===========================================================
.___ __ __
_________________ __ __ __| _/|__|/ |_
/ ___\_` __ \__ \ | | \/ __ | | \\_ __\
/ /_/ > | \// __ \| | / /_/ | | || |
\___ /|__| (____ /____/\____ | |__||__|
/_____/ \/ \/
grep rough audit - static analysis tool
v2.8 written by @Wireghoul
=================================[justanotherhacker.com]===
hmmer2-2.3.2+dfsg/config.guess-36-
hmmer2-2.3.2+dfsg/config.guess:37:me=`echo "$0" | sed -e 's,.*/,,'`
hmmer2-2.3.2+dfsg/config.guess-38-
##############################################
hmmer2-2.3.2+dfsg/config.guess-168- # The OS release
hmmer2-2.3.2+dfsg/config.guess:169: release=`echo ${UNAME_RELEASE}|sed -e 's/[-_].*/\./'`
hmmer2-2.3.2+dfsg/config.guess-170- # Since CPU_TYPE-MANUFACTURER-KERNEL-OPERATING_SYSTEM:
##############################################
hmmer2-2.3.2+dfsg/config.guess-176- if test $UNAME_RELEASE = "V4.0"; then
hmmer2-2.3.2+dfsg/config.guess:177: UNAME_RELEASE=`/usr/sbin/sizer -v | awk '{print $3}'`
hmmer2-2.3.2+dfsg/config.guess-178- fi
##############################################
hmmer2-2.3.2+dfsg/config.guess-210- if test "$?" = 0 ; then
hmmer2-2.3.2+dfsg/config.guess:211: case `./$dummy` in
hmmer2-2.3.2+dfsg/config.guess-212- 0-0)
##############################################
hmmer2-2.3.2+dfsg/config.guess-232- rm -f $dummy.s $dummy
hmmer2-2.3.2+dfsg/config.guess:233: echo ${UNAME_MACHINE}-dec-osf`echo ${UNAME_RELEASE} | sed -e 's/^[VTX]//' | tr 'ABCDEFGHIJKLMNOPQRSTUVWXYZ' 'abcdefghijklmnopqrstuvwxyz'`
hmmer2-2.3.2+dfsg/config.guess-234- exit 0 ;;
##############################################
hmmer2-2.3.2+dfsg/config.guess-291- sun4H:SunOS:5.*:*)
hmmer2-2.3.2+dfsg/config.guess:292: echo sparc-hal-solaris2`echo ${UNAME_RELEASE}|sed -e 's/[^.]*//'`
hmmer2-2.3.2+dfsg/config.guess-293- exit 0 ;;
hmmer2-2.3.2+dfsg/config.guess-294- sun4*:SunOS:5.*:* | tadpole*:SunOS:5.*:*)
hmmer2-2.3.2+dfsg/config.guess:295: echo sparc-sun-solaris2`echo ${UNAME_RELEASE}|sed -e 's/[^.]*//'`
hmmer2-2.3.2+dfsg/config.guess-296- exit 0 ;;
hmmer2-2.3.2+dfsg/config.guess-297- i86pc:SunOS:5.*:*)
hmmer2-2.3.2+dfsg/config.guess:298: echo i386-pc-solaris2`echo ${UNAME_RELEASE}|sed -e 's/[^.]*//'`
hmmer2-2.3.2+dfsg/config.guess-299- exit 0 ;;
##############################################
hmmer2-2.3.2+dfsg/config.guess-303- # it's likely to be more like Solaris than SunOS4.
hmmer2-2.3.2+dfsg/config.guess:304: echo sparc-sun-solaris3`echo ${UNAME_RELEASE}|sed -e 's/[^.]*//'`
hmmer2-2.3.2+dfsg/config.guess-305- exit 0 ;;
##############################################
hmmer2-2.3.2+dfsg/config.guess-312- # Japanese Language versions have a version number like `4.1.3-JL'.
hmmer2-2.3.2+dfsg/config.guess:313: echo sparc-sun-sunos`echo ${UNAME_RELEASE}|sed -e 's/-/_/'`
hmmer2-2.3.2+dfsg/config.guess-314- exit 0 ;;
##############################################
hmmer2-2.3.2+dfsg/config.guess-318- sun*:*:4.2BSD:*)
hmmer2-2.3.2+dfsg/config.guess:319: UNAME_RELEASE=`(head -1 /etc/motd | awk '{print substr($5,1,3)}') 2>/dev/null`
hmmer2-2.3.2+dfsg/config.guess-320- test "x${UNAME_RELEASE}" = "x" && UNAME_RELEASE=3
##############################################
hmmer2-2.3.2+dfsg/config.guess-412- $CC_FOR_BUILD $dummy.c -o $dummy \
hmmer2-2.3.2+dfsg/config.guess:413: && ./$dummy `echo "${UNAME_RELEASE}" | sed -n 's/\([0-9]*\).*/\1/p'` \
hmmer2-2.3.2+dfsg/config.guess-414- && rm -f $dummy.c $dummy && exit 0
##############################################
hmmer2-2.3.2+dfsg/config.guess-462- *:IRIX*:*:*)
hmmer2-2.3.2+dfsg/config.guess:463: echo mips-sgi-irix`echo ${UNAME_RELEASE}|sed -e 's/-/_/g'`
hmmer2-2.3.2+dfsg/config.guess-464- exit 0 ;;
##############################################
hmmer2-2.3.2+dfsg/config.guess-502- *:AIX:*:[45])
hmmer2-2.3.2+dfsg/config.guess:503: IBM_CPU_ID=`/usr/sbin/lsdev -C -c processor -S available | head -1 | awk '{ print $1 }'`
hmmer2-2.3.2+dfsg/config.guess-504- if /usr/sbin/lsattr -El ${IBM_CPU_ID} | grep ' POWER' >/dev/null 2>&1; then
##############################################
hmmer2-2.3.2+dfsg/config.guess-537- 9000/[34678]??:HP-UX:*:*)
hmmer2-2.3.2+dfsg/config.guess:538: HPUX_REV=`echo ${UNAME_RELEASE}|sed -e 's/[^.]*.[0B]*//'`
hmmer2-2.3.2+dfsg/config.guess-539- case "${UNAME_MACHINE}" in
##############################################
hmmer2-2.3.2+dfsg/config.guess-593- eval $set_cc_for_build
hmmer2-2.3.2+dfsg/config.guess:594: (CCOPTS= $CC_FOR_BUILD $dummy.c -o $dummy 2>/dev/null ) && HP_ARCH=`./$dummy`
hmmer2-2.3.2+dfsg/config.guess-595- if test -z "$HP_ARCH"; then HP_ARCH=hppa; fi
##############################################
hmmer2-2.3.2+dfsg/config.guess-601- ia64:HP-UX:*:*)
hmmer2-2.3.2+dfsg/config.guess:602: HPUX_REV=`echo ${UNAME_RELEASE}|sed -e 's/[^.]*.[0B]*//'`
hmmer2-2.3.2+dfsg/config.guess-603- echo ia64-hp-hpux${HPUX_REV}
##############################################
hmmer2-2.3.2+dfsg/config.guess-711- FUJITSU_SYS=`uname -p | tr 'ABCDEFGHIJKLMNOPQRSTUVWXYZ' 'abcdefghijklmnopqrstuvwxyz' | sed -e 's/\///'`
hmmer2-2.3.2+dfsg/config.guess:712: FUJITSU_REL=`echo ${UNAME_RELEASE} | sed -e 's/ /_/'`
hmmer2-2.3.2+dfsg/config.guess-713- echo "${FUJITSU_PROC}-fujitsu-${FUJITSU_SYS}${FUJITSU_REL}"
##############################################
hmmer2-2.3.2+dfsg/config.guess-727- *:FreeBSD:*:*)
hmmer2-2.3.2+dfsg/config.guess:728: echo ${UNAME_MACHINE}-unknown-freebsd`echo ${UNAME_RELEASE}|sed -e 's/[-(].*//'`
hmmer2-2.3.2+dfsg/config.guess-729- exit 0 ;;
hmmer2-2.3.2+dfsg/config.guess-730- *:OpenBSD:*:*)
hmmer2-2.3.2+dfsg/config.guess:731: echo ${UNAME_MACHINE}-unknown-openbsd`echo ${UNAME_RELEASE}|sed -e 's/[-_].*/\./'`
hmmer2-2.3.2+dfsg/config.guess-732- exit 0 ;;
##############################################
hmmer2-2.3.2+dfsg/config.guess-754- prep*:SunOS:5.*:*)
hmmer2-2.3.2+dfsg/config.guess:755: echo powerpcle-unknown-solaris2`echo ${UNAME_RELEASE}|sed -e 's/[^.]*//'`
hmmer2-2.3.2+dfsg/config.guess-756- exit 0 ;;
hmmer2-2.3.2+dfsg/config.guess-757- *:GNU:*:*)
hmmer2-2.3.2+dfsg/config.guess:758: echo `echo ${UNAME_MACHINE}|sed -e 's,[-/].*$,,'`-unknown-gnu`echo ${UNAME_RELEASE}|sed -e 's,/.*$,,'`
hmmer2-2.3.2+dfsg/config.guess-759- exit 0 ;;
##############################################
hmmer2-2.3.2+dfsg/config.guess-888- i*86:*:4.*:* | i*86:SYSTEM_V:4.*:*)
hmmer2-2.3.2+dfsg/config.guess:889: UNAME_REL=`echo ${UNAME_RELEASE} | sed 's/\/MP$//'`
hmmer2-2.3.2+dfsg/config.guess-890- if grep Novell /usr/include/link.h >/dev/null 2>/dev/null; then
##############################################
hmmer2-2.3.2+dfsg/install-sh-85-
hmmer2-2.3.2+dfsg/install-sh:86: -t=*) transformarg=`echo $1 | sed 's/-t=//'`
hmmer2-2.3.2+dfsg/install-sh-87- shift
##############################################
hmmer2-2.3.2+dfsg/install-sh-89-
hmmer2-2.3.2+dfsg/install-sh:90: -b=*) transformbasename=`echo $1 | sed 's/-b=//'`
hmmer2-2.3.2+dfsg/install-sh-91- shift
##############################################
hmmer2-2.3.2+dfsg/install-sh-151- then
hmmer2-2.3.2+dfsg/install-sh:152: dst="$dst"/`basename $src`
hmmer2-2.3.2+dfsg/install-sh-153- else
##############################################
hmmer2-2.3.2+dfsg/install-sh-158-## this sed command emulates the dirname command
hmmer2-2.3.2+dfsg/install-sh:159:dstdir=`echo $dst | sed -e 's,[^/]*$,,;s,/$,,;s,^$,.,'`
hmmer2-2.3.2+dfsg/install-sh-160-
##############################################
hmmer2-2.3.2+dfsg/install-sh-172-IFS='%'
hmmer2-2.3.2+dfsg/install-sh:173:set - `echo ${dstdir} | sed -e 's@/@%@g' -e 's@^%@/@'`
hmmer2-2.3.2+dfsg/install-sh-174-IFS="${oIFS}"
##############################################
hmmer2-2.3.2+dfsg/install-sh-206- then
hmmer2-2.3.2+dfsg/install-sh:207: dstfile=`basename $dst`
hmmer2-2.3.2+dfsg/install-sh-208- else
##############################################
hmmer2-2.3.2+dfsg/install-sh-216- then
hmmer2-2.3.2+dfsg/install-sh:217: dstfile=`basename $dst`
hmmer2-2.3.2+dfsg/install-sh-218- else
##############################################
hmmer2-2.3.2+dfsg/config.sub-54-
hmmer2-2.3.2+dfsg/config.sub:55:me=`echo "$0" | sed -e 's,.*/,,'`
hmmer2-2.3.2+dfsg/config.sub-56-
##############################################
hmmer2-2.3.2+dfsg/config.sub-118-# Here we must recognize all the valid KERNEL-OS combinations.
hmmer2-2.3.2+dfsg/config.sub:119:maybe_os=`echo $1 | sed 's/^\(.*\)-\([^-]*-[^-]*\)$/\2/'`
hmmer2-2.3.2+dfsg/config.sub-120-case $maybe_os in
##############################################
hmmer2-2.3.2+dfsg/config.sub-122- os=-$maybe_os
hmmer2-2.3.2+dfsg/config.sub:123: basic_machine=`echo $1 | sed 's/^\(.*\)-\([^-]*-[^-]*\)$/\1/'`
hmmer2-2.3.2+dfsg/config.sub-124- ;;
hmmer2-2.3.2+dfsg/config.sub-125- *)
hmmer2-2.3.2+dfsg/config.sub:126: basic_machine=`echo $1 | sed 's/-[^-]*$//'`
hmmer2-2.3.2+dfsg/config.sub-127- if [ $basic_machine != $1 ]
hmmer2-2.3.2+dfsg/config.sub:128: then os=`echo $1 | sed 's/.*-/-/'`
hmmer2-2.3.2+dfsg/config.sub-129- else os=; fi
##############################################
hmmer2-2.3.2+dfsg/config.sub-173- os=-sco3.2v5
hmmer2-2.3.2+dfsg/config.sub:174: basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
hmmer2-2.3.2+dfsg/config.sub-175- ;;
##############################################
hmmer2-2.3.2+dfsg/config.sub-177- os=-sco3.2v4
hmmer2-2.3.2+dfsg/config.sub:178: basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
hmmer2-2.3.2+dfsg/config.sub-179- ;;
hmmer2-2.3.2+dfsg/config.sub-180- -sco3.2.[4-9]*)
hmmer2-2.3.2+dfsg/config.sub:181: os=`echo $os | sed -e 's/sco3.2./sco3.2v/'`
hmmer2-2.3.2+dfsg/config.sub:182: basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
hmmer2-2.3.2+dfsg/config.sub-183- ;;
##############################################
hmmer2-2.3.2+dfsg/config.sub-185- # Don't forget version if it is 3.2v4 or newer.
hmmer2-2.3.2+dfsg/config.sub:186: basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
hmmer2-2.3.2+dfsg/config.sub-187- ;;
##############################################
hmmer2-2.3.2+dfsg/config.sub-189- os=-sco3.2v2
hmmer2-2.3.2+dfsg/config.sub:190: basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
hmmer2-2.3.2+dfsg/config.sub-191- ;;
hmmer2-2.3.2+dfsg/config.sub-192- -udk*)
hmmer2-2.3.2+dfsg/config.sub:193: basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
hmmer2-2.3.2+dfsg/config.sub-194- ;;
##############################################
hmmer2-2.3.2+dfsg/config.sub-196- os=-isc2.2
hmmer2-2.3.2+dfsg/config.sub:197: basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
hmmer2-2.3.2+dfsg/config.sub-198- ;;
##############################################
hmmer2-2.3.2+dfsg/config.sub-202- -isc*)
hmmer2-2.3.2+dfsg/config.sub:203: basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
hmmer2-2.3.2+dfsg/config.sub-204- ;;
##############################################
hmmer2-2.3.2+dfsg/config.sub-208- -ptx*)
hmmer2-2.3.2+dfsg/config.sub:209: basic_machine=`echo $1 | sed -e 's/86-.*/86-sequent/'`
hmmer2-2.3.2+dfsg/config.sub-210- ;;
hmmer2-2.3.2+dfsg/config.sub-211- -windowsnt*)
hmmer2-2.3.2+dfsg/config.sub:212: os=`echo $os | sed -e 's/windowsnt/winnt/'`
hmmer2-2.3.2+dfsg/config.sub-213- ;;
##############################################
hmmer2-2.3.2+dfsg/config.sub-284- *-*-*)
hmmer2-2.3.2+dfsg/config.sub:285: echo Invalid configuration \`$1\': machine \`$basic_machine\' not recognized 1>&2
hmmer2-2.3.2+dfsg/config.sub-286- exit 1
##############################################
hmmer2-2.3.2+dfsg/config.sub-569- i*86v32)
hmmer2-2.3.2+dfsg/config.sub:570: basic_machine=`echo $1 | sed -e 's/86.*/86-pc/'`
hmmer2-2.3.2+dfsg/config.sub-571- os=-sysv32
##############################################
hmmer2-2.3.2+dfsg/config.sub-573- i*86v4*)
hmmer2-2.3.2+dfsg/config.sub:574: basic_machine=`echo $1 | sed -e 's/86.*/86-pc/'`
hmmer2-2.3.2+dfsg/config.sub-575- os=-sysv4
##############################################
hmmer2-2.3.2+dfsg/config.sub-577- i*86v)
hmmer2-2.3.2+dfsg/config.sub:578: basic_machine=`echo $1 | sed -e 's/86.*/86-pc/'`
hmmer2-2.3.2+dfsg/config.sub-579- os=-sysv
##############################################
hmmer2-2.3.2+dfsg/config.sub-581- i*86sol2)
hmmer2-2.3.2+dfsg/config.sub:582: basic_machine=`echo $1 | sed -e 's/86.*/86-pc/'`
hmmer2-2.3.2+dfsg/config.sub-583- os=-solaris2
##############################################
hmmer2-2.3.2+dfsg/config.sub-629- mips3*-*)
hmmer2-2.3.2+dfsg/config.sub:630: basic_machine=`echo $basic_machine | sed -e 's/mips3/mips64/'`
hmmer2-2.3.2+dfsg/config.sub-631- ;;
hmmer2-2.3.2+dfsg/config.sub-632- mips3*)
hmmer2-2.3.2+dfsg/config.sub:633: basic_machine=`echo $basic_machine | sed -e 's/mips3/mips64/'`-unknown
hmmer2-2.3.2+dfsg/config.sub-634- ;;
##############################################
hmmer2-2.3.2+dfsg/config.sub-764- pentium-* | p5-* | k5-* | k6-* | nexgen-* | viac3-*)
hmmer2-2.3.2+dfsg/config.sub:765: basic_machine=i586-`echo $basic_machine | sed 's/^[^-]*-//'`
hmmer2-2.3.2+dfsg/config.sub-766- ;;
hmmer2-2.3.2+dfsg/config.sub-767- pentiumpro-* | p6-* | 6x86-* | athlon-*)
hmmer2-2.3.2+dfsg/config.sub:768: basic_machine=i686-`echo $basic_machine | sed 's/^[^-]*-//'`
hmmer2-2.3.2+dfsg/config.sub-769- ;;
hmmer2-2.3.2+dfsg/config.sub-770- pentiumii-* | pentium2-*)
hmmer2-2.3.2+dfsg/config.sub:771: basic_machine=i686-`echo $basic_machine | sed 's/^[^-]*-//'`
hmmer2-2.3.2+dfsg/config.sub-772- ;;
##############################################
hmmer2-2.3.2+dfsg/config.sub-779- ;;
hmmer2-2.3.2+dfsg/config.sub:780: ppc-*) basic_machine=powerpc-`echo $basic_machine | sed 's/^[^-]*-//'`
hmmer2-2.3.2+dfsg/config.sub-781- ;;
##############################################
hmmer2-2.3.2+dfsg/config.sub-785- ppcle-* | powerpclittle-*)
hmmer2-2.3.2+dfsg/config.sub:786: basic_machine=powerpcle-`echo $basic_machine | sed 's/^[^-]*-//'`
hmmer2-2.3.2+dfsg/config.sub-787- ;;
##############################################
hmmer2-2.3.2+dfsg/config.sub-789- ;;
hmmer2-2.3.2+dfsg/config.sub:790: ppc64-*) basic_machine=powerpc64-`echo $basic_machine | sed 's/^[^-]*-//'`
hmmer2-2.3.2+dfsg/config.sub-791- ;;
##############################################
hmmer2-2.3.2+dfsg/config.sub-795- ppc64le-* | powerpc64little-*)
hmmer2-2.3.2+dfsg/config.sub:796: basic_machine=powerpc64le-`echo $basic_machine | sed 's/^[^-]*-//'`
hmmer2-2.3.2+dfsg/config.sub-797- ;;
##############################################
hmmer2-2.3.2+dfsg/config.sub-1053- *)
hmmer2-2.3.2+dfsg/config.sub:1054: echo Invalid configuration \`$1\': machine \`$basic_machine\' not recognized 1>&2
hmmer2-2.3.2+dfsg/config.sub-1055- exit 1
##############################################
hmmer2-2.3.2+dfsg/config.sub-1061- *-digital*)
hmmer2-2.3.2+dfsg/config.sub:1062: basic_machine=`echo $basic_machine | sed 's/digital.*/dec/'`
hmmer2-2.3.2+dfsg/config.sub-1063- ;;
hmmer2-2.3.2+dfsg/config.sub-1064- *-commodore*)
hmmer2-2.3.2+dfsg/config.sub:1065: basic_machine=`echo $basic_machine | sed 's/commodore.*/cbm/'`
hmmer2-2.3.2+dfsg/config.sub-1066- ;;
##############################################
hmmer2-2.3.2+dfsg/config.sub-1079- -solaris1 | -solaris1.*)
hmmer2-2.3.2+dfsg/config.sub:1080: os=`echo $os | sed -e 's|solaris1|sunos4|'`
hmmer2-2.3.2+dfsg/config.sub-1081- ;;
##############################################
hmmer2-2.3.2+dfsg/config.sub-1091- -gnu/linux*)
hmmer2-2.3.2+dfsg/config.sub:1092: os=`echo $os | sed -e 's|gnu/linux|linux-gnu|'`
hmmer2-2.3.2+dfsg/config.sub-1093- ;;
##############################################
hmmer2-2.3.2+dfsg/config.sub-1131- -nto*)
hmmer2-2.3.2+dfsg/config.sub:1132: os=`echo $os | sed -e 's|nto|nto-qnx|'`
hmmer2-2.3.2+dfsg/config.sub-1133- ;;
##############################################
hmmer2-2.3.2+dfsg/config.sub-1138- -mac*)
hmmer2-2.3.2+dfsg/config.sub:1139: os=`echo $os | sed -e 's|mac|macos|'`
hmmer2-2.3.2+dfsg/config.sub-1140- ;;
hmmer2-2.3.2+dfsg/config.sub-1141- -linux*)
hmmer2-2.3.2+dfsg/config.sub:1142: os=`echo $os | sed -e 's|linux|linux-gnu|'`
hmmer2-2.3.2+dfsg/config.sub-1143- ;;
hmmer2-2.3.2+dfsg/config.sub-1144- -sunos5*)
hmmer2-2.3.2+dfsg/config.sub:1145: os=`echo $os | sed -e 's|sunos5|solaris2|'`
hmmer2-2.3.2+dfsg/config.sub-1146- ;;
hmmer2-2.3.2+dfsg/config.sub-1147- -sunos6*)
hmmer2-2.3.2+dfsg/config.sub:1148: os=`echo $os | sed -e 's|sunos6|solaris3|'`
hmmer2-2.3.2+dfsg/config.sub-1149- ;;
##############################################
hmmer2-2.3.2+dfsg/config.sub-1190- -sinix5.*)
hmmer2-2.3.2+dfsg/config.sub:1191: os=`echo $os | sed -e 's|sinix|sysv|'`
hmmer2-2.3.2+dfsg/config.sub-1192- ;;
##############################################
hmmer2-2.3.2+dfsg/config.sub-1229- # Get rid of the `-' at the beginning of $os.
hmmer2-2.3.2+dfsg/config.sub:1230: os=`echo $os | sed 's/[^-]*-//'`
hmmer2-2.3.2+dfsg/config.sub:1231: echo Invalid configuration \`$1\': system \`$os\' not recognized 1>&2
hmmer2-2.3.2+dfsg/config.sub-1232- exit 1
##############################################
hmmer2-2.3.2+dfsg/config.sub-1456- esac
hmmer2-2.3.2+dfsg/config.sub:1457: basic_machine=`echo $basic_machine | sed "s/unknown/$vendor/"`
hmmer2-2.3.2+dfsg/config.sub-1458- ;;
##############################################
hmmer2-2.3.2+dfsg/testsuite/sqc-334-
hmmer2-2.3.2+dfsg/testsuite/sqc:335: system("diff $tmp.REGRESSION.1 $tmp.REGRESSION.2 > /dev/null");
hmmer2-2.3.2+dfsg/testsuite/sqc-336- if ($? != 0) {
##############################################
hmmer2-2.3.2+dfsg/testsuite/test1-conversion.pl-16-if ($ok) {
hmmer2-2.3.2+dfsg/testsuite/test1-conversion.pl:17: system("$hmmconvert -F fn3-bin test1.tmp1 > /dev/null 2> /dev/null");
hmmer2-2.3.2+dfsg/testsuite/test1-conversion.pl-18- if ($? != 0) { $ok = 0; }
##############################################
hmmer2-2.3.2+dfsg/testsuite/test1-conversion.pl-20-if ($ok) {
hmmer2-2.3.2+dfsg/testsuite/test1-conversion.pl:21: system("$hmmconvert -F fn3-bin-swap test1.tmp2 > /dev/null 2> /dev/null");
hmmer2-2.3.2+dfsg/testsuite/test1-conversion.pl-22- if ($? != 0) { $ok = 0; }
##############################################
hmmer2-2.3.2+dfsg/debian/patches/add-runstatedir-option.patch-45- do
hmmer2-2.3.2+dfsg/debian/patches/add-runstatedir-option.patch:46: eval ac_val=$`echo $ac_var`
hmmer2-2.3.2+dfsg/debian/patches/add-runstatedir-option.patch-47- case $ac_val in
##############################################
hmmer2-2.3.2+dfsg/debian/tests/run-unit-test-6-if [ "$AUTOPKGTEST_TMP" = "" ] ; then
hmmer2-2.3.2+dfsg/debian/tests/run-unit-test:7: AUTOPKGTEST_TMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
hmmer2-2.3.2+dfsg/debian/tests/run-unit-test-8-fi
##############################################
hmmer2-2.3.2+dfsg/debian/tests/run-unit-test-14-find . -name "*.gz" -exec gunzip \{\} \;
hmmer2-2.3.2+dfsg/debian/tests/run-unit-test:15:sed -i 's|$(CC) $(CFLAGS) $(PTHREAD_CFLAGS) ${CPPFLAGS} $(DEFS) `pkg-config --cflags libsquid` -I../src -c $<|$(CC) $(CFLAGS) $(PTHREAD_CFLAGS) ${CPPFLAGS} $(DEFS) `pkg-config --cflags libsquid` -I../src -I/usr/include/hmmer2 -c $<|' Makefile
hmmer2-2.3.2+dfsg/debian/tests/run-unit-test-16-make
##############################################
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-45-do
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:46: if (set +x; test -n "`(eval $as_var=C; export $as_var) 2>&1`"); then
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-47- eval $as_var=C; export $as_var
##############################################
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-103- as_lineno_2=$LINENO
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:104: as_lineno_3=`(expr $as_lineno_1 + 1) 2>/dev/null`
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-105- test "x$as_lineno_1" != "x$as_lineno_2" &&
##############################################
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-142- as_lineno_2=$LINENO
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:143: as_lineno_3=`(expr $as_lineno_1 + 1) 2>/dev/null`
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-144- test "x$as_lineno_1" != "x$as_lineno_2" &&
##############################################
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-326-
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:327: ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-328-
##############################################
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-359- -disable-* | --disable-*)
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:360: ac_feature=`expr "x$ac_option" : 'x-*disable-\(.*\)'`
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-361- # Reject names that are not valid shell variable names.
##############################################
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-364- { (exit 1); exit 1; }; }
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:365: ac_feature=`echo $ac_feature | sed 's/-/_/g'`
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-366- eval "enable_$ac_feature=no" ;;
##############################################
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-368- -enable-* | --enable-*)
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:369: ac_feature=`expr "x$ac_option" : 'x-*enable-\([^=]*\)'`
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-370- # Reject names that are not valid shell variable names.
##############################################
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-373- { (exit 1); exit 1; }; }
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:374: ac_feature=`echo $ac_feature | sed 's/-/_/g'`
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-375- case $ac_option in
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:376: *=*) ac_optarg=`echo "$ac_optarg" | sed "s/'/'\\\\\\\\''/g"`;;
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-377- *) ac_optarg=yes ;;
##############################################
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-550- -with-* | --with-*)
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:551: ac_package=`expr "x$ac_option" : 'x-*with-\([^=]*\)'`
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-552- # Reject names that are not valid shell variable names.
##############################################
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-555- { (exit 1); exit 1; }; }
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:556: ac_package=`echo $ac_package| sed 's/-/_/g'`
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-557- case $ac_option in
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:558: *=*) ac_optarg=`echo "$ac_optarg" | sed "s/'/'\\\\\\\\''/g"`;;
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-559- *) ac_optarg=yes ;;
##############################################
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-563- -without-* | --without-*)
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:564: ac_package=`expr "x$ac_option" : 'x-*without-\(.*\)'`
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-565- # Reject names that are not valid shell variable names.
##############################################
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-568- { (exit 1); exit 1; }; }
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:569: ac_package=`echo $ac_package | sed 's/-/_/g'`
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-570- eval "with_$ac_package=no" ;;
##############################################
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-595- *=*)
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:596: ac_envvar=`expr "x$ac_option" : 'x\([^=]*\)='`
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-597- # Reject names that are not valid shell variable names.
##############################################
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-600- { (exit 1); exit 1; }; }
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:601: ac_optarg=`echo "$ac_optarg" | sed "s/'/'\\\\\\\\''/g"`
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-602- eval "$ac_envvar='$ac_optarg'"
##############################################
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-616-if test -n "$ac_prev"; then
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:617: ac_option=--`echo $ac_prev | sed 's/_/-/g'`
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-618- { echo "$as_me: error: missing argument to $ac_option" >&2
##############################################
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-624-do
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:625: eval ac_val=$`echo $ac_var`
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-626- case $ac_val in
##############################################
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-636-do
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:637: eval ac_val=$`echo $ac_var`
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-638- case $ac_val in
##############################################
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-703- { (exit 1); exit 1; }; }
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:704:srcdir=`echo "$srcdir" | sed 's%\([^\\/]\)[\\/]*$%\1%'`
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-705-ac_env_build_alias_set=${build_alias+set}
##############################################
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-770-By default, \`make install' will install all the files in
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:771:\`$ac_default_prefix/bin', \`$ac_default_prefix/lib' etc. You can specify
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:772:an installation prefix other than \`$ac_default_prefix' using \`--prefix',
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-773-for instance \`--prefix=\$HOME'.
##############################################
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-840-if test "$ac_dir" != .; then
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:841: ac_dir_suffix=/`echo "$ac_dir" | sed 's,^\.[\\/],,'`
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-842- # A "../" for each directory in $ac_dir_suffix.
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:843: ac_top_builddir=`echo "$ac_dir_suffix" | sed 's,/[^\\/]*,../,g'`
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-844-else
##############################################
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-853- else
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:854: ac_top_srcdir=`echo $ac_top_builddir | sed 's,/$,,'`
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-855- fi ;;
##############################################
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-862-esac
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:863:# Don't blindly perform a `cd "$ac_dir"/$ac_foo && pwd` since $ac_foo can be
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-864-# absolute.
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:865:ac_abs_builddir=`cd "$ac_dir" && cd $ac_builddir && pwd`
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:866:ac_abs_top_builddir=`cd "$ac_dir" && cd ${ac_top_builddir}. && pwd`
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:867:ac_abs_srcdir=`cd "$ac_dir" && cd $ac_srcdir && pwd`
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:868:ac_abs_top_srcdir=`cd "$ac_dir" && cd $ac_top_srcdir && pwd`
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-869-
##############################################
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-977- *" "*|*" "*|*[\[\]\~\#\$\^\&\*\(\)\{\}\\\|\;\<\>\?\"\']*)
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:978: ac_arg=`echo "$ac_arg" | sed "s/'/'\\\\\\\\''/g"` ;;
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-979- esac
##############################################
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-1049- do
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:1050: eval ac_val=$`echo $ac_var`
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-1051- echo "$ac_var='"'"'$ac_val'"'"'"
##############################################
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-1063- do
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:1064: eval ac_val=$`echo $ac_var`
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-1065- echo "$ac_var='"'"'$ac_val'"'"'"
##############################################
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-1170- set,)
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:1171: { echo "$as_me:$LINENO: error: \`$ac_var' was set to \`$ac_old_val' in the previous run" >&5
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:1172:echo "$as_me: error: \`$ac_var' was set to \`$ac_old_val' in the previous run" >&2;}
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-1173- ac_cache_corrupted=: ;;
##############################################
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-1193- *" "*|*" "*|*[\[\]\~\#\$\^\&\*\(\)\{\}\\\|\;\<\>\?\"\']*)
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:1194: ac_arg=$ac_var=`echo "$ac_new_val" | sed "s/'/'\\\\\\\\''/g"` ;;
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-1195- *) ac_arg=$ac_var=$ac_new_val ;;
##############################################
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-1614- "checking for C compiler version" >&5
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:1615:ac_compiler=`set X $ac_compile; echo $2`
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-1616-{ (eval echo "$as_me:$LINENO: \"$ac_compiler --version </dev/null >&5\"") >&5
##############################################
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-1654-echo $ECHO_N "checking for C compiler default output... $ECHO_C" >&6
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:1655:ac_link_default=`echo "$ac_link" | sed 's/ -o *conftest[^ ]*//'`
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-1656-if { (eval echo "$as_me:$LINENO: \"$ac_link_default\"") >&5
##############################################
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-1682- *.* )
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:1683: ac_cv_exeext=`expr "$ac_file" : '[^.]*\(\..*\)'`
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-1684- # FIXME: I believe we export ac_cv_exeext for Libtool,
##############################################
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-1762- *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.o | *.obj ) ;;
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:1763: *.* ) ac_cv_exeext=`expr "$ac_file" : '[^.]*\(\..*\)'`
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-1764- export ac_cv_exeext
##############################################
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-1813- *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg ) ;;
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:1814: *) ac_cv_objext=`expr "$ac_file" : '.*\.\(.*\)'`
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-1815- break;;
##############################################
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-1883-echo "${ECHO_T}$ac_cv_c_compiler_gnu" >&6
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:1884:GCC=`test $ac_compiler_gnu = yes && echo yes`
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-1885-ac_test_CFLAGS=${CFLAGS+set}
##############################################
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-2337-test -z "$ac_cv_build_alias" &&
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:2338: ac_cv_build_alias=`$ac_config_guess`
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-2339-test -z "$ac_cv_build_alias" &&
##############################################
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-2342- { (exit 1); exit 1; }; }
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:2343:ac_cv_build=`$ac_config_sub $ac_cv_build_alias` ||
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-2344- { { echo "$as_me:$LINENO: error: $ac_config_sub $ac_cv_build_alias failed" >&5
##############################################
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-2351-build=$ac_cv_build
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:2352:build_cpu=`echo $ac_cv_build | sed 's/^\([^-]*\)-\([^-]*\)-\(.*\)$/\1/'`
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:2353:build_vendor=`echo $ac_cv_build | sed 's/^\([^-]*\)-\([^-]*\)-\(.*\)$/\2/'`
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:2354:build_os=`echo $ac_cv_build | sed 's/^\([^-]*\)-\([^-]*\)-\(.*\)$/\3/'`
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-2355-
##############################################
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-2364- ac_cv_host_alias=$ac_cv_build_alias
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:2365:ac_cv_host=`$ac_config_sub $ac_cv_host_alias` ||
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-2366- { { echo "$as_me:$LINENO: error: $ac_config_sub $ac_cv_host_alias failed" >&5
##############################################
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-2373-host=$ac_cv_host
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:2374:host_cpu=`echo $ac_cv_host | sed 's/^\([^-]*\)-\([^-]*\)-\(.*\)$/\1/'`
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:2375:host_vendor=`echo $ac_cv_host | sed 's/^\([^-]*\)-\([^-]*\)-\(.*\)$/\2/'`
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:2376:host_os=`echo $ac_cv_host | sed 's/^\([^-]*\)-\([^-]*\)-\(.*\)$/\3/'`
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-2377-
##############################################
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-2685-do
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:2686:as_ac_var=`echo "ac_cv_func_$ac_func" | $as_tr_sh`
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-2687-echo "$as_me:$LINENO: checking for $ac_func" >&5
##############################################
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-2756-fi
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:2757:echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_var'}'`" >&5
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:2758:echo "${ECHO_T}`eval echo '${'$as_ac_var'}'`" >&6
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:2759:if test `eval echo '${'$as_ac_var'}'` = yes; then
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-2760- cat >>confdefs.h <<_ACEOF
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:2761:#define `echo "HAVE_$ac_func" | $as_tr_cpp` 1
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-2762-_ACEOF
##############################################
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-2769-do
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:2770:as_ac_var=`echo "ac_cv_func_$ac_func" | $as_tr_sh`
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-2771-echo "$as_me:$LINENO: checking for $ac_func" >&5
##############################################
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-2840-fi
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:2841:echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_var'}'`" >&5
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:2842:echo "${ECHO_T}`eval echo '${'$as_ac_var'}'`" >&6
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:2843:if test `eval echo '${'$as_ac_var'}'` = yes; then
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-2844- cat >>confdefs.h <<_ACEOF
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:2845:#define `echo "HAVE_$ac_func" | $as_tr_cpp` 1
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-2846-_ACEOF
##############################################
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-3269-do
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:3270:as_ac_var=`echo "ac_cv_func_$ac_func" | $as_tr_sh`
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-3271-echo "$as_me:$LINENO: checking for $ac_func" >&5
##############################################
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-3340-fi
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:3341:echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_var'}'`" >&5
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:3342:echo "${ECHO_T}`eval echo '${'$as_ac_var'}'`" >&6
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:3343:if test `eval echo '${'$as_ac_var'}'` = yes; then
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-3344- cat >>confdefs.h <<_ACEOF
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:3345:#define `echo "HAVE_$ac_func" | $as_tr_cpp` 1
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-3346-_ACEOF
##############################################
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-3418-do
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:3419:as_ac_var=`echo "ac_cv_func_$ac_func" | $as_tr_sh`
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-3420-echo "$as_me:$LINENO: checking for $ac_func" >&5
##############################################
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-3489-fi
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:3490:echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_var'}'`" >&5
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:3491:echo "${ECHO_T}`eval echo '${'$as_ac_var'}'`" >&6
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:3492:if test `eval echo '${'$as_ac_var'}'` = yes; then
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-3493- cat >>confdefs.h <<_ACEOF
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:3494:#define `echo "HAVE_$ac_func" | $as_tr_cpp` 1
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-3495-_ACEOF
##############################################
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-3567-do
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:3568:as_ac_var=`echo "ac_cv_func_$ac_func" | $as_tr_sh`
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-3569-echo "$as_me:$LINENO: checking for $ac_func" >&5
##############################################
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-3638-fi
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:3639:echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_var'}'`" >&5
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:3640:echo "${ECHO_T}`eval echo '${'$as_ac_var'}'`" >&6
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:3641:if test `eval echo '${'$as_ac_var'}'` = yes; then
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-3642- cat >>confdefs.h <<_ACEOF
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:3643:#define `echo "HAVE_$ac_func" | $as_tr_cpp` 1
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-3644-_ACEOF
##############################################
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-3716-do
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:3717:as_ac_var=`echo "ac_cv_func_$ac_func" | $as_tr_sh`
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-3718-echo "$as_me:$LINENO: checking for $ac_func" >&5
##############################################
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-3787-fi
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:3788:echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_var'}'`" >&5
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:3789:echo "${ECHO_T}`eval echo '${'$as_ac_var'}'`" >&6
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:3790:if test `eval echo '${'$as_ac_var'}'` = yes; then
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-3791- cat >>confdefs.h <<_ACEOF
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:3792:#define `echo "HAVE_$ac_func" | $as_tr_cpp` 1
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-3793-_ACEOF
##############################################
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-4037-do
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:4038: if (set +x; test -n "`(eval $as_var=C; export $as_var) 2>&1`"); then
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-4039- eval $as_var=C; export $as_var
##############################################
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-4095- as_lineno_2=$LINENO
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:4096: as_lineno_3=`(expr $as_lineno_1 + 1) 2>/dev/null`
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-4097- test "x$as_lineno_1" != "x$as_lineno_2" &&
##############################################
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-4135- as_lineno_2=$LINENO
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:4136: as_lineno_3=`(expr $as_lineno_1 + 1) 2>/dev/null`
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-4137- test "x$as_lineno_1" != "x$as_lineno_2" &&
##############################################
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-4313-configured by $0, generated by GNU Autoconf 2.57,
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:4314: with options \\"`echo "$ac_configure_args" | sed 's/[\\""\`\$]/\\\\&/g'`\\"
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-4315-
##############################################
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-4330- --*=*)
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:4331: ac_option=`expr "x$1" : 'x\([^=]*\)='`
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:4332: ac_optarg=`expr "x$1" : 'x[^=]*=\(.*\)'`
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-4333- ac_shift=:
##############################################
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-4569- fi
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:4570: ac_sed_frag=`expr $ac_sed_frag + 1`
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-4571- ac_beg=$ac_end
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:4572: ac_end=`expr $ac_end + $ac_max_sed_lines`
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-4573- fi
##############################################
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-4586- cat >$tmp/stdin
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:4587: ac_file_in=`echo "$ac_file" | sed 's,[^:]*:,,'`
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:4588: ac_file=`echo "$ac_file" | sed 's,:.*,,'` ;;
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:4589: *:* ) ac_file_in=`echo "$ac_file" | sed 's,[^:]*:,,'`
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:4590: ac_file=`echo "$ac_file" | sed 's,:.*,,'` ;;
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-4591- * ) ac_file_in=$ac_file.in ;;
##############################################
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-4634-if test "$ac_dir" != .; then
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:4635: ac_dir_suffix=/`echo "$ac_dir" | sed 's,^\.[\\/],,'`
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-4636- # A "../" for each directory in $ac_dir_suffix.
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:4637: ac_top_builddir=`echo "$ac_dir_suffix" | sed 's,/[^\\/]*,../,g'`
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-4638-else
##############################################
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-4647- else
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:4648: ac_top_srcdir=`echo $ac_top_builddir | sed 's,/$,,'`
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-4649- fi ;;
##############################################
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-4656-esac
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:4657:# Don't blindly perform a `cd "$ac_dir"/$ac_foo && pwd` since $ac_foo can be
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-4658-# absolute.
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:4659:ac_abs_builddir=`cd "$ac_dir" && cd $ac_builddir && pwd`
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:4660:ac_abs_top_builddir=`cd "$ac_dir" && cd ${ac_top_builddir}. && pwd`
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:4661:ac_abs_srcdir=`cd "$ac_dir" && cd $ac_srcdir && pwd`
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:4662:ac_abs_top_srcdir=`cd "$ac_dir" && cd $ac_top_srcdir && pwd`
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-4663-
##############################################
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-4761- cat >$tmp/stdin
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:4762: ac_file_in=`echo "$ac_file" | sed 's,[^:]*:,,'`
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:4763: ac_file=`echo "$ac_file" | sed 's,:.*,,'` ;;
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:4764: *:* ) ac_file_in=`echo "$ac_file" | sed 's,[^:]*:,,'`
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:4765: ac_file=`echo "$ac_file" | sed 's,:.*,,'` ;;
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-4766- * ) ac_file_in=$ac_file.in ;;
##############################################
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-5064-if test "$ac_dir" != .; then
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:5065: ac_dir_suffix=/`echo "$ac_dir" | sed 's,^\.[\\/],,'`
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-5066- # A "../" for each directory in $ac_dir_suffix.
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:5067: ac_top_builddir=`echo "$ac_dir_suffix" | sed 's,/[^\\/]*,../,g'`
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-5068-else
##############################################
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-5077- else
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:5078: ac_top_srcdir=`echo $ac_top_builddir | sed 's,/$,,'`
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-5079- fi ;;
##############################################
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-5086-esac
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:5087:# Don't blindly perform a `cd "$ac_dir"/$ac_foo && pwd` since $ac_foo can be
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-5088-# absolute.
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:5089:ac_abs_builddir=`cd "$ac_dir" && cd $ac_builddir && pwd`
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:5090:ac_abs_top_builddir=`cd "$ac_dir" && cd ${ac_top_builddir}. && pwd`
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:5091:ac_abs_srcdir=`cd "$ac_dir" && cd $ac_srcdir && pwd`
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure:5092:ac_abs_top_srcdir=`cd "$ac_dir" && cd $ac_top_srcdir && pwd`
hmmer2-2.3.2+dfsg/.pc/use_debian_packaged_biosquid.patch/configure-5093-
##############################################
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-45-do
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:46: if (set +x; test -n "`(eval $as_var=C; export $as_var) 2>&1`"); then
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-47- eval $as_var=C; export $as_var
##############################################
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-103- as_lineno_2=$LINENO
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:104: as_lineno_3=`(expr $as_lineno_1 + 1) 2>/dev/null`
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-105- test "x$as_lineno_1" != "x$as_lineno_2" &&
##############################################
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-142- as_lineno_2=$LINENO
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:143: as_lineno_3=`(expr $as_lineno_1 + 1) 2>/dev/null`
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-144- test "x$as_lineno_1" != "x$as_lineno_2" &&
##############################################
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-326-
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:327: ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-328-
##############################################
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-359- -disable-* | --disable-*)
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:360: ac_feature=`expr "x$ac_option" : 'x-*disable-\(.*\)'`
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-361- # Reject names that are not valid shell variable names.
##############################################
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-364- { (exit 1); exit 1; }; }
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:365: ac_feature=`echo $ac_feature | sed 's/-/_/g'`
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-366- eval "enable_$ac_feature=no" ;;
##############################################
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-368- -enable-* | --enable-*)
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:369: ac_feature=`expr "x$ac_option" : 'x-*enable-\([^=]*\)'`
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-370- # Reject names that are not valid shell variable names.
##############################################
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-373- { (exit 1); exit 1; }; }
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:374: ac_feature=`echo $ac_feature | sed 's/-/_/g'`
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-375- case $ac_option in
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:376: *=*) ac_optarg=`echo "$ac_optarg" | sed "s/'/'\\\\\\\\''/g"`;;
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-377- *) ac_optarg=yes ;;
##############################################
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-550- -with-* | --with-*)
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:551: ac_package=`expr "x$ac_option" : 'x-*with-\([^=]*\)'`
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-552- # Reject names that are not valid shell variable names.
##############################################
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-555- { (exit 1); exit 1; }; }
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:556: ac_package=`echo $ac_package| sed 's/-/_/g'`
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-557- case $ac_option in
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:558: *=*) ac_optarg=`echo "$ac_optarg" | sed "s/'/'\\\\\\\\''/g"`;;
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-559- *) ac_optarg=yes ;;
##############################################
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-563- -without-* | --without-*)
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:564: ac_package=`expr "x$ac_option" : 'x-*without-\(.*\)'`
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-565- # Reject names that are not valid shell variable names.
##############################################
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-568- { (exit 1); exit 1; }; }
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:569: ac_package=`echo $ac_package | sed 's/-/_/g'`
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-570- eval "with_$ac_package=no" ;;
##############################################
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-595- *=*)
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:596: ac_envvar=`expr "x$ac_option" : 'x\([^=]*\)='`
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-597- # Reject names that are not valid shell variable names.
##############################################
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-600- { (exit 1); exit 1; }; }
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:601: ac_optarg=`echo "$ac_optarg" | sed "s/'/'\\\\\\\\''/g"`
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-602- eval "$ac_envvar='$ac_optarg'"
##############################################
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-616-if test -n "$ac_prev"; then
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:617: ac_option=--`echo $ac_prev | sed 's/_/-/g'`
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-618- { echo "$as_me: error: missing argument to $ac_option" >&2
##############################################
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-624-do
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:625: eval ac_val=$`echo $ac_var`
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-626- case $ac_val in
##############################################
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-636-do
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:637: eval ac_val=$`echo $ac_var`
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-638- case $ac_val in
##############################################
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-703- { (exit 1); exit 1; }; }
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:704:srcdir=`echo "$srcdir" | sed 's%\([^\\/]\)[\\/]*$%\1%'`
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-705-ac_env_build_alias_set=${build_alias+set}
##############################################
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-770-By default, \`make install' will install all the files in
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:771:\`$ac_default_prefix/bin', \`$ac_default_prefix/lib' etc. You can specify
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:772:an installation prefix other than \`$ac_default_prefix' using \`--prefix',
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-773-for instance \`--prefix=\$HOME'.
##############################################
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-840-if test "$ac_dir" != .; then
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:841: ac_dir_suffix=/`echo "$ac_dir" | sed 's,^\.[\\/],,'`
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-842- # A "../" for each directory in $ac_dir_suffix.
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:843: ac_top_builddir=`echo "$ac_dir_suffix" | sed 's,/[^\\/]*,../,g'`
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-844-else
##############################################
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-853- else
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:854: ac_top_srcdir=`echo $ac_top_builddir | sed 's,/$,,'`
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-855- fi ;;
##############################################
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-862-esac
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:863:# Don't blindly perform a `cd "$ac_dir"/$ac_foo && pwd` since $ac_foo can be
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-864-# absolute.
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:865:ac_abs_builddir=`cd "$ac_dir" && cd $ac_builddir && pwd`
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:866:ac_abs_top_builddir=`cd "$ac_dir" && cd ${ac_top_builddir}. && pwd`
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:867:ac_abs_srcdir=`cd "$ac_dir" && cd $ac_srcdir && pwd`
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:868:ac_abs_top_srcdir=`cd "$ac_dir" && cd $ac_top_srcdir && pwd`
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-869-
##############################################
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-977- *" "*|*" "*|*[\[\]\~\#\$\^\&\*\(\)\{\}\\\|\;\<\>\?\"\']*)
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:978: ac_arg=`echo "$ac_arg" | sed "s/'/'\\\\\\\\''/g"` ;;
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-979- esac
##############################################
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-1049- do
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:1050: eval ac_val=$`echo $ac_var`
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-1051- echo "$ac_var='"'"'$ac_val'"'"'"
##############################################
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-1063- do
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:1064: eval ac_val=$`echo $ac_var`
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-1065- echo "$ac_var='"'"'$ac_val'"'"'"
##############################################
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-1170- set,)
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:1171: { echo "$as_me:$LINENO: error: \`$ac_var' was set to \`$ac_old_val' in the previous run" >&5
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:1172:echo "$as_me: error: \`$ac_var' was set to \`$ac_old_val' in the previous run" >&2;}
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-1173- ac_cache_corrupted=: ;;
##############################################
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-1193- *" "*|*" "*|*[\[\]\~\#\$\^\&\*\(\)\{\}\\\|\;\<\>\?\"\']*)
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:1194: ac_arg=$ac_var=`echo "$ac_new_val" | sed "s/'/'\\\\\\\\''/g"` ;;
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-1195- *) ac_arg=$ac_var=$ac_new_val ;;
##############################################
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-1614- "checking for C compiler version" >&5
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:1615:ac_compiler=`set X $ac_compile; echo $2`
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-1616-{ (eval echo "$as_me:$LINENO: \"$ac_compiler --version </dev/null >&5\"") >&5
##############################################
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-1654-echo $ECHO_N "checking for C compiler default output... $ECHO_C" >&6
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:1655:ac_link_default=`echo "$ac_link" | sed 's/ -o *conftest[^ ]*//'`
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-1656-if { (eval echo "$as_me:$LINENO: \"$ac_link_default\"") >&5
##############################################
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-1682- *.* )
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:1683: ac_cv_exeext=`expr "$ac_file" : '[^.]*\(\..*\)'`
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-1684- # FIXME: I believe we export ac_cv_exeext for Libtool,
##############################################
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-1762- *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.o | *.obj ) ;;
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:1763: *.* ) ac_cv_exeext=`expr "$ac_file" : '[^.]*\(\..*\)'`
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-1764- export ac_cv_exeext
##############################################
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-1813- *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg ) ;;
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:1814: *) ac_cv_objext=`expr "$ac_file" : '.*\.\(.*\)'`
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-1815- break;;
##############################################
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-1883-echo "${ECHO_T}$ac_cv_c_compiler_gnu" >&6
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:1884:GCC=`test $ac_compiler_gnu = yes && echo yes`
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-1885-ac_test_CFLAGS=${CFLAGS+set}
##############################################
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-2337-test -z "$ac_cv_build_alias" &&
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:2338: ac_cv_build_alias=`$ac_config_guess`
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-2339-test -z "$ac_cv_build_alias" &&
##############################################
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-2342- { (exit 1); exit 1; }; }
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:2343:ac_cv_build=`$ac_config_sub $ac_cv_build_alias` ||
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-2344- { { echo "$as_me:$LINENO: error: $ac_config_sub $ac_cv_build_alias failed" >&5
##############################################
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-2351-build=$ac_cv_build
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:2352:build_cpu=`echo $ac_cv_build | sed 's/^\([^-]*\)-\([^-]*\)-\(.*\)$/\1/'`
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:2353:build_vendor=`echo $ac_cv_build | sed 's/^\([^-]*\)-\([^-]*\)-\(.*\)$/\2/'`
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:2354:build_os=`echo $ac_cv_build | sed 's/^\([^-]*\)-\([^-]*\)-\(.*\)$/\3/'`
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-2355-
##############################################
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-2364- ac_cv_host_alias=$ac_cv_build_alias
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:2365:ac_cv_host=`$ac_config_sub $ac_cv_host_alias` ||
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-2366- { { echo "$as_me:$LINENO: error: $ac_config_sub $ac_cv_host_alias failed" >&5
##############################################
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-2373-host=$ac_cv_host
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:2374:host_cpu=`echo $ac_cv_host | sed 's/^\([^-]*\)-\([^-]*\)-\(.*\)$/\1/'`
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:2375:host_vendor=`echo $ac_cv_host | sed 's/^\([^-]*\)-\([^-]*\)-\(.*\)$/\2/'`
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:2376:host_os=`echo $ac_cv_host | sed 's/^\([^-]*\)-\([^-]*\)-\(.*\)$/\3/'`
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-2377-
##############################################
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-2685-do
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:2686:as_ac_var=`echo "ac_cv_func_$ac_func" | $as_tr_sh`
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-2687-echo "$as_me:$LINENO: checking for $ac_func" >&5
##############################################
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-2756-fi
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:2757:echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_var'}'`" >&5
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:2758:echo "${ECHO_T}`eval echo '${'$as_ac_var'}'`" >&6
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:2759:if test `eval echo '${'$as_ac_var'}'` = yes; then
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-2760- cat >>confdefs.h <<_ACEOF
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:2761:#define `echo "HAVE_$ac_func" | $as_tr_cpp` 1
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-2762-_ACEOF
##############################################
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-2769-do
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:2770:as_ac_var=`echo "ac_cv_func_$ac_func" | $as_tr_sh`
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-2771-echo "$as_me:$LINENO: checking for $ac_func" >&5
##############################################
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-2840-fi
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:2841:echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_var'}'`" >&5
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:2842:echo "${ECHO_T}`eval echo '${'$as_ac_var'}'`" >&6
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:2843:if test `eval echo '${'$as_ac_var'}'` = yes; then
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-2844- cat >>confdefs.h <<_ACEOF
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:2845:#define `echo "HAVE_$ac_func" | $as_tr_cpp` 1
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-2846-_ACEOF
##############################################
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-3269-do
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:3270:as_ac_var=`echo "ac_cv_func_$ac_func" | $as_tr_sh`
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-3271-echo "$as_me:$LINENO: checking for $ac_func" >&5
##############################################
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-3340-fi
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:3341:echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_var'}'`" >&5
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:3342:echo "${ECHO_T}`eval echo '${'$as_ac_var'}'`" >&6
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:3343:if test `eval echo '${'$as_ac_var'}'` = yes; then
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-3344- cat >>confdefs.h <<_ACEOF
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:3345:#define `echo "HAVE_$ac_func" | $as_tr_cpp` 1
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-3346-_ACEOF
##############################################
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-3418-do
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:3419:as_ac_var=`echo "ac_cv_func_$ac_func" | $as_tr_sh`
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-3420-echo "$as_me:$LINENO: checking for $ac_func" >&5
##############################################
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-3489-fi
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:3490:echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_var'}'`" >&5
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:3491:echo "${ECHO_T}`eval echo '${'$as_ac_var'}'`" >&6
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:3492:if test `eval echo '${'$as_ac_var'}'` = yes; then
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-3493- cat >>confdefs.h <<_ACEOF
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:3494:#define `echo "HAVE_$ac_func" | $as_tr_cpp` 1
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-3495-_ACEOF
##############################################
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-3567-do
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:3568:as_ac_var=`echo "ac_cv_func_$ac_func" | $as_tr_sh`
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-3569-echo "$as_me:$LINENO: checking for $ac_func" >&5
##############################################
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-3638-fi
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:3639:echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_var'}'`" >&5
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:3640:echo "${ECHO_T}`eval echo '${'$as_ac_var'}'`" >&6
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:3641:if test `eval echo '${'$as_ac_var'}'` = yes; then
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-3642- cat >>confdefs.h <<_ACEOF
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:3643:#define `echo "HAVE_$ac_func" | $as_tr_cpp` 1
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-3644-_ACEOF
##############################################
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-3716-do
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:3717:as_ac_var=`echo "ac_cv_func_$ac_func" | $as_tr_sh`
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-3718-echo "$as_me:$LINENO: checking for $ac_func" >&5
##############################################
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-3787-fi
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:3788:echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_var'}'`" >&5
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:3789:echo "${ECHO_T}`eval echo '${'$as_ac_var'}'`" >&6
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:3790:if test `eval echo '${'$as_ac_var'}'` = yes; then
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-3791- cat >>confdefs.h <<_ACEOF
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:3792:#define `echo "HAVE_$ac_func" | $as_tr_cpp` 1
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-3793-_ACEOF
##############################################
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-4037-do
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:4038: if (set +x; test -n "`(eval $as_var=C; export $as_var) 2>&1`"); then
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-4039- eval $as_var=C; export $as_var
##############################################
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-4095- as_lineno_2=$LINENO
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:4096: as_lineno_3=`(expr $as_lineno_1 + 1) 2>/dev/null`
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-4097- test "x$as_lineno_1" != "x$as_lineno_2" &&
##############################################
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-4135- as_lineno_2=$LINENO
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:4136: as_lineno_3=`(expr $as_lineno_1 + 1) 2>/dev/null`
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-4137- test "x$as_lineno_1" != "x$as_lineno_2" &&
##############################################
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-4313-configured by $0, generated by GNU Autoconf 2.57,
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:4314: with options \\"`echo "$ac_configure_args" | sed 's/[\\""\`\$]/\\\\&/g'`\\"
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-4315-
##############################################
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-4330- --*=*)
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:4331: ac_option=`expr "x$1" : 'x\([^=]*\)='`
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:4332: ac_optarg=`expr "x$1" : 'x[^=]*=\(.*\)'`
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-4333- ac_shift=:
##############################################
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-4569- fi
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:4570: ac_sed_frag=`expr $ac_sed_frag + 1`
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-4571- ac_beg=$ac_end
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:4572: ac_end=`expr $ac_end + $ac_max_sed_lines`
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-4573- fi
##############################################
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-4586- cat >$tmp/stdin
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:4587: ac_file_in=`echo "$ac_file" | sed 's,[^:]*:,,'`
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:4588: ac_file=`echo "$ac_file" | sed 's,:.*,,'` ;;
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:4589: *:* ) ac_file_in=`echo "$ac_file" | sed 's,[^:]*:,,'`
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:4590: ac_file=`echo "$ac_file" | sed 's,:.*,,'` ;;
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-4591- * ) ac_file_in=$ac_file.in ;;
##############################################
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-4634-if test "$ac_dir" != .; then
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:4635: ac_dir_suffix=/`echo "$ac_dir" | sed 's,^\.[\\/],,'`
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-4636- # A "../" for each directory in $ac_dir_suffix.
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:4637: ac_top_builddir=`echo "$ac_dir_suffix" | sed 's,/[^\\/]*,../,g'`
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-4638-else
##############################################
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-4647- else
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:4648: ac_top_srcdir=`echo $ac_top_builddir | sed 's,/$,,'`
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-4649- fi ;;
##############################################
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-4656-esac
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:4657:# Don't blindly perform a `cd "$ac_dir"/$ac_foo && pwd` since $ac_foo can be
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-4658-# absolute.
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:4659:ac_abs_builddir=`cd "$ac_dir" && cd $ac_builddir && pwd`
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:4660:ac_abs_top_builddir=`cd "$ac_dir" && cd ${ac_top_builddir}. && pwd`
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:4661:ac_abs_srcdir=`cd "$ac_dir" && cd $ac_srcdir && pwd`
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:4662:ac_abs_top_srcdir=`cd "$ac_dir" && cd $ac_top_srcdir && pwd`
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-4663-
##############################################
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-4761- cat >$tmp/stdin
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:4762: ac_file_in=`echo "$ac_file" | sed 's,[^:]*:,,'`
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:4763: ac_file=`echo "$ac_file" | sed 's,:.*,,'` ;;
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:4764: *:* ) ac_file_in=`echo "$ac_file" | sed 's,[^:]*:,,'`
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:4765: ac_file=`echo "$ac_file" | sed 's,:.*,,'` ;;
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-4766- * ) ac_file_in=$ac_file.in ;;
##############################################
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-5064-if test "$ac_dir" != .; then
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:5065: ac_dir_suffix=/`echo "$ac_dir" | sed 's,^\.[\\/],,'`
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-5066- # A "../" for each directory in $ac_dir_suffix.
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:5067: ac_top_builddir=`echo "$ac_dir_suffix" | sed 's,/[^\\/]*,../,g'`
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-5068-else
##############################################
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-5077- else
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:5078: ac_top_srcdir=`echo $ac_top_builddir | sed 's,/$,,'`
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-5079- fi ;;
##############################################
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-5086-esac
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:5087:# Don't blindly perform a `cd "$ac_dir"/$ac_foo && pwd` since $ac_foo can be
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-5088-# absolute.
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:5089:ac_abs_builddir=`cd "$ac_dir" && cd $ac_builddir && pwd`
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:5090:ac_abs_top_builddir=`cd "$ac_dir" && cd ${ac_top_builddir}. && pwd`
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:5091:ac_abs_srcdir=`cd "$ac_dir" && cd $ac_srcdir && pwd`
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure:5092:ac_abs_top_srcdir=`cd "$ac_dir" && cd $ac_top_srcdir && pwd`
hmmer2-2.3.2+dfsg/.pc/add-runstatedir-option.patch/configure-5093-
##############################################
hmmer2-2.3.2+dfsg/configure-45-do
hmmer2-2.3.2+dfsg/configure:46: if (set +x; test -n "`(eval $as_var=C; export $as_var) 2>&1`"); then
hmmer2-2.3.2+dfsg/configure-47- eval $as_var=C; export $as_var
##############################################
hmmer2-2.3.2+dfsg/configure-103- as_lineno_2=$LINENO
hmmer2-2.3.2+dfsg/configure:104: as_lineno_3=`(expr $as_lineno_1 + 1) 2>/dev/null`
hmmer2-2.3.2+dfsg/configure-105- test "x$as_lineno_1" != "x$as_lineno_2" &&
##############################################
hmmer2-2.3.2+dfsg/configure-142- as_lineno_2=$LINENO
hmmer2-2.3.2+dfsg/configure:143: as_lineno_3=`(expr $as_lineno_1 + 1) 2>/dev/null`
hmmer2-2.3.2+dfsg/configure-144- test "x$as_lineno_1" != "x$as_lineno_2" &&
##############################################
hmmer2-2.3.2+dfsg/configure-327-
hmmer2-2.3.2+dfsg/configure:328: ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
hmmer2-2.3.2+dfsg/configure-329-
##############################################
hmmer2-2.3.2+dfsg/configure-360- -disable-* | --disable-*)
hmmer2-2.3.2+dfsg/configure:361: ac_feature=`expr "x$ac_option" : 'x-*disable-\(.*\)'`
hmmer2-2.3.2+dfsg/configure-362- # Reject names that are not valid shell variable names.
##############################################
hmmer2-2.3.2+dfsg/configure-365- { (exit 1); exit 1; }; }
hmmer2-2.3.2+dfsg/configure:366: ac_feature=`echo $ac_feature | sed 's/-/_/g'`
hmmer2-2.3.2+dfsg/configure-367- eval "enable_$ac_feature=no" ;;
##############################################
hmmer2-2.3.2+dfsg/configure-369- -enable-* | --enable-*)
hmmer2-2.3.2+dfsg/configure:370: ac_feature=`expr "x$ac_option" : 'x-*enable-\([^=]*\)'`
hmmer2-2.3.2+dfsg/configure-371- # Reject names that are not valid shell variable names.
##############################################
hmmer2-2.3.2+dfsg/configure-374- { (exit 1); exit 1; }; }
hmmer2-2.3.2+dfsg/configure:375: ac_feature=`echo $ac_feature | sed 's/-/_/g'`
hmmer2-2.3.2+dfsg/configure-376- case $ac_option in
hmmer2-2.3.2+dfsg/configure:377: *=*) ac_optarg=`echo "$ac_optarg" | sed "s/'/'\\\\\\\\''/g"`;;
hmmer2-2.3.2+dfsg/configure-378- *) ac_optarg=yes ;;
##############################################
hmmer2-2.3.2+dfsg/configure-560- -with-* | --with-*)
hmmer2-2.3.2+dfsg/configure:561: ac_package=`expr "x$ac_option" : 'x-*with-\([^=]*\)'`
hmmer2-2.3.2+dfsg/configure-562- # Reject names that are not valid shell variable names.
##############################################
hmmer2-2.3.2+dfsg/configure-565- { (exit 1); exit 1; }; }
hmmer2-2.3.2+dfsg/configure:566: ac_package=`echo $ac_package| sed 's/-/_/g'`
hmmer2-2.3.2+dfsg/configure-567- case $ac_option in
hmmer2-2.3.2+dfsg/configure:568: *=*) ac_optarg=`echo "$ac_optarg" | sed "s/'/'\\\\\\\\''/g"`;;
hmmer2-2.3.2+dfsg/configure-569- *) ac_optarg=yes ;;
##############################################
hmmer2-2.3.2+dfsg/configure-573- -without-* | --without-*)
hmmer2-2.3.2+dfsg/configure:574: ac_package=`expr "x$ac_option" : 'x-*without-\(.*\)'`
hmmer2-2.3.2+dfsg/configure-575- # Reject names that are not valid shell variable names.
##############################################
hmmer2-2.3.2+dfsg/configure-578- { (exit 1); exit 1; }; }
hmmer2-2.3.2+dfsg/configure:579: ac_package=`echo $ac_package | sed 's/-/_/g'`
hmmer2-2.3.2+dfsg/configure-580- eval "with_$ac_package=no" ;;
##############################################
hmmer2-2.3.2+dfsg/configure-605- *=*)
hmmer2-2.3.2+dfsg/configure:606: ac_envvar=`expr "x$ac_option" : 'x\([^=]*\)='`
hmmer2-2.3.2+dfsg/configure-607- # Reject names that are not valid shell variable names.
##############################################
hmmer2-2.3.2+dfsg/configure-610- { (exit 1); exit 1; }; }
hmmer2-2.3.2+dfsg/configure:611: ac_optarg=`echo "$ac_optarg" | sed "s/'/'\\\\\\\\''/g"`
hmmer2-2.3.2+dfsg/configure-612- eval "$ac_envvar='$ac_optarg'"
##############################################
hmmer2-2.3.2+dfsg/configure-626-if test -n "$ac_prev"; then
hmmer2-2.3.2+dfsg/configure:627: ac_option=--`echo $ac_prev | sed 's/_/-/g'`
hmmer2-2.3.2+dfsg/configure-628- { echo "$as_me: error: missing argument to $ac_option" >&2
##############################################
hmmer2-2.3.2+dfsg/configure-634-do
hmmer2-2.3.2+dfsg/configure:635: eval ac_val=$`echo $ac_var`
hmmer2-2.3.2+dfsg/configure-636- case $ac_val in
##############################################
hmmer2-2.3.2+dfsg/configure-646-do
hmmer2-2.3.2+dfsg/configure:647: eval ac_val=$`echo $ac_var`
hmmer2-2.3.2+dfsg/configure-648- case $ac_val in
##############################################
hmmer2-2.3.2+dfsg/configure-713- { (exit 1); exit 1; }; }
hmmer2-2.3.2+dfsg/configure:714:srcdir=`echo "$srcdir" | sed 's%\([^\\/]\)[\\/]*$%\1%'`
hmmer2-2.3.2+dfsg/configure-715-ac_env_build_alias_set=${build_alias+set}
##############################################
hmmer2-2.3.2+dfsg/configure-780-By default, \`make install' will install all the files in
hmmer2-2.3.2+dfsg/configure:781:\`$ac_default_prefix/bin', \`$ac_default_prefix/lib' etc. You can specify
hmmer2-2.3.2+dfsg/configure:782:an installation prefix other than \`$ac_default_prefix' using \`--prefix',
hmmer2-2.3.2+dfsg/configure-783-for instance \`--prefix=\$HOME'.
##############################################
hmmer2-2.3.2+dfsg/configure-851-if test "$ac_dir" != .; then
hmmer2-2.3.2+dfsg/configure:852: ac_dir_suffix=/`echo "$ac_dir" | sed 's,^\.[\\/],,'`
hmmer2-2.3.2+dfsg/configure-853- # A "../" for each directory in $ac_dir_suffix.
hmmer2-2.3.2+dfsg/configure:854: ac_top_builddir=`echo "$ac_dir_suffix" | sed 's,/[^\\/]*,../,g'`
hmmer2-2.3.2+dfsg/configure-855-else
##############################################
hmmer2-2.3.2+dfsg/configure-864- else
hmmer2-2.3.2+dfsg/configure:865: ac_top_srcdir=`echo $ac_top_builddir | sed 's,/$,,'`
hmmer2-2.3.2+dfsg/configure-866- fi ;;
##############################################
hmmer2-2.3.2+dfsg/configure-873-esac
hmmer2-2.3.2+dfsg/configure:874:# Don't blindly perform a `cd "$ac_dir"/$ac_foo && pwd` since $ac_foo can be
hmmer2-2.3.2+dfsg/configure-875-# absolute.
hmmer2-2.3.2+dfsg/configure:876:ac_abs_builddir=`cd "$ac_dir" && cd $ac_builddir && pwd`
hmmer2-2.3.2+dfsg/configure:877:ac_abs_top_builddir=`cd "$ac_dir" && cd ${ac_top_builddir}. && pwd`
hmmer2-2.3.2+dfsg/configure:878:ac_abs_srcdir=`cd "$ac_dir" && cd $ac_srcdir && pwd`
hmmer2-2.3.2+dfsg/configure:879:ac_abs_top_srcdir=`cd "$ac_dir" && cd $ac_top_srcdir && pwd`
hmmer2-2.3.2+dfsg/configure-880-
##############################################
hmmer2-2.3.2+dfsg/configure-988- *" "*|*" "*|*[\[\]\~\#\$\^\&\*\(\)\{\}\\\|\;\<\>\?\"\']*)
hmmer2-2.3.2+dfsg/configure:989: ac_arg=`echo "$ac_arg" | sed "s/'/'\\\\\\\\''/g"` ;;
hmmer2-2.3.2+dfsg/configure-990- esac
##############################################
hmmer2-2.3.2+dfsg/configure-1060- do
hmmer2-2.3.2+dfsg/configure:1061: eval ac_val=$`echo $ac_var`
hmmer2-2.3.2+dfsg/configure-1062- echo "$ac_var='"'"'$ac_val'"'"'"
##############################################
hmmer2-2.3.2+dfsg/configure-1074- do
hmmer2-2.3.2+dfsg/configure:1075: eval ac_val=$`echo $ac_var`
hmmer2-2.3.2+dfsg/configure-1076- echo "$ac_var='"'"'$ac_val'"'"'"
##############################################
hmmer2-2.3.2+dfsg/configure-1181- set,)
hmmer2-2.3.2+dfsg/configure:1182: { echo "$as_me:$LINENO: error: \`$ac_var' was set to \`$ac_old_val' in the previous run" >&5
hmmer2-2.3.2+dfsg/configure:1183:echo "$as_me: error: \`$ac_var' was set to \`$ac_old_val' in the previous run" >&2;}
hmmer2-2.3.2+dfsg/configure-1184- ac_cache_corrupted=: ;;
##############################################
hmmer2-2.3.2+dfsg/configure-1204- *" "*|*" "*|*[\[\]\~\#\$\^\&\*\(\)\{\}\\\|\;\<\>\?\"\']*)
hmmer2-2.3.2+dfsg/configure:1205: ac_arg=$ac_var=`echo "$ac_new_val" | sed "s/'/'\\\\\\\\''/g"` ;;
hmmer2-2.3.2+dfsg/configure-1206- *) ac_arg=$ac_var=$ac_new_val ;;
##############################################
hmmer2-2.3.2+dfsg/configure-1625- "checking for C compiler version" >&5
hmmer2-2.3.2+dfsg/configure:1626:ac_compiler=`set X $ac_compile; echo $2`
hmmer2-2.3.2+dfsg/configure-1627-{ (eval echo "$as_me:$LINENO: \"$ac_compiler --version </dev/null >&5\"") >&5
##############################################
hmmer2-2.3.2+dfsg/configure-1665-echo $ECHO_N "checking for C compiler default output... $ECHO_C" >&6
hmmer2-2.3.2+dfsg/configure:1666:ac_link_default=`echo "$ac_link" | sed 's/ -o *conftest[^ ]*//'`
hmmer2-2.3.2+dfsg/configure-1667-if { (eval echo "$as_me:$LINENO: \"$ac_link_default\"") >&5
##############################################
hmmer2-2.3.2+dfsg/configure-1693- *.* )
hmmer2-2.3.2+dfsg/configure:1694: ac_cv_exeext=`expr "$ac_file" : '[^.]*\(\..*\)'`
hmmer2-2.3.2+dfsg/configure-1695- # FIXME: I believe we export ac_cv_exeext for Libtool,
##############################################
hmmer2-2.3.2+dfsg/configure-1773- *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.o | *.obj ) ;;
hmmer2-2.3.2+dfsg/configure:1774: *.* ) ac_cv_exeext=`expr "$ac_file" : '[^.]*\(\..*\)'`
hmmer2-2.3.2+dfsg/configure-1775- export ac_cv_exeext
##############################################
hmmer2-2.3.2+dfsg/configure-1824- *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg ) ;;
hmmer2-2.3.2+dfsg/configure:1825: *) ac_cv_objext=`expr "$ac_file" : '.*\.\(.*\)'`
hmmer2-2.3.2+dfsg/configure-1826- break;;
##############################################
hmmer2-2.3.2+dfsg/configure-1894-echo "${ECHO_T}$ac_cv_c_compiler_gnu" >&6
hmmer2-2.3.2+dfsg/configure:1895:GCC=`test $ac_compiler_gnu = yes && echo yes`
hmmer2-2.3.2+dfsg/configure-1896-ac_test_CFLAGS=${CFLAGS+set}
##############################################
hmmer2-2.3.2+dfsg/configure-2348-test -z "$ac_cv_build_alias" &&
hmmer2-2.3.2+dfsg/configure:2349: ac_cv_build_alias=`$ac_config_guess`
hmmer2-2.3.2+dfsg/configure-2350-test -z "$ac_cv_build_alias" &&
##############################################
hmmer2-2.3.2+dfsg/configure-2353- { (exit 1); exit 1; }; }
hmmer2-2.3.2+dfsg/configure:2354:ac_cv_build=`$ac_config_sub $ac_cv_build_alias` ||
hmmer2-2.3.2+dfsg/configure-2355- { { echo "$as_me:$LINENO: error: $ac_config_sub $ac_cv_build_alias failed" >&5
##############################################
hmmer2-2.3.2+dfsg/configure-2362-build=$ac_cv_build
hmmer2-2.3.2+dfsg/configure:2363:build_cpu=`echo $ac_cv_build | sed 's/^\([^-]*\)-\([^-]*\)-\(.*\)$/\1/'`
hmmer2-2.3.2+dfsg/configure:2364:build_vendor=`echo $ac_cv_build | sed 's/^\([^-]*\)-\([^-]*\)-\(.*\)$/\2/'`
hmmer2-2.3.2+dfsg/configure:2365:build_os=`echo $ac_cv_build | sed 's/^\([^-]*\)-\([^-]*\)-\(.*\)$/\3/'`
hmmer2-2.3.2+dfsg/configure-2366-
##############################################
hmmer2-2.3.2+dfsg/configure-2375- ac_cv_host_alias=$ac_cv_build_alias
hmmer2-2.3.2+dfsg/configure:2376:ac_cv_host=`$ac_config_sub $ac_cv_host_alias` ||
hmmer2-2.3.2+dfsg/configure-2377- { { echo "$as_me:$LINENO: error: $ac_config_sub $ac_cv_host_alias failed" >&5
##############################################
hmmer2-2.3.2+dfsg/configure-2384-host=$ac_cv_host
hmmer2-2.3.2+dfsg/configure:2385:host_cpu=`echo $ac_cv_host | sed 's/^\([^-]*\)-\([^-]*\)-\(.*\)$/\1/'`
hmmer2-2.3.2+dfsg/configure:2386:host_vendor=`echo $ac_cv_host | sed 's/^\([^-]*\)-\([^-]*\)-\(.*\)$/\2/'`
hmmer2-2.3.2+dfsg/configure:2387:host_os=`echo $ac_cv_host | sed 's/^\([^-]*\)-\([^-]*\)-\(.*\)$/\3/'`
hmmer2-2.3.2+dfsg/configure-2388-
##############################################
hmmer2-2.3.2+dfsg/configure-2696-do
hmmer2-2.3.2+dfsg/configure:2697:as_ac_var=`echo "ac_cv_func_$ac_func" | $as_tr_sh`
hmmer2-2.3.2+dfsg/configure-2698-echo "$as_me:$LINENO: checking for $ac_func" >&5
##############################################
hmmer2-2.3.2+dfsg/configure-2767-fi
hmmer2-2.3.2+dfsg/configure:2768:echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_var'}'`" >&5
hmmer2-2.3.2+dfsg/configure:2769:echo "${ECHO_T}`eval echo '${'$as_ac_var'}'`" >&6
hmmer2-2.3.2+dfsg/configure:2770:if test `eval echo '${'$as_ac_var'}'` = yes; then
hmmer2-2.3.2+dfsg/configure-2771- cat >>confdefs.h <<_ACEOF
hmmer2-2.3.2+dfsg/configure:2772:#define `echo "HAVE_$ac_func" | $as_tr_cpp` 1
hmmer2-2.3.2+dfsg/configure-2773-_ACEOF
##############################################
hmmer2-2.3.2+dfsg/configure-2780-do
hmmer2-2.3.2+dfsg/configure:2781:as_ac_var=`echo "ac_cv_func_$ac_func" | $as_tr_sh`
hmmer2-2.3.2+dfsg/configure-2782-echo "$as_me:$LINENO: checking for $ac_func" >&5
##############################################
hmmer2-2.3.2+dfsg/configure-2851-fi
hmmer2-2.3.2+dfsg/configure:2852:echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_var'}'`" >&5
hmmer2-2.3.2+dfsg/configure:2853:echo "${ECHO_T}`eval echo '${'$as_ac_var'}'`" >&6
hmmer2-2.3.2+dfsg/configure:2854:if test `eval echo '${'$as_ac_var'}'` = yes; then
hmmer2-2.3.2+dfsg/configure-2855- cat >>confdefs.h <<_ACEOF
hmmer2-2.3.2+dfsg/configure:2856:#define `echo "HAVE_$ac_func" | $as_tr_cpp` 1
hmmer2-2.3.2+dfsg/configure-2857-_ACEOF
##############################################
hmmer2-2.3.2+dfsg/configure-3280-do
hmmer2-2.3.2+dfsg/configure:3281:as_ac_var=`echo "ac_cv_func_$ac_func" | $as_tr_sh`
hmmer2-2.3.2+dfsg/configure-3282-echo "$as_me:$LINENO: checking for $ac_func" >&5
##############################################
hmmer2-2.3.2+dfsg/configure-3351-fi
hmmer2-2.3.2+dfsg/configure:3352:echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_var'}'`" >&5
hmmer2-2.3.2+dfsg/configure:3353:echo "${ECHO_T}`eval echo '${'$as_ac_var'}'`" >&6
hmmer2-2.3.2+dfsg/configure:3354:if test `eval echo '${'$as_ac_var'}'` = yes; then
hmmer2-2.3.2+dfsg/configure-3355- cat >>confdefs.h <<_ACEOF
hmmer2-2.3.2+dfsg/configure:3356:#define `echo "HAVE_$ac_func" | $as_tr_cpp` 1
hmmer2-2.3.2+dfsg/configure-3357-_ACEOF
##############################################
hmmer2-2.3.2+dfsg/configure-3429-do
hmmer2-2.3.2+dfsg/configure:3430:as_ac_var=`echo "ac_cv_func_$ac_func" | $as_tr_sh`
hmmer2-2.3.2+dfsg/configure-3431-echo "$as_me:$LINENO: checking for $ac_func" >&5
##############################################
hmmer2-2.3.2+dfsg/configure-3500-fi
hmmer2-2.3.2+dfsg/configure:3501:echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_var'}'`" >&5
hmmer2-2.3.2+dfsg/configure:3502:echo "${ECHO_T}`eval echo '${'$as_ac_var'}'`" >&6
hmmer2-2.3.2+dfsg/configure:3503:if test `eval echo '${'$as_ac_var'}'` = yes; then
hmmer2-2.3.2+dfsg/configure-3504- cat >>confdefs.h <<_ACEOF
hmmer2-2.3.2+dfsg/configure:3505:#define `echo "HAVE_$ac_func" | $as_tr_cpp` 1
hmmer2-2.3.2+dfsg/configure-3506-_ACEOF
##############################################
hmmer2-2.3.2+dfsg/configure-3578-do
hmmer2-2.3.2+dfsg/configure:3579:as_ac_var=`echo "ac_cv_func_$ac_func" | $as_tr_sh`
hmmer2-2.3.2+dfsg/configure-3580-echo "$as_me:$LINENO: checking for $ac_func" >&5
##############################################
hmmer2-2.3.2+dfsg/configure-3649-fi
hmmer2-2.3.2+dfsg/configure:3650:echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_var'}'`" >&5
hmmer2-2.3.2+dfsg/configure:3651:echo "${ECHO_T}`eval echo '${'$as_ac_var'}'`" >&6
hmmer2-2.3.2+dfsg/configure:3652:if test `eval echo '${'$as_ac_var'}'` = yes; then
hmmer2-2.3.2+dfsg/configure-3653- cat >>confdefs.h <<_ACEOF
hmmer2-2.3.2+dfsg/configure:3654:#define `echo "HAVE_$ac_func" | $as_tr_cpp` 1
hmmer2-2.3.2+dfsg/configure-3655-_ACEOF
##############################################
hmmer2-2.3.2+dfsg/configure-3727-do
hmmer2-2.3.2+dfsg/configure:3728:as_ac_var=`echo "ac_cv_func_$ac_func" | $as_tr_sh`
hmmer2-2.3.2+dfsg/configure-3729-echo "$as_me:$LINENO: checking for $ac_func" >&5
##############################################
hmmer2-2.3.2+dfsg/configure-3798-fi
hmmer2-2.3.2+dfsg/configure:3799:echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_var'}'`" >&5
hmmer2-2.3.2+dfsg/configure:3800:echo "${ECHO_T}`eval echo '${'$as_ac_var'}'`" >&6
hmmer2-2.3.2+dfsg/configure:3801:if test `eval echo '${'$as_ac_var'}'` = yes; then
hmmer2-2.3.2+dfsg/configure-3802- cat >>confdefs.h <<_ACEOF
hmmer2-2.3.2+dfsg/configure:3803:#define `echo "HAVE_$ac_func" | $as_tr_cpp` 1
hmmer2-2.3.2+dfsg/configure-3804-_ACEOF
##############################################
hmmer2-2.3.2+dfsg/configure-4048-do
hmmer2-2.3.2+dfsg/configure:4049: if (set +x; test -n "`(eval $as_var=C; export $as_var) 2>&1`"); then
hmmer2-2.3.2+dfsg/configure-4050- eval $as_var=C; export $as_var
##############################################
hmmer2-2.3.2+dfsg/configure-4106- as_lineno_2=$LINENO
hmmer2-2.3.2+dfsg/configure:4107: as_lineno_3=`(expr $as_lineno_1 + 1) 2>/dev/null`
hmmer2-2.3.2+dfsg/configure-4108- test "x$as_lineno_1" != "x$as_lineno_2" &&
##############################################
hmmer2-2.3.2+dfsg/configure-4146- as_lineno_2=$LINENO
hmmer2-2.3.2+dfsg/configure:4147: as_lineno_3=`(expr $as_lineno_1 + 1) 2>/dev/null`
hmmer2-2.3.2+dfsg/configure-4148- test "x$as_lineno_1" != "x$as_lineno_2" &&
##############################################
hmmer2-2.3.2+dfsg/configure-4324-configured by $0, generated by GNU Autoconf 2.57,
hmmer2-2.3.2+dfsg/configure:4325: with options \\"`echo "$ac_configure_args" | sed 's/[\\""\`\$]/\\\\&/g'`\\"
hmmer2-2.3.2+dfsg/configure-4326-
##############################################
hmmer2-2.3.2+dfsg/configure-4341- --*=*)
hmmer2-2.3.2+dfsg/configure:4342: ac_option=`expr "x$1" : 'x\([^=]*\)='`
hmmer2-2.3.2+dfsg/configure:4343: ac_optarg=`expr "x$1" : 'x[^=]*=\(.*\)'`
hmmer2-2.3.2+dfsg/configure-4344- ac_shift=:
##############################################
hmmer2-2.3.2+dfsg/configure-4581- fi
hmmer2-2.3.2+dfsg/configure:4582: ac_sed_frag=`expr $ac_sed_frag + 1`
hmmer2-2.3.2+dfsg/configure-4583- ac_beg=$ac_end
hmmer2-2.3.2+dfsg/configure:4584: ac_end=`expr $ac_end + $ac_max_sed_lines`
hmmer2-2.3.2+dfsg/configure-4585- fi
##############################################
hmmer2-2.3.2+dfsg/configure-4598- cat >$tmp/stdin
hmmer2-2.3.2+dfsg/configure:4599: ac_file_in=`echo "$ac_file" | sed 's,[^:]*:,,'`
hmmer2-2.3.2+dfsg/configure:4600: ac_file=`echo "$ac_file" | sed 's,:.*,,'` ;;
hmmer2-2.3.2+dfsg/configure:4601: *:* ) ac_file_in=`echo "$ac_file" | sed 's,[^:]*:,,'`
hmmer2-2.3.2+dfsg/configure:4602: ac_file=`echo "$ac_file" | sed 's,:.*,,'` ;;
hmmer2-2.3.2+dfsg/configure-4603- * ) ac_file_in=$ac_file.in ;;
##############################################
hmmer2-2.3.2+dfsg/configure-4646-if test "$ac_dir" != .; then
hmmer2-2.3.2+dfsg/configure:4647: ac_dir_suffix=/`echo "$ac_dir" | sed 's,^\.[\\/],,'`
hmmer2-2.3.2+dfsg/configure-4648- # A "../" for each directory in $ac_dir_suffix.
hmmer2-2.3.2+dfsg/configure:4649: ac_top_builddir=`echo "$ac_dir_suffix" | sed 's,/[^\\/]*,../,g'`
hmmer2-2.3.2+dfsg/configure-4650-else
##############################################
hmmer2-2.3.2+dfsg/configure-4659- else
hmmer2-2.3.2+dfsg/configure:4660: ac_top_srcdir=`echo $ac_top_builddir | sed 's,/$,,'`
hmmer2-2.3.2+dfsg/configure-4661- fi ;;
##############################################
hmmer2-2.3.2+dfsg/configure-4668-esac
hmmer2-2.3.2+dfsg/configure:4669:# Don't blindly perform a `cd "$ac_dir"/$ac_foo && pwd` since $ac_foo can be
hmmer2-2.3.2+dfsg/configure-4670-# absolute.
hmmer2-2.3.2+dfsg/configure:4671:ac_abs_builddir=`cd "$ac_dir" && cd $ac_builddir && pwd`
hmmer2-2.3.2+dfsg/configure:4672:ac_abs_top_builddir=`cd "$ac_dir" && cd ${ac_top_builddir}. && pwd`
hmmer2-2.3.2+dfsg/configure:4673:ac_abs_srcdir=`cd "$ac_dir" && cd $ac_srcdir && pwd`
hmmer2-2.3.2+dfsg/configure:4674:ac_abs_top_srcdir=`cd "$ac_dir" && cd $ac_top_srcdir && pwd`
hmmer2-2.3.2+dfsg/configure-4675-
##############################################
hmmer2-2.3.2+dfsg/configure-4773- cat >$tmp/stdin
hmmer2-2.3.2+dfsg/configure:4774: ac_file_in=`echo "$ac_file" | sed 's,[^:]*:,,'`
hmmer2-2.3.2+dfsg/configure:4775: ac_file=`echo "$ac_file" | sed 's,:.*,,'` ;;
hmmer2-2.3.2+dfsg/configure:4776: *:* ) ac_file_in=`echo "$ac_file" | sed 's,[^:]*:,,'`
hmmer2-2.3.2+dfsg/configure:4777: ac_file=`echo "$ac_file" | sed 's,:.*,,'` ;;
hmmer2-2.3.2+dfsg/configure-4778- * ) ac_file_in=$ac_file.in ;;
##############################################
hmmer2-2.3.2+dfsg/configure-5076-if test "$ac_dir" != .; then
hmmer2-2.3.2+dfsg/configure:5077: ac_dir_suffix=/`echo "$ac_dir" | sed 's,^\.[\\/],,'`
hmmer2-2.3.2+dfsg/configure-5078- # A "../" for each directory in $ac_dir_suffix.
hmmer2-2.3.2+dfsg/configure:5079: ac_top_builddir=`echo "$ac_dir_suffix" | sed 's,/[^\\/]*,../,g'`
hmmer2-2.3.2+dfsg/configure-5080-else
##############################################
hmmer2-2.3.2+dfsg/configure-5089- else
hmmer2-2.3.2+dfsg/configure:5090: ac_top_srcdir=`echo $ac_top_builddir | sed 's,/$,,'`
hmmer2-2.3.2+dfsg/configure-5091- fi ;;
##############################################
hmmer2-2.3.2+dfsg/configure-5098-esac
hmmer2-2.3.2+dfsg/configure:5099:# Don't blindly perform a `cd "$ac_dir"/$ac_foo && pwd` since $ac_foo can be
hmmer2-2.3.2+dfsg/configure-5100-# absolute.
hmmer2-2.3.2+dfsg/configure:5101:ac_abs_builddir=`cd "$ac_dir" && cd $ac_builddir && pwd`
hmmer2-2.3.2+dfsg/configure:5102:ac_abs_top_builddir=`cd "$ac_dir" && cd ${ac_top_builddir}. && pwd`
hmmer2-2.3.2+dfsg/configure:5103:ac_abs_srcdir=`cd "$ac_dir" && cd $ac_srcdir && pwd`
hmmer2-2.3.2+dfsg/configure:5104:ac_abs_top_srcdir=`cd "$ac_dir" && cd $ac_top_srcdir && pwd`
hmmer2-2.3.2+dfsg/configure-5105-