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              grep rough audit - static analysis tool
                  v2.8 written by @Wireghoul
=================================[justanotherhacker.com]===
nanopolish-0.13.2/DEVELOPERS.md-6-2. Check out a new branch via `git branch nanopolish-bioconda-bump && git checkout nanopolish-bioconda-bump`.
nanopolish-0.13.2/DEVELOPERS.md:7:3. Update the `bioconda-recipes/recipes/nanopolish/meta.yaml` file by editing the version tag and the SHA hash; the SHA256 hash can be obtained by running `sha256sum nanopolish-v{$VERSION}.tar.gz` on the command line (where `{VERSION}` is the new, updated version tag); commit the changes to the `meta.yaml` file via, e.g., `git commit -a -m 'bump nanopolish to version {VERSION}'`.
nanopolish-0.13.2/DEVELOPERS.md-8-4. Push the changes to your forked repo via `git push origin nanopolish-bioconda-bump`; then, make a pull request to merge the updates into the master branch of the upstream `bioconda-recipes` repository.
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nanopolish-0.13.2/scripts/polya_training/dump_signal.py-5-A verbose polya output file can be generated with:
nanopolish-0.13.2/scripts/polya_training/dump_signal.py:6:``$ nanopolish polya -v --reads={...} --bam={...} --genome={...} > polya.verbose.tsv``
nanopolish-0.13.2/scripts/polya_training/dump_signal.py-7-
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nanopolish-0.13.2/scripts/import_ont_models_from_dir.sh-4-
nanopolish-0.13.2/scripts/import_ont_models_from_dir.sh:5:for i in `ls $DIR`; do
nanopolish-0.13.2/scripts/import_ont_models_from_dir.sh-6-    echo "Processing", $DIR/$i
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nanopolish-0.13.2/debian/patches/fix_remaining_python_interpreters.patch-19- 
nanopolish-0.13.2/debian/patches/fix_remaining_python_interpreters.patch:20: for i in `ls $DIR`; do
nanopolish-0.13.2/debian/patches/fix_remaining_python_interpreters.patch-21-     echo "Processing", $DIR/$i
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nanopolish-0.13.2/.pc/reproducible.patch/Makefile-114-	if [ ! -e hdf5-$(HDF5_VERSION).tar.gz ]; then \
nanopolish-0.13.2/.pc/reproducible.patch/Makefile:115:		version_major_minor=`echo "$(HDF5_VERSION)" | sed -E 's/\.[0-9]+$$//'`; \
nanopolish-0.13.2/.pc/reproducible.patch/Makefile-116-		wget https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-$${version_major_minor}/hdf5-$(HDF5_VERSION)/src/hdf5-$(HDF5_VERSION).tar.gz; \
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nanopolish-0.13.2/.pc/fix_remaining_python_interpreters.patch/scripts/import_ont_models_from_dir.sh-4-
nanopolish-0.13.2/.pc/fix_remaining_python_interpreters.patch/scripts/import_ont_models_from_dir.sh:5:for i in `ls $DIR`; do
nanopolish-0.13.2/.pc/fix_remaining_python_interpreters.patch/scripts/import_ont_models_from_dir.sh-6-    echo "Processing", $DIR/$i
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nanopolish-0.13.2/.pc/staticMinimap2Library.patch/Makefile-114-	if [ ! -e hdf5-$(HDF5_VERSION).tar.gz ]; then \
nanopolish-0.13.2/.pc/staticMinimap2Library.patch/Makefile:115:		version_major_minor=`echo "$(HDF5_VERSION)" | sed -E 's/\.[0-9]+$$//'`; \
nanopolish-0.13.2/.pc/staticMinimap2Library.patch/Makefile-116-		wget https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-$${version_major_minor}/hdf5-$(HDF5_VERSION)/src/hdf5-$(HDF5_VERSION).tar.gz; \
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nanopolish-0.13.2/Makefile-117-	if [ ! -e hdf5-$(HDF5_VERSION).tar.gz ]; then \
nanopolish-0.13.2/Makefile:118:		version_major_minor=`echo "$(HDF5_VERSION)" | sed -E 's/\.[0-9]+$$//'`; \
nanopolish-0.13.2/Makefile-119-		wget https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-$${version_major_minor}/hdf5-$(HDF5_VERSION)/src/hdf5-$(HDF5_VERSION).tar.gz; \