=========================================================== .___ __ __ _________________ __ __ __| _/|__|/ |_ / ___\_` __ \__ \ | | \/ __ | | \\_ __\ / /_/ > | \// __ \| | / /_/ | | || | \___ /|__| (____ /____/\____ | |__||__| /_____/ \/ \/ grep rough audit - static analysis tool v2.8 written by @Wireghoul =================================[justanotherhacker.com]=== picard-tools-2.23.8+dfsg/docs/fingerprinting/main.tex-37-\] picard-tools-2.23.8+dfsg/docs/fingerprinting/main.tex:38:where $L_i = p(x,y \, | \, s=i)$ and $S$ is the prior probability of a swap. picard-tools-2.23.8+dfsg/docs/fingerprinting/main.tex-39- ############################################## picard-tools-2.23.8+dfsg/gradlew-29-while [ -h "$PRG" ] ; do picard-tools-2.23.8+dfsg/gradlew:30: ls=`ls -ld "$PRG"` picard-tools-2.23.8+dfsg/gradlew:31: link=`expr "$ls" : '.*-> \(.*\)$'` picard-tools-2.23.8+dfsg/gradlew-32- if expr "$link" : '/.*' > /dev/null; then ############################################## picard-tools-2.23.8+dfsg/gradlew-34- else picard-tools-2.23.8+dfsg/gradlew:35: PRG=`dirname "$PRG"`"/$link" picard-tools-2.23.8+dfsg/gradlew-36- fi ############################################## picard-tools-2.23.8+dfsg/gradlew-38-SAVED="`pwd`" picard-tools-2.23.8+dfsg/gradlew:39:cd "`dirname \"$PRG\"`/" >/dev/null picard-tools-2.23.8+dfsg/gradlew-40-APP_HOME="`pwd -P`" ############################################## picard-tools-2.23.8+dfsg/gradlew-43-APP_NAME="Gradle" picard-tools-2.23.8+dfsg/gradlew:44:APP_BASE_NAME=`basename "$0"` picard-tools-2.23.8+dfsg/gradlew-45- ############################################## picard-tools-2.23.8+dfsg/gradlew-129-if $cygwin ; then picard-tools-2.23.8+dfsg/gradlew:130: APP_HOME=`cygpath --path --mixed "$APP_HOME"` picard-tools-2.23.8+dfsg/gradlew:131: CLASSPATH=`cygpath --path --mixed "$CLASSPATH"` picard-tools-2.23.8+dfsg/gradlew:132: JAVACMD=`cygpath --unix "$JAVACMD"` picard-tools-2.23.8+dfsg/gradlew-133- ############################################## picard-tools-2.23.8+dfsg/gradlew-148- for arg in "$@" ; do picard-tools-2.23.8+dfsg/gradlew:149: CHECK=`echo "$arg"|egrep -c "$OURCYGPATTERN" -` picard-tools-2.23.8+dfsg/gradlew:150: CHECK2=`echo "$arg"|egrep -c "^-"` ### Determine if an option picard-tools-2.23.8+dfsg/gradlew-151- picard-tools-2.23.8+dfsg/gradlew-152- if [ $CHECK -ne 0 ] && [ $CHECK2 -eq 0 ] ; then ### Added a condition picard-tools-2.23.8+dfsg/gradlew:153: eval `echo args$i`=`cygpath --path --ignore --mixed "$arg"` picard-tools-2.23.8+dfsg/gradlew-154- else picard-tools-2.23.8+dfsg/gradlew:155: eval `echo args$i`="\"$arg\"" picard-tools-2.23.8+dfsg/gradlew-156- fi ############################################## picard-tools-2.23.8+dfsg/src/main/resources/release_picard.sh-24-# picard-tools-2.23.8+dfsg/src/main/resources/release_picard.sh:25:# PROGNAME=`basename $0` picard-tools-2.23.8+dfsg/src/main/resources/release_picard.sh-26-# ############################################## picard-tools-2.23.8+dfsg/src/main/resources/release_picard.sh-175-# # Since releases are lexically sorted, need to filter in order to have 1.1xx be at the bottom. picard-tools-2.23.8+dfsg/src/main/resources/release_picard.sh:176:# PICARD_PREV_RELEASE_ID=`git ls-remote --tags | grep -v "{}$" | awk '{print $2}' | sed -e "s_.*/__g" | egrep '[.]\d\d\d' | tail -1` picard-tools-2.23.8+dfsg/src/main/resources/release_picard.sh-177-# ############################################## picard-tools-2.23.8+dfsg/src/main/resources/release_picard.sh-195-# # Since releases are lexically sorted, need to filter in order to have 1.1xx be at the bottom. picard-tools-2.23.8+dfsg/src/main/resources/release_picard.sh:196:# PICARD_PREV_RELEASE_ID=`git ls-remote --tags | grep -v "{}$" | awk '{print $2}' | sed -e "s_.*/__g" | egrep '[.]\d\d\d' | tail -1` picard-tools-2.23.8+dfsg/src/main/resources/release_picard.sh-197-# HTSJDK_PREV_RELEASE_ID=$(cd htsjdk; git ls-remote --tags | grep -v "{}$" | awk '{print $2}' | sed -e "s_.*/__g" | egrep '[.]\d\d\d' | tail -1)