===========================================================
                                      .___ __  __   
          _________________  __ __  __| _/|__|/  |_ 
         / ___\_` __ \__  \ |  |  \/ __ | | \\_  __\
        / /_/  >  | \// __ \|  |  / /_/ | |  ||  |  
        \___  /|__|  (____  /____/\____ | |__||__|  
       /_____/            \/           \/           
              grep rough audit - static analysis tool
                  v2.8 written by @Wireghoul
=================================[justanotherhacker.com]===
sepp-4.3.10+dfsg/sepp-package/buildref/README.md-32-
sepp-4.3.10+dfsg/sepp-package/buildref/README.md:33:6. Optional: you can add taxonomic labels back to your reference tree if your original tree (`$t`) had those
sepp-4.3.10+dfsg/sepp-package/buildref/README.md-34-   ```
##############################################
sepp-4.3.10+dfsg/sepp-package/buildref/README.md-45-* your original alignment, 
sepp-4.3.10+dfsg/sepp-package/buildref/README.md:46:* your final tree (`reference-$alg-rooted.tre` or `reference-$alg-rooted-relabelled.tre` if you included the last step)
sepp-4.3.10+dfsg/sepp-package/buildref/README.md:47:* your final info file (`RAxML_info.$alg`)
##############################################
sepp-4.3.10+dfsg/sepp-package/buildref/root.sh-6-
sepp-4.3.10+dfsg/sepp-package/buildref/root.sh:7:nw_reroot $2 4480201 | nw_reroot - `cat $1|tr '\n' ' '` > $3
sepp-4.3.10+dfsg/sepp-package/buildref/root.sh-8-
##############################################
sepp-4.3.10+dfsg/sepp-package/run-sepp.sh-36-function cleanup {
sepp-4.3.10+dfsg/sepp-package/run-sepp.sh:37:  exitcode=`echo $?`
sepp-4.3.10+dfsg/sepp-package/run-sepp.sh-38-  if [ $exitcode != 0 ] && [ ! -z "$printDebug" ];
##############################################
sepp-4.3.10+dfsg/debian/patches/use_debian_packaged_guppy_from_pplacer.patch-13- if [ -z ${noTree+x} ]; then
sepp-4.3.10+dfsg/debian/patches/use_debian_packaged_guppy_from_pplacer.patch:14:-	gbin=$( dirname `grep -A1 "pplacer" $DIR/sepp/.sepp/main.config |grep path|sed -e "s/^path=//g"` )
sepp-4.3.10+dfsg/debian/patches/use_debian_packaged_guppy_from_pplacer.patch-15-+	gbin="/usr/bin/"
##############################################
sepp-4.3.10+dfsg/.pc/use_debian_packaged_guppy_from_pplacer.patch/sepp-package/run-sepp.sh-36-function cleanup {
sepp-4.3.10+dfsg/.pc/use_debian_packaged_guppy_from_pplacer.patch/sepp-package/run-sepp.sh:37:  exitcode=`echo $?`
sepp-4.3.10+dfsg/.pc/use_debian_packaged_guppy_from_pplacer.patch/sepp-package/run-sepp.sh-38-  if [ $exitcode != 0 ] && [ ! -z "$printDebug" ];
##############################################
sepp-4.3.10+dfsg/.pc/use_debian_packaged_guppy_from_pplacer.patch/sepp-package/run-sepp.sh-148-if [ -z ${noTree+x} ]; then
sepp-4.3.10+dfsg/.pc/use_debian_packaged_guppy_from_pplacer.patch/sepp-package/run-sepp.sh:149:	gbin=$( dirname `grep -A1 "pplacer" $DIR/sepp/.sepp/main.config |grep path|sed -e "s/^path=//g"` )
sepp-4.3.10+dfsg/.pc/use_debian_packaged_guppy_from_pplacer.patch/sepp-package/run-sepp.sh-150-