_cmake_version_comparison/CMakeLists.txt-314-
cmtk-3.3.1p1+dfsg/.pc/fix_cmake_version_comparison/CMakeLists.txt:315:INCLUDE(${CMAKE_ROOT}/Modules/CTest.cmake)
cmtk-3.3.1p1+dfsg/.pc/fix_cmake_version_comparison/CMakeLists.txt-316-MARK_AS_ADVANCED(TCL_TCLSH DART_ROOT)
##############################################
cmtk-3.3.1p1+dfsg/.pc/fix_cmake_version_comparison/CMakeLists.txt-392-
cmtk-3.3.1p1+dfsg/.pc/fix_cmake_version_comparison/CMakeLists.txt:393:INCLUDE(${CMAKE_CURRENT_SOURCE_DIR}/CMake/FindMXML.cmake)
cmtk-3.3.1p1+dfsg/.pc/fix_cmake_version_comparison/CMakeLists.txt-394-IF(CMTK_BUILD_MXML)
##############################################
cmtk-3.3.1p1+dfsg/.pc/fix_cmake_version_comparison/CMakeLists.txt-439-IF(CMTK_USE_LZMA)
cmtk-3.3.1p1+dfsg/.pc/fix_cmake_version_comparison/CMakeLists.txt:440: INCLUDE(${CMAKE_CURRENT_SOURCE_DIR}/CMake/FindLZMA.cmake)
cmtk-3.3.1p1+dfsg/.pc/fix_cmake_version_comparison/CMakeLists.txt-441- IF(LZMA_FOUND)
##############################################
cmtk-3.3.1p1+dfsg/.pc/fix_cmake_version_comparison/CMakeLists.txt-459-IF(CMTK_USE_DCMTK)
cmtk-3.3.1p1+dfsg/.pc/fix_cmake_version_comparison/CMakeLists.txt:460: INCLUDE(${CMAKE_CURRENT_SOURCE_DIR}/CMake/FindConfigDCMTK.cmake)
cmtk-3.3.1p1+dfsg/.pc/fix_cmake_version_comparison/CMakeLists.txt-461-
##############################################
cmtk-3.3.1p1+dfsg/.pc/fix_cmake_version_comparison/CMakeLists.txt-514- ELSE(CMTK_BUILD_SQLITE)
cmtk-3.3.1p1+dfsg/.pc/fix_cmake_version_comparison/CMakeLists.txt:515: INCLUDE(${CMAKE_CURRENT_SOURCE_DIR}/CMake/FindSQLite3.cmake)
cmtk-3.3.1p1+dfsg/.pc/fix_cmake_version_comparison/CMakeLists.txt-516- IF(SQLITE3_FOUND AND SQLITE3_VERSION STRGREATER "3.5.0")
##############################################
cmtk-3.3.1p1+dfsg/.pc/fix_cmake_version_comparison/CMakeLists.txt-552-
cmtk-3.3.1p1+dfsg/.pc/fix_cmake_version_comparison/CMakeLists.txt:553:INCLUDE(${CMAKE_CURRENT_SOURCE_DIR}/cmtkConfigureCPack.cmake)
cmtk-3.3.1p1+dfsg/.pc/fix_cmake_version_comparison/CMakeLists.txt-554-
##############################################
cmtk-3.3.1p1+dfsg/.pc/fix_cmake_version_comparison/CMakeLists.txt-569- MESSAGE("Qt4 Found OK (${qt_version_str})")
cmtk-3.3.1p1+dfsg/.pc/fix_cmake_version_comparison/CMakeLists.txt:570: INCLUDE(${QT_USE_FILE})
cmtk-3.3.1p1+dfsg/.pc/fix_cmake_version_comparison/CMakeLists.txt-571- ELSE(QT_FOUND)
##############################################
cmtk-3.3.1p1+dfsg/.pc/fix_cmake_version_comparison/CMakeLists.txt-593-IF(CMTK_USE_FFTW)
cmtk-3.3.1p1+dfsg/.pc/fix_cmake_version_comparison/CMakeLists.txt:594: INCLUDE(${CMAKE_CURRENT_SOURCE_DIR}/CMake/FindFFTW.cmake)
cmtk-3.3.1p1+dfsg/.pc/fix_cmake_version_comparison/CMakeLists.txt-595-
##############################################
cmtk-3.3.1p1+dfsg/.pc/fix_cmake_version_comparison/CMakeLists.txt-625-# Create the list of include directories needed for header files.
cmtk-3.3.1p1+dfsg/.pc/fix_cmake_version_comparison/CMakeLists.txt:626:INCLUDE(${CMTK_SOURCE_DIR}/cmtkIncludeDirectories.cmake)
cmtk-3.3.1p1+dfsg/.pc/fix_cmake_version_comparison/CMakeLists.txt-627-
##############################################
cmtk-3.3.1p1+dfsg/.pc/fix_cmake_version_comparison/CMakeLists.txt-662-# Create the CMTKConfig.cmake file containing the CMTK configuration.
cmtk-3.3.1p1+dfsg/.pc/fix_cmake_version_comparison/CMakeLists.txt:663:INCLUDE(${CMTK_SOURCE_DIR}/cmtkGenerateCMTKConfig.cmake)
cmtk-3.3.1p1+dfsg/.pc/fix_cmake_version_comparison/CMakeLists.txt-664-
##############################################
cmtk-3.3.1p1+dfsg/CMakeLists.txt-54-# Test for some required system information.
cmtk-3.3.1p1+dfsg/CMakeLists.txt:55:INCLUDE (${CMAKE_ROOT}/Modules/CMakeDetermineSystem.cmake)
cmtk-3.3.1p1+dfsg/CMakeLists.txt:56:INCLUDE (${CMAKE_ROOT}/Modules/CMakeBackwardCompatibilityC.cmake)
cmtk-3.3.1p1+dfsg/CMakeLists.txt:57:INCLUDE (${CMAKE_ROOT}/Modules/CMakeBackwardCompatibilityCXX.cmake)
cmtk-3.3.1p1+dfsg/CMakeLists.txt-58-
##############################################
cmtk-3.3.1p1+dfsg/CMakeLists.txt-169-# Test NaN high bit
cmtk-3.3.1p1+dfsg/CMakeLists.txt:170:INCLUDE(${CMAKE_CURRENT_SOURCE_DIR}/CMake/TestQnanhibit.cmake)
cmtk-3.3.1p1+dfsg/CMakeLists.txt-171-TEST_QNANHIBIT(QNANHIBIT_VALUE ${CMAKE_CURRENT_SOURCE_DIR}/CMake)
##############################################
cmtk-3.3.1p1+dfsg/CMakeLists.txt-295- MESSAGE("${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} STRLESS 2.8")
cmtk-3.3.1p1+dfsg/CMakeLists.txt:296: INCLUDE(${CMAKE_CURRENT_SOURCE_DIR}/CMake/FindCUDA.cmake)
cmtk-3.3.1p1+dfsg/CMakeLists.txt-297- ELSE (${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} STRLESS "2.8")
##############################################
cmtk-3.3.1p1+dfsg/CMakeLists.txt-307-
cmtk-3.3.1p1+dfsg/CMakeLists.txt:308:INCLUDE(${CMAKE_ROOT}/Modules/CheckCXXSourceCompiles.cmake)
cmtk-3.3.1p1+dfsg/CMakeLists.txt-309-CHECK_CXX_SOURCE_COMPILES("class A {}; class B : public A {}; int main() { int size = 10; B array[size]; }" CMTK_COMPILER_VAR_AUTO_ARRAYSIZE)
##############################################
cmtk-3.3.1p1+dfsg/CMakeLists.txt-314-
cmtk-3.3.1p1+dfsg/CMakeLists.txt:315:INCLUDE(${CMAKE_ROOT}/Modules/CTest.cmake)
cmtk-3.3.1p1+dfsg/CMakeLists.txt-316-MARK_AS_ADVANCED(TCL_TCLSH DART_ROOT)
##############################################
cmtk-3.3.1p1+dfsg/CMakeLists.txt-392-
cmtk-3.3.1p1+dfsg/CMakeLists.txt:393:INCLUDE(${CMAKE_CURRENT_SOURCE_DIR}/CMake/FindMXML.cmake)
cmtk-3.3.1p1+dfsg/CMakeLists.txt-394-IF(CMTK_BUILD_MXML)
##############################################
cmtk-3.3.1p1+dfsg/CMakeLists.txt-439-IF(CMTK_USE_LZMA)
cmtk-3.3.1p1+dfsg/CMakeLists.txt:440: INCLUDE(${CMAKE_CURRENT_SOURCE_DIR}/CMake/FindLZMA.cmake)
cmtk-3.3.1p1+dfsg/CMakeLists.txt-441- IF(LZMA_FOUND)
##############################################
cmtk-3.3.1p1+dfsg/CMakeLists.txt-459-IF(CMTK_USE_DCMTK)
cmtk-3.3.1p1+dfsg/CMakeLists.txt:460: INCLUDE(${CMAKE_CURRENT_SOURCE_DIR}/CMake/FindConfigDCMTK.cmake)
cmtk-3.3.1p1+dfsg/CMakeLists.txt-461-
##############################################
cmtk-3.3.1p1+dfsg/CMakeLists.txt-514- ELSE(CMTK_BUILD_SQLITE)
cmtk-3.3.1p1+dfsg/CMakeLists.txt:515: INCLUDE(${CMAKE_CURRENT_SOURCE_DIR}/CMake/FindSQLite3.cmake)
cmtk-3.3.1p1+dfsg/CMakeLists.txt-516- IF(SQLITE3_FOUND AND SQLITE3_VERSION VERSION_GREATER "3.5.0")
##############################################
cmtk-3.3.1p1+dfsg/CMakeLists.txt-552-
cmtk-3.3.1p1+dfsg/CMakeLists.txt:553:INCLUDE(${CMAKE_CURRENT_SOURCE_DIR}/cmtkConfigureCPack.cmake)
cmtk-3.3.1p1+dfsg/CMakeLists.txt-554-
##############################################
cmtk-3.3.1p1+dfsg/CMakeLists.txt-569- MESSAGE("Qt4 Found OK (${qt_version_str})")
cmtk-3.3.1p1+dfsg/CMakeLists.txt:570: INCLUDE(${QT_USE_FILE})
cmtk-3.3.1p1+dfsg/CMakeLists.txt-571- ELSE(QT_FOUND)
##############################################
cmtk-3.3.1p1+dfsg/CMakeLists.txt-593-IF(CMTK_USE_FFTW)
cmtk-3.3.1p1+dfsg/CMakeLists.txt:594: INCLUDE(${CMAKE_CURRENT_SOURCE_DIR}/CMake/FindFFTW.cmake)
cmtk-3.3.1p1+dfsg/CMakeLists.txt-595-
##############################################
cmtk-3.3.1p1+dfsg/CMakeLists.txt-625-# Create the list of include directories needed for header files.
cmtk-3.3.1p1+dfsg/CMakeLists.txt:626:INCLUDE(${CMTK_SOURCE_DIR}/cmtkIncludeDirectories.cmake)
cmtk-3.3.1p1+dfsg/CMakeLists.txt-627-
##############################################
cmtk-3.3.1p1+dfsg/CMakeLists.txt-662-# Create the CMTKConfig.cmake file containing the CMTK configuration.
cmtk-3.3.1p1+dfsg/CMakeLists.txt:663:INCLUDE(${CMTK_SOURCE_DIR}/cmtkGenerateCMTKConfig.cmake)
cmtk-3.3.1p1+dfsg/CMakeLists.txt-664-