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              grep rough audit - static analysis tool
                  v2.8 written by @Wireghoul
=================================[justanotherhacker.com]===
r-bioc-ebseq-1.30.0/inst/doc/EBSeq_Vignette.Rnw-28-by the number of constituent isoforms of the parent gene.
r-bioc-ebseq-1.30.0/inst/doc/EBSeq_Vignette.Rnw:29:An isoform of gene $g$ is assigned to the $I_g=k$ group, where $k=1,2,3$,
r-bioc-ebseq-1.30.0/inst/doc/EBSeq_Vignette.Rnw-30-if the total number of isoforms from gene $g$ is $k$ (the $I_g=3$ group contains
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r-bioc-ebseq-1.30.0/inst/doc/EBSeq_Vignette.Rnw-149-\end{equation}
r-bioc-ebseq-1.30.0/inst/doc/EBSeq_Vignette.Rnw:150:\noindent where $\sum_{k=1}^5 p_k = 1$. Thus, the posterior probability of
r-bioc-ebseq-1.30.0/inst/doc/EBSeq_Vignette.Rnw-151-isoform $g_i$ coming from pattern $K$ is readily obtained by:
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r-bioc-ebseq-1.30.0/vignettes/EBSeq_Vignette.Rnw-28-by the number of constituent isoforms of the parent gene.
r-bioc-ebseq-1.30.0/vignettes/EBSeq_Vignette.Rnw:29:An isoform of gene $g$ is assigned to the $I_g=k$ group, where $k=1,2,3$,
r-bioc-ebseq-1.30.0/vignettes/EBSeq_Vignette.Rnw-30-if the total number of isoforms from gene $g$ is $k$ (the $I_g=3$ group contains
##############################################
r-bioc-ebseq-1.30.0/vignettes/EBSeq_Vignette.Rnw-149-\end{equation}
r-bioc-ebseq-1.30.0/vignettes/EBSeq_Vignette.Rnw:150:\noindent where $\sum_{k=1}^5 p_k = 1$. Thus, the posterior probability of
r-bioc-ebseq-1.30.0/vignettes/EBSeq_Vignette.Rnw-151-isoform $g_i$ coming from pattern $K$ is readily obtained by:
##############################################
r-bioc-ebseq-1.30.0/debian/tests/run-unit-test-2-oname=ebseq
r-bioc-ebseq-1.30.0/debian/tests/run-unit-test:3:pkg=r-bioc-`echo $oname | tr '[A-Z]' '[a-z]'`
r-bioc-ebseq-1.30.0/debian/tests/run-unit-test-4-
r-bioc-ebseq-1.30.0/debian/tests/run-unit-test-5-if [ "$AUTOPKGTEST_TMP" = "" ] ; then
r-bioc-ebseq-1.30.0/debian/tests/run-unit-test:6:  AUTOPKGTEST_TMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
r-bioc-ebseq-1.30.0/debian/tests/run-unit-test-7-fi
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r-bioc-ebseq-1.30.0/debian/tests/run-unit-test-12-for rnw in `ls *.[rR]nw` ; do
r-bioc-ebseq-1.30.0/debian/tests/run-unit-test:13:rfile=`echo $rnw | sed 's/\.[rR]nw/.R/'`
r-bioc-ebseq-1.30.0/debian/tests/run-unit-test-14-R --no-save <<EOT