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/ ___\_` __ \__ \ | | \/ __ | | \\_ __\
/ /_/ > | \// __ \| | / /_/ | | || |
\___ /|__| (____ /____/\____ | |__||__|
/_____/ \/ \/
grep rough audit - static analysis tool
v2.8 written by @Wireghoul
=================================[justanotherhacker.com]===
##############################################
mummer-3.23+dfsg/scripts/dnadiff.pl-141-
mummer-3.23+dfsg/scripts/dnadiff.pl:142: system($cmd) == 0 or die $err;
mummer-3.23+dfsg/scripts/dnadiff.pl-143- $OPT_DeltaFile = $OPT_Prefix . ".delta";
##############################################
mummer-3.23+dfsg/scripts/dnadiff.pl-155-
mummer-3.23+dfsg/scripts/dnadiff.pl:156: system($cmd1) == 0 or die $err;
mummer-3.23+dfsg/scripts/dnadiff.pl:157: system($cmd2) == 0 or die $err;
mummer-3.23+dfsg/scripts/dnadiff.pl-158-}
##############################################
mummer-3.23+dfsg/scripts/dnadiff.pl-168-
mummer-3.23+dfsg/scripts/dnadiff.pl:169: system($cmd) == 0 or die $err;
mummer-3.23+dfsg/scripts/dnadiff.pl-170-}
##############################################
mummer-3.23+dfsg/scripts/dnadiff.pl-181-
mummer-3.23+dfsg/scripts/dnadiff.pl:182: system($cmd1) == 0 or die $err;
mummer-3.23+dfsg/scripts/dnadiff.pl:183: system($cmd2) == 0 or die $err;
mummer-3.23+dfsg/scripts/dnadiff.pl-184-}
##############################################
mummer-3.23+dfsg/scripts/dnadiff.pl-195-
mummer-3.23+dfsg/scripts/dnadiff.pl:196: system($cmd1) == 0 or die $err;
mummer-3.23+dfsg/scripts/dnadiff.pl:197: system($cmd2) == 0 or die $err;
mummer-3.23+dfsg/scripts/dnadiff.pl-198-}
##############################################
mummer-3.23+dfsg/scripts/Foundation.pm-340- $command_str = $1;
mummer-3.23+dfsg/scripts/Foundation.pm:341: system($command_str);
mummer-3.23+dfsg/scripts/Foundation.pm-342- $exit_code = $? >> 8;
##############################################
mummer-3.23+dfsg/scripts/mapview.pl-877-
mummer-3.23+dfsg/scripts/mapview.pl:878: $status =system($comand);
mummer-3.23+dfsg/scripts/mapview.pl-879- print E "ERROR 1: fig2dev !\n" unless $status == 0;
mummer-3.23+dfsg/scripts/mapview.pl-880-
mummer-3.23+dfsg/scripts/mapview.pl:881: $status =system("rm $procfile".$nrf.".fig");
mummer-3.23+dfsg/scripts/mapview.pl-882-
##############################################
mummer-3.23+dfsg/scripts/mapview.pl-934- $command="sort -n -k 1 $tmpfile >> $tmpfile2";
mummer-3.23+dfsg/scripts/mapview.pl:935: $status =system($command);
mummer-3.23+dfsg/scripts/mapview.pl:936: system("rm $tmpfile");
mummer-3.23+dfsg/scripts/mapview.pl-937- close(M);
##############################################
mummer-3.23+dfsg/scripts/mummerplot.pl-252- print STDERR "Writing filtered delta file $OPT_Dfile\n";
mummer-3.23+dfsg/scripts/mummerplot.pl:253: system ("$BIN_DIR/delta-filter -r -q $OPT_Mfile > $OPT_Dfile")
mummer-3.23+dfsg/scripts/mummerplot.pl-254- and die "ERROR: Could not run delta-filter, $!\n";
##############################################
mummer-3.23+dfsg/scripts/mummerplot.pl-1337-
mummer-3.23+dfsg/scripts/mummerplot.pl:1338: system ($cmd)
mummer-3.23+dfsg/scripts/mummerplot.pl-1339- and print STDERR "WARNING: Unable to run '$cmd', $!\n";
##############################################
mummer-3.23+dfsg/src/kurtz/streesrc/access.c-329- }
mummer-3.23+dfsg/src/kurtz/streesrc/access.c:330: CHECKADDR(stree,llptr->nextnode);
mummer-3.23+dfsg/src/kurtz/streesrc/access.c-331- }
##############################################
mummer-3.23+dfsg/src/kurtz/streesrc/access.c-357- llptr->nextnode.toleaf = loc->nextnode.toleaf;
mummer-3.23+dfsg/src/kurtz/streesrc/access.c:358: CHECKADDR(stree,llptr->nextnode);
mummer-3.23+dfsg/src/kurtz/streesrc/access.c-359- return;
##############################################
mummer-3.23+dfsg/src/kurtz/streesrc/access.c-376- llptr->nextnode.toleaf = True;
mummer-3.23+dfsg/src/kurtz/streesrc/access.c:377: CHECKADDR(stree,llptr->nextnode);
mummer-3.23+dfsg/src/kurtz/streesrc/access.c-378- }
##############################################
mummer-3.23+dfsg/src/kurtz/streesrc/access.c-388- llptr->nextnode.address = succptr;
mummer-3.23+dfsg/src/kurtz/streesrc/access.c:389: CHECKADDR(stree,llptr->nextnode);
mummer-3.23+dfsg/src/kurtz/streesrc/access.c-390- succ = GETBROTHER(succptr);
##############################################
mummer-3.23+dfsg/src/kurtz/streesrc/construct.c-464- stree->rootchildren[(Uint) *(stree->headstart)]
mummer-3.23+dfsg/src/kurtz/streesrc/construct.c:465: = MAKEBRANCHADDR(stree->nextfreebranchnum);
mummer-3.23+dfsg/src/kurtz/streesrc/construct.c-466- *(stree->nextfreebranch+1) = VALIDINIT;
##############################################
mummer-3.23+dfsg/src/kurtz/streesrc/construct.c-472- {
mummer-3.23+dfsg/src/kurtz/streesrc/construct.c:473: SETCHILD(stree->headnode,MAKEBRANCHADDR(stree->nextfreebranchnum));
mummer-3.23+dfsg/src/kurtz/streesrc/construct.c-474- } else
##############################################
mummer-3.23+dfsg/src/kurtz/streesrc/construct.c-478- ptr = stree->leaftab + GETLEAFINDEX(stree->insertprev);
mummer-3.23+dfsg/src/kurtz/streesrc/construct.c:479: SETLEAFBROTHER(ptr,MAKEBRANCHADDR(stree->nextfreebranchnum));
mummer-3.23+dfsg/src/kurtz/streesrc/construct.c-480- } else // new branch = brother of branching node
##############################################
mummer-3.23+dfsg/src/kurtz/streesrc/construct.c-482- SETBROTHER(stree->branchtab + GETBRANCHINDEX(stree->insertprev),
mummer-3.23+dfsg/src/kurtz/streesrc/construct.c:483: MAKEBRANCHADDR(stree->nextfreebranchnum));
mummer-3.23+dfsg/src/kurtz/streesrc/construct.c-484- }
##############################################
mummer-3.23+dfsg/src/kurtz/streesrc/construct.c-526- SETNILBIT;
mummer-3.23+dfsg/src/kurtz/streesrc/construct.c:527: RECALLSUCC(MAKEBRANCHADDR(stree->nextfreebranchnum)); // node on succ. path
mummer-3.23+dfsg/src/kurtz/streesrc/construct.c-528- stree->currentdepth = stree->headnodedepth + (Uint) (stree->headend-stree->headstart+1);
##############################################
mummer-3.23+dfsg/src/kurtz/streesrc/streehuge.h-85-#define GETCHAINEND(C,B,D) C = (B) + MULTBYSMALLINTS(D)
mummer-3.23+dfsg/src/kurtz/streesrc/streehuge.h:86:#define MAKEBRANCHADDR(V) (V)
mummer-3.23+dfsg/src/kurtz/streesrc/streehuge.h-87-#define SETBRANCHNODEOFFSET /* nothing */
##############################################
mummer-3.23+dfsg/src/kurtz/streesrc/streelarge.h-107-#define GETCHAINEND(C,B,D) C = (B) + (MULTBYSMALLINTS(D))
mummer-3.23+dfsg/src/kurtz/streesrc/streelarge.h:108:#define MAKEBRANCHADDR(V) (V)
mummer-3.23+dfsg/src/kurtz/streesrc/streelarge.h-109-#define SETBRANCHNODEOFFSET /* nothing */
##############################################
mummer-3.23+dfsg/src/kurtz/streesrc/streemac.h-65-#ifdef DEBUG
mummer-3.23+dfsg/src/kurtz/streesrc/streemac.h:66:#define CHECKADDR(ST,A)\
mummer-3.23+dfsg/src/kurtz/streesrc/streemac.h-67- if((A).toleaf)\
##############################################
mummer-3.23+dfsg/src/kurtz/streesrc/streemac.h-86-#else
mummer-3.23+dfsg/src/kurtz/streesrc/streemac.h:87:#define CHECKADDR(ST,A) /* Nothing */
mummer-3.23+dfsg/src/kurtz/streesrc/streemac.h-88-#endif
##############################################
mummer-3.23+dfsg/src/kurtz/streesrc/streesmall.h-51-#define MAKELARGELEAF(V) (V)
mummer-3.23+dfsg/src/kurtz/streesrc/streesmall.h:52:#define MAKEBRANCHADDR(V) ((V) + stree->branchnodeoffset)
mummer-3.23+dfsg/src/kurtz/streesrc/streesmall.h-53-#define GETLEAFINDEX(V) (V)
##############################################
mummer-3.23+dfsg/debian/sh-replacement-scripts/exact-tandems-6-usage () {
mummer-3.23+dfsg/debian/sh-replacement-scripts/exact-tandems:7: echo "Usage: `basename $0` <file> <min-match-len>"
mummer-3.23+dfsg/debian/sh-replacement-scripts/exact-tandems-8- return 67 # EX_USAGE
##############################################
mummer-3.23+dfsg/debian/sh-replacement-scripts/run-mummer1-8-usage () {
mummer-3.23+dfsg/debian/sh-replacement-scripts/run-mummer1:9: echo "Usage: `basename $0` <fasta reference> <fasta query> <prefix> [-r]"
mummer-3.23+dfsg/debian/sh-replacement-scripts/run-mummer1-10- return 67 # EX_USAGE
##############################################
mummer-3.23+dfsg/debian/sh-replacement-scripts/run-mummer3-12-usage () {
mummer-3.23+dfsg/debian/sh-replacement-scripts/run-mummer3:13: echo "Usage: `basename $0` <fasta reference> <multi-fasta query> <prefix>"
mummer-3.23+dfsg/debian/sh-replacement-scripts/run-mummer3-14- return 67 # EX_USAGE
##############################################
mummer-3.23+dfsg/.pc/hardening.patch/Makefile-106- cp $(FLATS) $(DISTDIR)
mummer-3.23+dfsg/.pc/hardening.patch/Makefile:107: rm -rf `find $(DISTDIR) -name CVS`
mummer-3.23+dfsg/.pc/hardening.patch/Makefile-108- tar -cvf $(DISTDIR).tar $(DISTDIR)
##############################################
mummer-3.23+dfsg/.pc/mummerplot.patch/scripts/mummerplot.pl-252- print STDERR "Writing filtered delta file $OPT_Dfile\n";
mummer-3.23+dfsg/.pc/mummerplot.patch/scripts/mummerplot.pl:253: system ("$BIN_DIR/delta-filter -r -q $OPT_Mfile > $OPT_Dfile")
mummer-3.23+dfsg/.pc/mummerplot.patch/scripts/mummerplot.pl-254- and die "ERROR: Could not run delta-filter, $!\n";
##############################################
mummer-3.23+dfsg/.pc/mummerplot.patch/scripts/mummerplot.pl-1337-
mummer-3.23+dfsg/.pc/mummerplot.patch/scripts/mummerplot.pl:1338: system ($cmd)
mummer-3.23+dfsg/.pc/mummerplot.patch/scripts/mummerplot.pl-1339- and print STDERR "WARNING: Unable to run '$cmd', $!\n";
##############################################
mummer-3.23+dfsg/.pc/remove-csh-dependency.patch/Makefile-106- cp $(FLATS) $(DISTDIR)
mummer-3.23+dfsg/.pc/remove-csh-dependency.patch/Makefile:107: rm -rf `find $(DISTDIR) -name CVS`
mummer-3.23+dfsg/.pc/remove-csh-dependency.patch/Makefile-108- tar -cvf $(DISTDIR).tar $(DISTDIR)
##############################################
mummer-3.23+dfsg/Makefile-102- cp $(FLATS) $(DISTDIR)
mummer-3.23+dfsg/Makefile:103: rm -rf `find $(DISTDIR) -name CVS`
mummer-3.23+dfsg/Makefile-104- tar -cvf $(DISTDIR).tar $(DISTDIR)