=========================================================== .___ __ __ _________________ __ __ __| _/|__|/ |_ / ___\_` __ \__ \ | | \/ __ | | \\_ __\ / /_/ > | \// __ \| | / /_/ | | || | \___ /|__| (____ /____/\____ | |__||__| /_____/ \/ \/ grep rough audit - static analysis tool v2.8 written by @Wireghoul =================================[justanotherhacker.com]=== m2m-aligner-1.2/tclap-1.2.1/include/Makefile.in-199- dot_seen=no; \ m2m-aligner-1.2/tclap-1.2.1/include/Makefile.in:200: target=`echo $@ | sed s/-recursive//`; \ m2m-aligner-1.2/tclap-1.2.1/include/Makefile.in-201- list='$(SUBDIRS)'; for subdir in $$list; do \ ############################################## m2m-aligner-1.2/tclap-1.2.1/include/Makefile.in-234- rev="$$rev ."; \ m2m-aligner-1.2/tclap-1.2.1/include/Makefile.in:235: target=`echo $@ | sed s/-recursive//`; \ m2m-aligner-1.2/tclap-1.2.1/include/Makefile.in-236- for subdir in $$rev; do \ ############################################## m2m-aligner-1.2/tclap-1.2.1/include/Makefile.in-308-GTAGS: m2m-aligner-1.2/tclap-1.2.1/include/Makefile.in:309: here=`$(am__cd) $(top_builddir) && pwd` \ m2m-aligner-1.2/tclap-1.2.1/include/Makefile.in-310- && cd $(top_srcdir) \ ############################################## m2m-aligner-1.2/tclap-1.2.1/include/Makefile.in-316-distdir: $(DISTFILES) m2m-aligner-1.2/tclap-1.2.1/include/Makefile.in:317: @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \ m2m-aligner-1.2/tclap-1.2.1/include/Makefile.in:318: topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \ m2m-aligner-1.2/tclap-1.2.1/include/Makefile.in-319- list='$(DISTFILES)'; \ ############################################## m2m-aligner-1.2/tclap-1.2.1/include/Makefile.in-330- if test -d $$d/$$file; then \ m2m-aligner-1.2/tclap-1.2.1/include/Makefile.in:331: dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \ m2m-aligner-1.2/tclap-1.2.1/include/Makefile.in-332- if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \ ############################################## m2m-aligner-1.2/tclap-1.2.1/include/Makefile.in-346- || exit 1; \ m2m-aligner-1.2/tclap-1.2.1/include/Makefile.in:347: distdir=`$(am__cd) $(distdir) && pwd`; \ m2m-aligner-1.2/tclap-1.2.1/include/Makefile.in:348: top_distdir=`$(am__cd) $(top_distdir) && pwd`; \ m2m-aligner-1.2/tclap-1.2.1/include/Makefile.in-349- (cd $$subdir && \ ############################################## m2m-aligner-1.2/tclap-1.2.1/include/tclap/Makefile.in-50-DIST_SOURCES = m2m-aligner-1.2/tclap-1.2.1/include/tclap/Makefile.in:51:am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`; m2m-aligner-1.2/tclap-1.2.1/include/tclap/Makefile.in-52-am__vpath_adj = case $$p in \ m2m-aligner-1.2/tclap-1.2.1/include/tclap/Makefile.in:53: $(srcdir)/*) f=`echo "$$p" | sed "s|^$$srcdirstrip/||"`;; \ m2m-aligner-1.2/tclap-1.2.1/include/tclap/Makefile.in-54- *) f=$$p;; \ m2m-aligner-1.2/tclap-1.2.1/include/tclap/Makefile.in-55- esac; m2m-aligner-1.2/tclap-1.2.1/include/tclap/Makefile.in:56:am__strip_dir = `echo $$p | sed -e 's|^.*/||'`; m2m-aligner-1.2/tclap-1.2.1/include/tclap/Makefile.in-57-am__installdirs = "$(DESTDIR)$(libtclapincludedir)" ############################################## m2m-aligner-1.2/tclap-1.2.1/include/tclap/Makefile.in-268-GTAGS: m2m-aligner-1.2/tclap-1.2.1/include/tclap/Makefile.in:269: here=`$(am__cd) $(top_builddir) && pwd` \ m2m-aligner-1.2/tclap-1.2.1/include/tclap/Makefile.in-270- && cd $(top_srcdir) \ ############################################## m2m-aligner-1.2/tclap-1.2.1/include/tclap/Makefile.in-276-distdir: $(DISTFILES) m2m-aligner-1.2/tclap-1.2.1/include/tclap/Makefile.in:277: @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \ m2m-aligner-1.2/tclap-1.2.1/include/tclap/Makefile.in:278: topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \ m2m-aligner-1.2/tclap-1.2.1/include/tclap/Makefile.in-279- list='$(DISTFILES)'; \ ############################################## m2m-aligner-1.2/tclap-1.2.1/include/tclap/Makefile.in-290- if test -d $$d/$$file; then \ m2m-aligner-1.2/tclap-1.2.1/include/tclap/Makefile.in:291: dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \ m2m-aligner-1.2/tclap-1.2.1/include/tclap/Makefile.in-292- if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \ ############################################## m2m-aligner-1.2/tclap-1.2.1/aclocal.m4-62-# $ac_aux_dir to `$srcdir/foo'. In other projects, it is set to m2m-aligner-1.2/tclap-1.2.1/aclocal.m4:63:# `$srcdir', `$srcdir/..', or `$srcdir/../..'. m2m-aligner-1.2/tclap-1.2.1/aclocal.m4-64-# ############################################## m2m-aligner-1.2/tclap-1.2.1/aclocal.m4-86-# iff we strip the leading $srcdir from $ac_aux_dir. That would be: m2m-aligner-1.2/tclap-1.2.1/aclocal.m4:87:# am_aux_dir='\$(top_srcdir)/'`expr "$ac_aux_dir" : "$srcdir//*\(.*\)"` m2m-aligner-1.2/tclap-1.2.1/aclocal.m4-88-# and then we would define $MISSING as ############################################## m2m-aligner-1.2/tclap-1.2.1/aclocal.m4-102-# expand $ac_aux_dir to an absolute path m2m-aligner-1.2/tclap-1.2.1/aclocal.m4:103:am_aux_dir=`cd $ac_aux_dir && pwd` m2m-aligner-1.2/tclap-1.2.1/aclocal.m4-104-]) ############################################## m2m-aligner-1.2/tclap-1.2.1/aclocal.m4-202- if test "$am_compiler_list" = ""; then m2m-aligner-1.2/tclap-1.2.1/aclocal.m4:203: am_compiler_list=`sed -n ['s/^#*\([a-zA-Z0-9]*\))$/\1/p'] < ./depcomp` m2m-aligner-1.2/tclap-1.2.1/aclocal.m4-204- fi ############################################## m2m-aligner-1.2/tclap-1.2.1/aclocal.m4-314- # Strip MF so we end up with the name of the file. m2m-aligner-1.2/tclap-1.2.1/aclocal.m4:315: mf=`echo "$mf" | sed -e 's/:.*$//'` m2m-aligner-1.2/tclap-1.2.1/aclocal.m4-316- # Check whether this is an Automake generated Makefile or not. ############################################## m2m-aligner-1.2/tclap-1.2.1/aclocal.m4-323- if sed 10q "$mf" | grep '^#.*generated by automake' > /dev/null 2>&1; 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then m2m-aligner-1.2/tclap-1.2.1/aclocal.m4-413- # Use -I$(srcdir) only when $(srcdir) != ., so that make's output ############################################## m2m-aligner-1.2/tclap-1.2.1/aclocal.m4-499- * ) m2m-aligner-1.2/tclap-1.2.1/aclocal.m4:500: _am_stamp_count=`expr $_am_stamp_count + 1` ;; m2m-aligner-1.2/tclap-1.2.1/aclocal.m4-501- esac m2m-aligner-1.2/tclap-1.2.1/aclocal.m4-502-done m2m-aligner-1.2/tclap-1.2.1/aclocal.m4:503:echo "timestamp for $1" >`AS_DIRNAME([$1])`/stamp-h[]$_am_stamp_count]) m2m-aligner-1.2/tclap-1.2.1/aclocal.m4-504- ############################################## m2m-aligner-1.2/tclap-1.2.1/aclocal.m4-571-# case it prints its new name instead of `make'. m2m-aligner-1.2/tclap-1.2.1/aclocal.m4:572:if test "`$am_make -s -f confmf 2> /dev/null | grep -v 'ing directory'`" = "done"; then m2m-aligner-1.2/tclap-1.2.1/aclocal.m4-573- am__include=include ############################################## m2m-aligner-1.2/tclap-1.2.1/aclocal.m4-579- echo '.include "confinc"' > confmf m2m-aligner-1.2/tclap-1.2.1/aclocal.m4:580: if test "`$am_make -s -f confmf 2> /dev/null`" = "done"; then m2m-aligner-1.2/tclap-1.2.1/aclocal.m4-581- am__include=.include ############################################## m2m-aligner-1.2/tclap-1.2.1/aclocal.m4-710-if ( m2m-aligner-1.2/tclap-1.2.1/aclocal.m4:711: set X `ls -Lt $srcdir/configure conftest.file 2> /dev/null` m2m-aligner-1.2/tclap-1.2.1/aclocal.m4-712- if test "$[*]" = "X"; then m2m-aligner-1.2/tclap-1.2.1/aclocal.m4-713- # -L didn't work. m2m-aligner-1.2/tclap-1.2.1/aclocal.m4:714: set X `ls -t $srcdir/configure conftest.file` m2m-aligner-1.2/tclap-1.2.1/aclocal.m4-715- fi ############################################## m2m-aligner-1.2/tclap-1.2.1/Makefile.in-60- ps-recursive uninstall-recursive m2m-aligner-1.2/tclap-1.2.1/Makefile.in:61:am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`; m2m-aligner-1.2/tclap-1.2.1/Makefile.in-62-am__vpath_adj = case $$p in \ m2m-aligner-1.2/tclap-1.2.1/Makefile.in:63: $(srcdir)/*) f=`echo "$$p" | sed "s|^$$srcdirstrip/||"`;; \ m2m-aligner-1.2/tclap-1.2.1/Makefile.in-64- *) f=$$p;; \ m2m-aligner-1.2/tclap-1.2.1/Makefile.in-65- esac; m2m-aligner-1.2/tclap-1.2.1/Makefile.in:66:am__strip_dir = `echo $$p | sed -e 's|^.*/||'`; m2m-aligner-1.2/tclap-1.2.1/Makefile.in-67-am__installdirs = "$(DESTDIR)$(pkgconfigdir)" ############################################## m2m-aligner-1.2/tclap-1.2.1/Makefile.in-251- dot_seen=no; \ m2m-aligner-1.2/tclap-1.2.1/Makefile.in:252: target=`echo $@ | sed s/-recursive//`; \ m2m-aligner-1.2/tclap-1.2.1/Makefile.in-253- list='$(SUBDIRS)'; for subdir in $$list; do \ ############################################## m2m-aligner-1.2/tclap-1.2.1/Makefile.in-286- rev="$$rev ."; \ m2m-aligner-1.2/tclap-1.2.1/Makefile.in:287: target=`echo $@ | sed s/-recursive//`; \ m2m-aligner-1.2/tclap-1.2.1/Makefile.in-288- for subdir in $$rev; do \ ############################################## m2m-aligner-1.2/tclap-1.2.1/Makefile.in-360-GTAGS: m2m-aligner-1.2/tclap-1.2.1/Makefile.in:361: here=`$(am__cd) $(top_builddir) && pwd` \ m2m-aligner-1.2/tclap-1.2.1/Makefile.in-362- && cd $(top_srcdir) \ ############################################## m2m-aligner-1.2/tclap-1.2.1/Makefile.in-370- test -d $(distdir) || mkdir $(distdir) m2m-aligner-1.2/tclap-1.2.1/Makefile.in:371: @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \ m2m-aligner-1.2/tclap-1.2.1/Makefile.in:372: topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \ m2m-aligner-1.2/tclap-1.2.1/Makefile.in-373- list='$(DISTFILES)'; \ ############################################## m2m-aligner-1.2/tclap-1.2.1/Makefile.in-384- if test -d $$d/$$file; then \ m2m-aligner-1.2/tclap-1.2.1/Makefile.in:385: dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \ m2m-aligner-1.2/tclap-1.2.1/Makefile.in-386- if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \ ############################################## m2m-aligner-1.2/tclap-1.2.1/Makefile.in-400- || exit 1; \ m2m-aligner-1.2/tclap-1.2.1/Makefile.in:401: distdir=`$(am__cd) $(distdir) && pwd`; \ m2m-aligner-1.2/tclap-1.2.1/Makefile.in:402: top_distdir=`$(am__cd) $(top_distdir) && pwd`; \ m2m-aligner-1.2/tclap-1.2.1/Makefile.in-403- (cd $$subdir && \ ############################################## m2m-aligner-1.2/tclap-1.2.1/Makefile.in-462- chmod a-w $(distdir) m2m-aligner-1.2/tclap-1.2.1/Makefile.in:463: dc_install_base=`$(am__cd) $(distdir)/_inst && pwd | sed -e 's,^[^:\\/]:[\\/],/,'` \ m2m-aligner-1.2/tclap-1.2.1/Makefile.in-464- && dc_destdir="$${TMPDIR-/tmp}/am-dc-$$$$/" \ ############################################## m2m-aligner-1.2/tclap-1.2.1/Makefile.in-493- @cd $(distuninstallcheck_dir) \ m2m-aligner-1.2/tclap-1.2.1/Makefile.in:494: && test `$(distuninstallcheck_listfiles) | wc -l` -le 1 \ m2m-aligner-1.2/tclap-1.2.1/Makefile.in-495- || { echo "ERROR: files left after uninstall:" ; \ ############################################## m2m-aligner-1.2/tclap-1.2.1/Makefile.in-505- fi m2m-aligner-1.2/tclap-1.2.1/Makefile.in:506: @test `$(distcleancheck_listfiles) | wc -l` -eq 0 \ m2m-aligner-1.2/tclap-1.2.1/Makefile.in-507- || { echo "ERROR: files left in build directory after distclean:" ; \ ############################################## m2m-aligner-1.2/tclap-1.2.1/tests/Makefile.in-347- if $(TESTS_ENVIRONMENT) $${dir}$$tst; then \ m2m-aligner-1.2/tclap-1.2.1/tests/Makefile.in:348: all=`expr $$all + 1`; \ m2m-aligner-1.2/tclap-1.2.1/tests/Makefile.in-349- case " $(XFAIL_TESTS) " in \ m2m-aligner-1.2/tclap-1.2.1/tests/Makefile.in-350- *$$ws$$tst$$ws*) \ m2m-aligner-1.2/tclap-1.2.1/tests/Makefile.in:351: xpass=`expr $$xpass + 1`; \ m2m-aligner-1.2/tclap-1.2.1/tests/Makefile.in:352: failed=`expr $$failed + 1`; \ m2m-aligner-1.2/tclap-1.2.1/tests/Makefile.in-353- echo "XPASS: $$tst"; \ ############################################## m2m-aligner-1.2/tclap-1.2.1/tests/Makefile.in-359- elif test $$? -ne 77; then \ m2m-aligner-1.2/tclap-1.2.1/tests/Makefile.in:360: all=`expr $$all + 1`; \ m2m-aligner-1.2/tclap-1.2.1/tests/Makefile.in-361- case " $(XFAIL_TESTS) " in \ m2m-aligner-1.2/tclap-1.2.1/tests/Makefile.in-362- *$$ws$$tst$$ws*) \ m2m-aligner-1.2/tclap-1.2.1/tests/Makefile.in:363: xfail=`expr $$xfail + 1`; \ m2m-aligner-1.2/tclap-1.2.1/tests/Makefile.in-364- echo "XFAIL: $$tst"; \ ############################################## m2m-aligner-1.2/tclap-1.2.1/tests/Makefile.in-366- *) \ m2m-aligner-1.2/tclap-1.2.1/tests/Makefile.in:367: failed=`expr $$failed + 1`; \ m2m-aligner-1.2/tclap-1.2.1/tests/Makefile.in-368- echo "FAIL: $$tst"; \ ############################################## m2m-aligner-1.2/tclap-1.2.1/tests/Makefile.in-371- else \ m2m-aligner-1.2/tclap-1.2.1/tests/Makefile.in:372: skip=`expr $$skip + 1`; \ m2m-aligner-1.2/tclap-1.2.1/tests/Makefile.in-373- echo "SKIP: $$tst"; \ ############################################## m2m-aligner-1.2/tclap-1.2.1/tests/Makefile.in-392- skipped="($$skip tests were not run)"; \ m2m-aligner-1.2/tclap-1.2.1/tests/Makefile.in:393: test `echo "$$skipped" | wc -c` -le `echo "$$banner" | wc -c` || \ m2m-aligner-1.2/tclap-1.2.1/tests/Makefile.in-394- dashes="$$skipped"; \ ############################################## m2m-aligner-1.2/tclap-1.2.1/tests/Makefile.in-398- report="Please report to $(PACKAGE_BUGREPORT)"; \ m2m-aligner-1.2/tclap-1.2.1/tests/Makefile.in:399: test `echo "$$report" | wc -c` -le `echo "$$banner" | wc -c` || \ m2m-aligner-1.2/tclap-1.2.1/tests/Makefile.in-400- dashes="$$report"; \ m2m-aligner-1.2/tclap-1.2.1/tests/Makefile.in-401- fi; \ m2m-aligner-1.2/tclap-1.2.1/tests/Makefile.in:402: dashes=`echo "$$dashes" | sed s/./=/g`; \ m2m-aligner-1.2/tclap-1.2.1/tests/Makefile.in-403- echo "$$dashes"; \ ############################################## m2m-aligner-1.2/tclap-1.2.1/tests/Makefile.in-411-distdir: $(DISTFILES) m2m-aligner-1.2/tclap-1.2.1/tests/Makefile.in:412: @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \ m2m-aligner-1.2/tclap-1.2.1/tests/Makefile.in:413: topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \ m2m-aligner-1.2/tclap-1.2.1/tests/Makefile.in-414- list='$(DISTFILES)'; \ ############################################## m2m-aligner-1.2/tclap-1.2.1/tests/Makefile.in-425- if test -d $$d/$$file; then \ m2m-aligner-1.2/tclap-1.2.1/tests/Makefile.in:426: dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \ m2m-aligner-1.2/tclap-1.2.1/tests/Makefile.in-427- if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \ ############################################## m2m-aligner-1.2/tclap-1.2.1/config/mkinstalldirs-12-do m2m-aligner-1.2/tclap-1.2.1/config/mkinstalldirs:13: set fnord `echo ":$file" | sed -ne 's/^:\//#/;s/^://;s/\// /g;s/^#/\//;p'` m2m-aligner-1.2/tclap-1.2.1/config/mkinstalldirs-14- shift ############################################## m2m-aligner-1.2/tclap-1.2.1/config/depcomp-33- m2m-aligner-1.2/tclap-1.2.1/config/depcomp:34:depfile=${depfile-`echo "$object" | sed 's,\([^/]*\)$,.deps/\1,;s/\.\([^.]*\)$/.P\1/'`} m2m-aligner-1.2/tclap-1.2.1/config/depcomp:35:tmpdepfile=${tmpdepfile-`echo "$depfile" | sed 's/\.\([^.]*\)$/.T\1/'`} m2m-aligner-1.2/tclap-1.2.1/config/depcomp-36- ############################################## m2m-aligner-1.2/tclap-1.2.1/config/depcomp-168- # $object doesn't have directory information. m2m-aligner-1.2/tclap-1.2.1/config/depcomp:169: stripped=`echo "$object" | sed -e 's,^.*/,,' -e 's/\(.*\)\..*$/\1/'` m2m-aligner-1.2/tclap-1.2.1/config/depcomp-170- tmpdepfile="$stripped.u" ############################################## m2m-aligner-1.2/tclap-1.2.1/config/depcomp-187- # Do two passes, one to just change these to m2m-aligner-1.2/tclap-1.2.1/config/depcomp:188: # `$object: dependent.h' and one to simply `dependent.h:'. m2m-aligner-1.2/tclap-1.2.1/config/depcomp-189- sed -e "s,^$outname:,$object :," < "$tmpdepfile" > "$depfile" ############################################## m2m-aligner-1.2/tclap-1.2.1/config/depcomp-207- tmpdepfile1="$object.d" m2m-aligner-1.2/tclap-1.2.1/config/depcomp:208: tmpdepfile2=`echo "$object" | sed -e 's/.o$/.d/'` m2m-aligner-1.2/tclap-1.2.1/config/depcomp-209- if test "$libtool" = yes; then ############################################## m2m-aligner-1.2/tclap-1.2.1/config/depcomp-305- done m2m-aligner-1.2/tclap-1.2.1/config/depcomp:306: obj_suffix="`echo $object | sed 's/^.*\././'`" m2m-aligner-1.2/tclap-1.2.1/config/depcomp-307- touch "$tmpdepfile" ############################################## m2m-aligner-1.2/tclap-1.2.1/config/Makefile.in-202-distdir: $(DISTFILES) m2m-aligner-1.2/tclap-1.2.1/config/Makefile.in:203: @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \ m2m-aligner-1.2/tclap-1.2.1/config/Makefile.in:204: topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \ m2m-aligner-1.2/tclap-1.2.1/config/Makefile.in-205- list='$(DISTFILES)'; \ ############################################## m2m-aligner-1.2/tclap-1.2.1/config/Makefile.in-216- if test -d $$d/$$file; then \ m2m-aligner-1.2/tclap-1.2.1/config/Makefile.in:217: dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \ m2m-aligner-1.2/tclap-1.2.1/config/Makefile.in-218- if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \ ############################################## m2m-aligner-1.2/tclap-1.2.1/config/missing-113- from any GNU archive site." m2m-aligner-1.2/tclap-1.2.1/config/missing:114: files=`sed -n 's/^[ ]*A[CM]_CONFIG_HEADER(\([^)]*\)).*/\1/p' ${configure_ac}` m2m-aligner-1.2/tclap-1.2.1/config/missing-115- test -z "$files" && files="config.h" ############################################## m2m-aligner-1.2/tclap-1.2.1/config/missing-148- *.y) m2m-aligner-1.2/tclap-1.2.1/config/missing:149: SRCFILE=`echo "$LASTARG" | sed 's/y$/c/'` m2m-aligner-1.2/tclap-1.2.1/config/missing-150- if [ -f "$SRCFILE" ]; then ############################################## m2m-aligner-1.2/tclap-1.2.1/config/missing-152- fi m2m-aligner-1.2/tclap-1.2.1/config/missing:153: SRCFILE=`echo "$LASTARG" | sed 's/y$/h/'` m2m-aligner-1.2/tclap-1.2.1/config/missing-154- if [ -f "$SRCFILE" ]; then ############################################## m2m-aligner-1.2/tclap-1.2.1/config/missing-178- *.l) m2m-aligner-1.2/tclap-1.2.1/config/missing:179: SRCFILE=`echo "$LASTARG" | sed 's/l$/c/'` m2m-aligner-1.2/tclap-1.2.1/config/missing-180- if [ -f "$SRCFILE" ]; then ############################################## m2m-aligner-1.2/tclap-1.2.1/config/missing-197- m2m-aligner-1.2/tclap-1.2.1/config/missing:198: file=`echo "$*" | sed -n 's/.*-o \([^ ]*\).*/\1/p'` m2m-aligner-1.2/tclap-1.2.1/config/missing-199- if test -z "$file"; then m2m-aligner-1.2/tclap-1.2.1/config/missing:200: file=`echo "$*" | sed -n 's/.*--output=\([^ ]*\).*/\1/p'` m2m-aligner-1.2/tclap-1.2.1/config/missing-201- fi ############################################## m2m-aligner-1.2/tclap-1.2.1/config/missing-223- the \`GNU make' package. Grab either from any GNU archive site." m2m-aligner-1.2/tclap-1.2.1/config/missing:224: file=`echo "$*" | sed -n 's/.*-o \([^ ]*\).*/\1/p'` m2m-aligner-1.2/tclap-1.2.1/config/missing-225- if test -z "$file"; then m2m-aligner-1.2/tclap-1.2.1/config/missing:226: file=`echo "$*" | sed 's/.* \([^ ]*\) *$/\1/'` m2m-aligner-1.2/tclap-1.2.1/config/missing:227: file=`sed -n '/^@setfilename/ { s/.* \([^ ]*\) *$/\1/; p; q; }' $file` m2m-aligner-1.2/tclap-1.2.1/config/missing-228- fi ############################################## m2m-aligner-1.2/tclap-1.2.1/config/missing-251- *o*) m2m-aligner-1.2/tclap-1.2.1/config/missing:252: firstarg=`echo "$firstarg" | sed s/o//` m2m-aligner-1.2/tclap-1.2.1/config/missing-253- tar "$firstarg" ${1+"$@"} && exit 0 ############################################## m2m-aligner-1.2/tclap-1.2.1/config/missing-257- *h*) m2m-aligner-1.2/tclap-1.2.1/config/missing:258: firstarg=`echo "$firstarg" | sed s/h//` m2m-aligner-1.2/tclap-1.2.1/config/missing-259- tar "$firstarg" ${1+"$@"} && exit 0 ############################################## m2m-aligner-1.2/tclap-1.2.1/config/install-sh-85- m2m-aligner-1.2/tclap-1.2.1/config/install-sh:86: -t=*) transformarg=`echo $1 | sed 's/-t=//'` m2m-aligner-1.2/tclap-1.2.1/config/install-sh-87- shift ############################################## m2m-aligner-1.2/tclap-1.2.1/config/install-sh-89- m2m-aligner-1.2/tclap-1.2.1/config/install-sh:90: -b=*) transformbasename=`echo $1 | sed 's/-b=//'` m2m-aligner-1.2/tclap-1.2.1/config/install-sh-91- shift ############################################## m2m-aligner-1.2/tclap-1.2.1/config/install-sh-151- then m2m-aligner-1.2/tclap-1.2.1/config/install-sh:152: dst="$dst"/`basename $src` m2m-aligner-1.2/tclap-1.2.1/config/install-sh-153- else ############################################## m2m-aligner-1.2/tclap-1.2.1/config/install-sh-158-## this sed command emulates the dirname command m2m-aligner-1.2/tclap-1.2.1/config/install-sh:159:dstdir=`echo $dst | sed -e 's,[^/]*$,,;s,/$,,;s,^$,.,'` m2m-aligner-1.2/tclap-1.2.1/config/install-sh-160- ############################################## m2m-aligner-1.2/tclap-1.2.1/config/install-sh-172-IFS='%' m2m-aligner-1.2/tclap-1.2.1/config/install-sh:173:set - `echo ${dstdir} | sed -e 's@/@%@g' -e 's@^%@/@'` m2m-aligner-1.2/tclap-1.2.1/config/install-sh-174-IFS="${oIFS}" ############################################## m2m-aligner-1.2/tclap-1.2.1/config/install-sh-206- then m2m-aligner-1.2/tclap-1.2.1/config/install-sh:207: dstfile=`basename $dst` m2m-aligner-1.2/tclap-1.2.1/config/install-sh-208- else ############################################## m2m-aligner-1.2/tclap-1.2.1/config/install-sh-216- then m2m-aligner-1.2/tclap-1.2.1/config/install-sh:217: dstfile=`basename $dst` m2m-aligner-1.2/tclap-1.2.1/config/install-sh-218- else ############################################## m2m-aligner-1.2/tclap-1.2.1/examples/Makefile.in-392-.cpp.obj: m2m-aligner-1.2/tclap-1.2.1/examples/Makefile.in:393:@am__fastdepCXX_TRUE@ $(CXXCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'` m2m-aligner-1.2/tclap-1.2.1/examples/Makefile.in-394-@am__fastdepCXX_TRUE@ mv -f $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po ############################################## m2m-aligner-1.2/tclap-1.2.1/examples/Makefile.in-396-@AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@ m2m-aligner-1.2/tclap-1.2.1/examples/Makefile.in:397:@am__fastdepCXX_FALSE@ $(CXXCOMPILE) -c -o $@ `$(CYGPATH_W) '$<'` m2m-aligner-1.2/tclap-1.2.1/examples/Makefile.in-398- ############################################## m2m-aligner-1.2/tclap-1.2.1/examples/Makefile.in-439-GTAGS: m2m-aligner-1.2/tclap-1.2.1/examples/Makefile.in:440: here=`$(am__cd) $(top_builddir) && pwd` \ m2m-aligner-1.2/tclap-1.2.1/examples/Makefile.in-441- && cd $(top_srcdir) \ ############################################## m2m-aligner-1.2/tclap-1.2.1/examples/Makefile.in-447-distdir: $(DISTFILES) m2m-aligner-1.2/tclap-1.2.1/examples/Makefile.in:448: @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \ m2m-aligner-1.2/tclap-1.2.1/examples/Makefile.in:449: topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \ m2m-aligner-1.2/tclap-1.2.1/examples/Makefile.in-450- list='$(DISTFILES)'; \ ############################################## m2m-aligner-1.2/tclap-1.2.1/examples/Makefile.in-461- if test -d $$d/$$file; then \ m2m-aligner-1.2/tclap-1.2.1/examples/Makefile.in:462: dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \ m2m-aligner-1.2/tclap-1.2.1/examples/Makefile.in-463- if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \ ############################################## m2m-aligner-1.2/tclap-1.2.1/docs/Makefile.in-50-DIST_SOURCES = m2m-aligner-1.2/tclap-1.2.1/docs/Makefile.in:51:am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`; m2m-aligner-1.2/tclap-1.2.1/docs/Makefile.in-52-am__vpath_adj = case $$p in \ m2m-aligner-1.2/tclap-1.2.1/docs/Makefile.in:53: $(srcdir)/*) f=`echo "$$p" | sed "s|^$$srcdirstrip/||"`;; \ m2m-aligner-1.2/tclap-1.2.1/docs/Makefile.in-54- *) f=$$p;; \ m2m-aligner-1.2/tclap-1.2.1/docs/Makefile.in-55- esac; m2m-aligner-1.2/tclap-1.2.1/docs/Makefile.in:56:am__strip_dir = `echo $$p | sed -e 's|^.*/||'`; m2m-aligner-1.2/tclap-1.2.1/docs/Makefile.in-57-am__installdirs = "$(DESTDIR)$(docdir)" ############################################## m2m-aligner-1.2/tclap-1.2.1/docs/Makefile.in-210-distdir: $(DISTFILES) m2m-aligner-1.2/tclap-1.2.1/docs/Makefile.in:211: @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \ m2m-aligner-1.2/tclap-1.2.1/docs/Makefile.in:212: topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \ m2m-aligner-1.2/tclap-1.2.1/docs/Makefile.in-213- list='$(DISTFILES)'; \ ############################################## m2m-aligner-1.2/tclap-1.2.1/docs/Makefile.in-224- if test -d $$d/$$file; then \ m2m-aligner-1.2/tclap-1.2.1/docs/Makefile.in:225: dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \ m2m-aligner-1.2/tclap-1.2.1/docs/Makefile.in-226- if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \ ############################################## m2m-aligner-1.2/tclap-1.2.1/configure-107-do m2m-aligner-1.2/tclap-1.2.1/configure:108: if (set +x; test -z "`(eval $as_var=C; export $as_var) 2>&1`"); then m2m-aligner-1.2/tclap-1.2.1/configure-109- eval $as_var=C; export $as_var ############################################## m2m-aligner-1.2/tclap-1.2.1/configure-215- test \"x\$as_lineno_1\" != \"x\$as_lineno_2\" && m2m-aligner-1.2/tclap-1.2.1/configure:216: test \"x\`expr \$as_lineno_1 + 1\`\" = \"x\$as_lineno_2\") || { (exit 1); exit 1; } m2m-aligner-1.2/tclap-1.2.1/configure-217-") 2> /dev/null; then ############################################## m2m-aligner-1.2/tclap-1.2.1/configure-330- test "x$as_lineno_1" != "x$as_lineno_2" && m2m-aligner-1.2/tclap-1.2.1/configure:331: test "x`expr $as_lineno_1 + 1`" = "x$as_lineno_2") || { (exit 1); exit 1; } m2m-aligner-1.2/tclap-1.2.1/configure-332- ############################################## m2m-aligner-1.2/tclap-1.2.1/configure-425- test "x$as_lineno_1" != "x$as_lineno_2" && m2m-aligner-1.2/tclap-1.2.1/configure:426: test "x`expr $as_lineno_1 + 1`" = "x$as_lineno_2" || { m2m-aligner-1.2/tclap-1.2.1/configure-427- ############################################## m2m-aligner-1.2/tclap-1.2.1/configure-536- esac; m2m-aligner-1.2/tclap-1.2.1/configure:537: case `ls -ld'$as_ls_L_option' "$1" 2>/dev/null` in m2m-aligner-1.2/tclap-1.2.1/configure-538- ???[sx]*):;;*)false;;esac;fi ############################################## m2m-aligner-1.2/tclap-1.2.1/configure-775- case $ac_option in m2m-aligner-1.2/tclap-1.2.1/configure:776: *=*) ac_optarg=`expr "X$ac_option" : '[^=]*=\(.*\)'` ;; m2m-aligner-1.2/tclap-1.2.1/configure-777- *) ac_optarg=yes ;; ############################################## m2m-aligner-1.2/tclap-1.2.1/configure-818- -disable-* | --disable-*) m2m-aligner-1.2/tclap-1.2.1/configure:819: ac_feature=`expr "x$ac_option" : 'x-*disable-\(.*\)'` m2m-aligner-1.2/tclap-1.2.1/configure-820- # Reject names that are not valid shell variable names. ############################################## m2m-aligner-1.2/tclap-1.2.1/configure-823- { (exit 1); exit 1; }; } m2m-aligner-1.2/tclap-1.2.1/configure:824: ac_feature=`echo $ac_feature | sed 's/[-.]/_/g'` m2m-aligner-1.2/tclap-1.2.1/configure-825- eval enable_$ac_feature=no ;; ############################################## m2m-aligner-1.2/tclap-1.2.1/configure-837- -enable-* | --enable-*) m2m-aligner-1.2/tclap-1.2.1/configure:838: ac_feature=`expr "x$ac_option" : 'x-*enable-\([^=]*\)'` m2m-aligner-1.2/tclap-1.2.1/configure-839- # Reject names that are not valid shell variable names. ############################################## m2m-aligner-1.2/tclap-1.2.1/configure-842- { (exit 1); exit 1; }; } m2m-aligner-1.2/tclap-1.2.1/configure:843: ac_feature=`echo $ac_feature | sed 's/[-.]/_/g'` m2m-aligner-1.2/tclap-1.2.1/configure-844- eval enable_$ac_feature=\$ac_optarg ;; ############################################## m2m-aligner-1.2/tclap-1.2.1/configure-1034- -with-* | --with-*) m2m-aligner-1.2/tclap-1.2.1/configure:1035: ac_package=`expr "x$ac_option" : 'x-*with-\([^=]*\)'` m2m-aligner-1.2/tclap-1.2.1/configure-1036- # Reject names that are not valid shell variable names. ############################################## m2m-aligner-1.2/tclap-1.2.1/configure-1039- { (exit 1); exit 1; }; } m2m-aligner-1.2/tclap-1.2.1/configure:1040: ac_package=`echo $ac_package | sed 's/[-.]/_/g'` m2m-aligner-1.2/tclap-1.2.1/configure-1041- eval with_$ac_package=\$ac_optarg ;; ############################################## m2m-aligner-1.2/tclap-1.2.1/configure-1043- -without-* | --without-*) m2m-aligner-1.2/tclap-1.2.1/configure:1044: ac_package=`expr "x$ac_option" : 'x-*without-\(.*\)'` m2m-aligner-1.2/tclap-1.2.1/configure-1045- # Reject names that are not valid shell variable names. ############################################## m2m-aligner-1.2/tclap-1.2.1/configure-1048- { (exit 1); exit 1; }; } m2m-aligner-1.2/tclap-1.2.1/configure:1049: ac_package=`echo $ac_package | sed 's/[-.]/_/g'` m2m-aligner-1.2/tclap-1.2.1/configure-1050- eval with_$ac_package=no ;; ############################################## m2m-aligner-1.2/tclap-1.2.1/configure-1075- *=*) m2m-aligner-1.2/tclap-1.2.1/configure:1076: ac_envvar=`expr "x$ac_option" : 'x\([^=]*\)='` m2m-aligner-1.2/tclap-1.2.1/configure-1077- # Reject names that are not valid shell variable names. ############################################## m2m-aligner-1.2/tclap-1.2.1/configure-1095-if test -n "$ac_prev"; then m2m-aligner-1.2/tclap-1.2.1/configure:1096: ac_option=--`echo $ac_prev | sed 's/_/-/g'` m2m-aligner-1.2/tclap-1.2.1/configure-1097- { echo "$as_me: error: missing argument to $ac_option" >&2 ############################################## m2m-aligner-1.2/tclap-1.2.1/configure-1141-ac_ls_di=`ls -di .` && m2m-aligner-1.2/tclap-1.2.1/configure:1142:ac_pwd_ls_di=`cd "$ac_pwd" && ls -di .` || m2m-aligner-1.2/tclap-1.2.1/configure-1143- { echo "$as_me: error: Working directory cannot be determined" >&2 ############################################## m2m-aligner-1.2/tclap-1.2.1/configure-1201-case $srcdir in m2m-aligner-1.2/tclap-1.2.1/configure:1202:*/) srcdir=`expr "X$srcdir" : 'X\(.*[^/]\)' \| "X$srcdir" : 'X\(.*\)'`;; m2m-aligner-1.2/tclap-1.2.1/configure-1203-esac ############################################## m2m-aligner-1.2/tclap-1.2.1/configure-1244-By default, \`make install' will install all the files in m2m-aligner-1.2/tclap-1.2.1/configure:1245:\`$ac_default_prefix/bin', \`$ac_default_prefix/lib' etc. You can specify m2m-aligner-1.2/tclap-1.2.1/configure:1246:an installation prefix other than \`$ac_default_prefix' using \`--prefix', m2m-aligner-1.2/tclap-1.2.1/configure-1247-for instance \`--prefix=\$HOME'. ############################################## m2m-aligner-1.2/tclap-1.2.1/configure-1318-*) m2m-aligner-1.2/tclap-1.2.1/configure:1319: ac_dir_suffix=/`echo "$ac_dir" | sed 's,^\.[\\/],,'` m2m-aligner-1.2/tclap-1.2.1/configure-1320- # A ".." for each directory in $ac_dir_suffix. m2m-aligner-1.2/tclap-1.2.1/configure:1321: ac_top_builddir_sub=`echo "$ac_dir_suffix" | sed 's,/[^\\/]*,/..,g;s,/,,'` m2m-aligner-1.2/tclap-1.2.1/configure-1322- case $ac_top_builddir_sub in ############################################## m2m-aligner-1.2/tclap-1.2.1/configure-1451- *\'*) m2m-aligner-1.2/tclap-1.2.1/configure:1452: ac_arg=`echo "$ac_arg" | sed "s/'/'\\\\\\\\''/g"` ;; m2m-aligner-1.2/tclap-1.2.1/configure-1453- esac ############################################## m2m-aligner-1.2/tclap-1.2.1/configure-1537- case $ac_val in m2m-aligner-1.2/tclap-1.2.1/configure:1538: *\'\''*) ac_val=`echo "$ac_val" | sed "s/'\''/'\''\\\\\\\\'\'''\''/g"`;; m2m-aligner-1.2/tclap-1.2.1/configure-1539- esac ############################################## m2m-aligner-1.2/tclap-1.2.1/configure-1554- case $ac_val in m2m-aligner-1.2/tclap-1.2.1/configure:1555: *\'\''*) ac_val=`echo "$ac_val" | sed "s/'\''/'\''\\\\\\\\'\'''\''/g"`;; m2m-aligner-1.2/tclap-1.2.1/configure-1556- esac ############################################## m2m-aligner-1.2/tclap-1.2.1/configure-1662- set,) m2m-aligner-1.2/tclap-1.2.1/configure:1663: { echo "$as_me:$LINENO: error: \`$ac_var' was set to \`$ac_old_val' in the previous run" >&5 m2m-aligner-1.2/tclap-1.2.1/configure:1664:echo "$as_me: error: \`$ac_var' was set to \`$ac_old_val' in the previous run" >&2;} m2m-aligner-1.2/tclap-1.2.1/configure-1665- ac_cache_corrupted=: ;; ############################################## m2m-aligner-1.2/tclap-1.2.1/configure-1684- case $ac_new_val in m2m-aligner-1.2/tclap-1.2.1/configure:1685: *\'*) ac_arg=$ac_var=`echo "$ac_new_val" | sed "s/'/'\\\\\\\\''/g"` ;; m2m-aligner-1.2/tclap-1.2.1/configure-1686- *) ac_arg=$ac_var=$ac_new_val ;; ############################################## m2m-aligner-1.2/tclap-1.2.1/configure-1851-if ( m2m-aligner-1.2/tclap-1.2.1/configure:1852: set X `ls -Lt $srcdir/configure conftest.file 2> /dev/null` m2m-aligner-1.2/tclap-1.2.1/configure-1853- if test "$*" = "X"; then m2m-aligner-1.2/tclap-1.2.1/configure-1854- # -L didn't work. m2m-aligner-1.2/tclap-1.2.1/configure:1855: set X `ls -t $srcdir/configure conftest.file` m2m-aligner-1.2/tclap-1.2.1/configure-1856- fi ############################################## m2m-aligner-1.2/tclap-1.2.1/configure-1895-_ACEOF m2m-aligner-1.2/tclap-1.2.1/configure:1896:program_transform_name=`echo $program_transform_name | sed -f conftest.sed` m2m-aligner-1.2/tclap-1.2.1/configure-1897-rm -f conftest.sed ############################################## m2m-aligner-1.2/tclap-1.2.1/configure-1899-# expand $ac_aux_dir to an absolute path m2m-aligner-1.2/tclap-1.2.1/configure:1900:am_aux_dir=`cd $ac_aux_dir && pwd` m2m-aligner-1.2/tclap-1.2.1/configure-1901- ############################################## m2m-aligner-1.2/tclap-1.2.1/configure-1925- { test -f "$as_dir/$ac_prog$ac_exec_ext" && $as_test_x "$as_dir/$ac_prog$ac_exec_ext"; } || continue m2m-aligner-1.2/tclap-1.2.1/configure:1926: case `"$as_dir/$ac_prog$ac_exec_ext" --version 2>&1` in #( m2m-aligner-1.2/tclap-1.2.1/configure-1927- 'mkdir (GNU coreutils) '* | \ ############################################## m2m-aligner-1.2/tclap-1.2.1/configure-2003-echo $ECHO_N "checking whether ${MAKE-make} sets \$(MAKE)... $ECHO_C" >&6; } m2m-aligner-1.2/tclap-1.2.1/configure:2004:set x ${MAKE-make}; ac_make=`echo "$2" | sed 's/+/p/g; s/[^a-zA-Z0-9_]/_/g'` m2m-aligner-1.2/tclap-1.2.1/configure-2005-if { as_var=ac_cv_prog_make_${ac_make}_set; eval "test \"\${$as_var+set}\" = set"; }; then ############################################## m2m-aligner-1.2/tclap-1.2.1/configure-2013-# GNU make sometimes prints "make[1]: Entering...", which would confuse us. m2m-aligner-1.2/tclap-1.2.1/configure:2014:case `${MAKE-make} -f conftest.make 2>/dev/null` in m2m-aligner-1.2/tclap-1.2.1/configure-2015- *@@@%%%=?*=@@@%%%*) ############################################## m2m-aligner-1.2/tclap-1.2.1/configure-2040- m2m-aligner-1.2/tclap-1.2.1/configure:2041:if test "`cd $srcdir && pwd`" != "`pwd`"; then m2m-aligner-1.2/tclap-1.2.1/configure-2042- # Use -I$(srcdir) only when $(srcdir) != ., so that make's output ############################################## m2m-aligner-1.2/tclap-1.2.1/configure-2327-echo "$as_me:$LINENO: checking for C++ compiler version" >&5 m2m-aligner-1.2/tclap-1.2.1/configure:2328:ac_compiler=`set X $ac_compile; echo $2` m2m-aligner-1.2/tclap-1.2.1/configure-2329-{ (ac_try="$ac_compiler --version >&5" ############################################## m2m-aligner-1.2/tclap-1.2.1/configure-2381-echo $ECHO_N "checking for C++ compiler default output file name... $ECHO_C" >&6; } m2m-aligner-1.2/tclap-1.2.1/configure:2382:ac_link_default=`echo "$ac_link" | sed 's/ -o *conftest[^ ]*//'` m2m-aligner-1.2/tclap-1.2.1/configure-2383-# ############################################## m2m-aligner-1.2/tclap-1.2.1/configure-2429- then :; else m2m-aligner-1.2/tclap-1.2.1/configure:2430: ac_cv_exeext=`expr "$ac_file" : '[^.]*\(\..*\)'` m2m-aligner-1.2/tclap-1.2.1/configure-2431- fi ############################################## m2m-aligner-1.2/tclap-1.2.1/configure-2526- *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.map | *.inf | *.o | *.obj ) ;; m2m-aligner-1.2/tclap-1.2.1/configure:2527: *.* ) ac_cv_exeext=`expr "$ac_file" : '[^.]*\(\..*\)'` m2m-aligner-1.2/tclap-1.2.1/configure-2528- break;; ############################################## m2m-aligner-1.2/tclap-1.2.1/configure-2581- *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.map | *.inf ) ;; m2m-aligner-1.2/tclap-1.2.1/configure:2582: *) ac_cv_objext=`expr "$ac_file" : '.*\.\(.*\)'` m2m-aligner-1.2/tclap-1.2.1/configure-2583- break;; ############################################## m2m-aligner-1.2/tclap-1.2.1/configure-2656-echo "${ECHO_T}$ac_cv_cxx_compiler_gnu" >&6; } m2m-aligner-1.2/tclap-1.2.1/configure:2657:GXX=`test $ac_compiler_gnu = yes && echo yes` m2m-aligner-1.2/tclap-1.2.1/configure-2658-ac_test_CXXFLAGS=${CXXFLAGS+set} ############################################## m2m-aligner-1.2/tclap-1.2.1/configure-2840-# case it prints its new name instead of `make'. m2m-aligner-1.2/tclap-1.2.1/configure:2841:if test "`$am_make -s -f confmf 2> /dev/null | grep -v 'ing directory'`" = "done"; then m2m-aligner-1.2/tclap-1.2.1/configure-2842- am__include=include ############################################## m2m-aligner-1.2/tclap-1.2.1/configure-2848- echo '.include "confinc"' > confmf m2m-aligner-1.2/tclap-1.2.1/configure:2849: if test "`$am_make -s -f confmf 2> /dev/null`" = "done"; then m2m-aligner-1.2/tclap-1.2.1/configure-2850- am__include=.include ############################################## m2m-aligner-1.2/tclap-1.2.1/configure-2907- if test "$am_compiler_list" = ""; then m2m-aligner-1.2/tclap-1.2.1/configure:2908: am_compiler_list=`sed -n 's/^#*\([a-zA-Z0-9]*\))$/\1/p' < ./depcomp` m2m-aligner-1.2/tclap-1.2.1/configure-2909- fi ############################################## m2m-aligner-1.2/tclap-1.2.1/configure-3310- # Check for GNU $ac_path_GREP m2m-aligner-1.2/tclap-1.2.1/configure:3311:case `"$ac_path_GREP" --version 2>&1` in m2m-aligner-1.2/tclap-1.2.1/configure-3312-*GNU*) ############################################## m2m-aligner-1.2/tclap-1.2.1/configure-3324- diff "conftest.out" "conftest.nl" >/dev/null 2>&1 || break m2m-aligner-1.2/tclap-1.2.1/configure:3325: ac_count=`expr $ac_count + 1` m2m-aligner-1.2/tclap-1.2.1/configure-3326- if test $ac_count -gt ${ac_path_GREP_max-0}; then ############################################## m2m-aligner-1.2/tclap-1.2.1/configure-3392- # Check for GNU $ac_path_EGREP m2m-aligner-1.2/tclap-1.2.1/configure:3393:case `"$ac_path_EGREP" --version 2>&1` in m2m-aligner-1.2/tclap-1.2.1/configure-3394-*GNU*) ############################################## m2m-aligner-1.2/tclap-1.2.1/configure-3406- diff "conftest.out" "conftest.nl" >/dev/null 2>&1 || break m2m-aligner-1.2/tclap-1.2.1/configure:3407: ac_count=`expr $ac_count + 1` m2m-aligner-1.2/tclap-1.2.1/configure-3408- if test $ac_count -gt ${ac_path_EGREP_max-0}; then ############################################## m2m-aligner-1.2/tclap-1.2.1/configure-3635-do m2m-aligner-1.2/tclap-1.2.1/configure:3636:as_ac_Header=`echo "ac_cv_header_$ac_header" | $as_tr_sh` m2m-aligner-1.2/tclap-1.2.1/configure-3637-{ echo "$as_me:$LINENO: checking for $ac_header" >&5 ############################################## m2m-aligner-1.2/tclap-1.2.1/configure-3678-fi m2m-aligner-1.2/tclap-1.2.1/configure:3679:ac_res=`eval echo '${'$as_ac_Header'}'` m2m-aligner-1.2/tclap-1.2.1/configure-3680- { echo "$as_me:$LINENO: result: $ac_res" >&5 m2m-aligner-1.2/tclap-1.2.1/configure-3681-echo "${ECHO_T}$ac_res" >&6; } m2m-aligner-1.2/tclap-1.2.1/configure:3682:if test `eval echo '${'$as_ac_Header'}'` = yes; then m2m-aligner-1.2/tclap-1.2.1/configure-3683- cat >>confdefs.h <<_ACEOF m2m-aligner-1.2/tclap-1.2.1/configure:3684:#define `echo "HAVE_$ac_header" | $as_tr_cpp` 1 m2m-aligner-1.2/tclap-1.2.1/configure-3685-_ACEOF ############################################## m2m-aligner-1.2/tclap-1.2.1/configure-3702-do m2m-aligner-1.2/tclap-1.2.1/configure:3703:as_ac_Header=`echo "ac_cv_header_$ac_header" | $as_tr_sh` m2m-aligner-1.2/tclap-1.2.1/configure-3704-if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then ############################################## m2m-aligner-1.2/tclap-1.2.1/configure-3709-fi m2m-aligner-1.2/tclap-1.2.1/configure:3710:ac_res=`eval echo '${'$as_ac_Header'}'` m2m-aligner-1.2/tclap-1.2.1/configure-3711- { echo "$as_me:$LINENO: result: $ac_res" >&5 ############################################## m2m-aligner-1.2/tclap-1.2.1/configure-3825-fi m2m-aligner-1.2/tclap-1.2.1/configure:3826:ac_res=`eval echo '${'$as_ac_Header'}'` m2m-aligner-1.2/tclap-1.2.1/configure-3827- { echo "$as_me:$LINENO: result: $ac_res" >&5 ############################################## m2m-aligner-1.2/tclap-1.2.1/configure-3830-fi m2m-aligner-1.2/tclap-1.2.1/configure:3831:if test `eval echo '${'$as_ac_Header'}'` = yes; then m2m-aligner-1.2/tclap-1.2.1/configure-3832- cat >>confdefs.h <<_ACEOF m2m-aligner-1.2/tclap-1.2.1/configure:3833:#define `echo "HAVE_$ac_header" | $as_tr_cpp` 1 m2m-aligner-1.2/tclap-1.2.1/configure-3834-_ACEOF ############################################## m2m-aligner-1.2/tclap-1.2.1/configure-3917-do m2m-aligner-1.2/tclap-1.2.1/configure:3918:as_ac_Header=`echo "ac_cv_header_$ac_header" | $as_tr_sh` m2m-aligner-1.2/tclap-1.2.1/configure-3919-if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then ############################################## m2m-aligner-1.2/tclap-1.2.1/configure-3924-fi m2m-aligner-1.2/tclap-1.2.1/configure:3925:ac_res=`eval echo '${'$as_ac_Header'}'` m2m-aligner-1.2/tclap-1.2.1/configure-3926- { echo "$as_me:$LINENO: result: $ac_res" >&5 ############################################## m2m-aligner-1.2/tclap-1.2.1/configure-4040-fi m2m-aligner-1.2/tclap-1.2.1/configure:4041:ac_res=`eval echo '${'$as_ac_Header'}'` m2m-aligner-1.2/tclap-1.2.1/configure-4042- { echo "$as_me:$LINENO: result: $ac_res" >&5 ############################################## m2m-aligner-1.2/tclap-1.2.1/configure-4045-fi m2m-aligner-1.2/tclap-1.2.1/configure:4046:if test `eval echo '${'$as_ac_Header'}'` = yes; then m2m-aligner-1.2/tclap-1.2.1/configure-4047- cat >>confdefs.h <<_ACEOF m2m-aligner-1.2/tclap-1.2.1/configure:4048:#define `echo "HAVE_$ac_header" | $as_tr_cpp` 1 m2m-aligner-1.2/tclap-1.2.1/configure-4049-_ACEOF ############################################## m2m-aligner-1.2/tclap-1.2.1/configure-4655- ac_script='s/\$U\././;s/\.o$//;s/\.obj$//' m2m-aligner-1.2/tclap-1.2.1/configure:4656: ac_i=`echo "$ac_i" | sed "$ac_script"` m2m-aligner-1.2/tclap-1.2.1/configure-4657- # 2. 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