=========================================================== .___ __ __ _________________ __ __ __| _/|__|/ |_ / ___\_` __ \__ \ | | \/ __ | | \\_ __\ / /_/ > | \// __ \| | / /_/ | | || | \___ /|__| (____ /____/\____ | |__||__| /_____/ \/ \/ grep rough audit - static analysis tool v2.8 written by @Wireghoul =================================[justanotherhacker.com]=== mindthegap-2.2.2/.travis.yml-20-install: mindthegap-2.2.2/.travis.yml:21:- if [ "`echo $CXX`" == "g++" ] && [ "$TRAVIS_OS_NAME" == "linux" ]; then export CXX=g++-4.8; fi mindthegap-2.2.2/.travis.yml:22:- if [ "`echo $CXX`" == "clang++" ] && [ "$TRAVIS_OS_NAME" == "linux" ]; then export CXX=clang++-3.7; fi mindthegap-2.2.2/.travis.yml-23-matrix: ############################################## mindthegap-2.2.2/doc/MindTheGap_assembly.md-20- Although MindTheGap has been tested with contigs obtained with the assembler [Minia](https://github.com/GATB/minia), which uses similar assembly heuristics, contigs from any assembler may be used. mindthegap-2.2.2/doc/MindTheGap_assembly.md:21:- `-overlap`: the maximal potential sequence overlap between input contigs (default = $k$). MindTheGap extract from contig extremities seed and target kmers to perform local assembly between these kmers. To ensure a non-null gap-filled sequence even between contigs that overlap, seed and target kmers are extracted at `overlap` bp from the contig extremities. In case the overlap between your contigs exceeds the 'k' value chosen for *MindTheGap*, this can be specified using the `-overlap` option. mindthegap-2.2.2/doc/MindTheGap_assembly.md-22- ############################################## mindthegap-2.2.2/scripts/jenkins/tool-mindthegap-release-debian.sh-70- cd ${TOOL_GIT_HOME} mindthegap-2.2.2/scripts/jenkins/tool-mindthegap-release-debian.sh:71: DOES_TAG_EXIST=`git tag -l | grep "^${BRANCH_TO_BUILD}$"` mindthegap-2.2.2/scripts/jenkins/tool-mindthegap-release-debian.sh-72- if [ -z ${DOES_TAG_EXIST} ] ; then