data/biobambam2-2.0.177+ds/ChangeLog:110: Explicitely ==> Explicitly
data/biobambam2-2.0.177+ds/ChangeLog:222: explicitely ==> explicitly
data/biobambam2-2.0.177+ds/ChangeLog:388: explicitely ==> explicitly
data/biobambam2-2.0.177+ds/src/biobambam2/DepthInterval.hpp:91: ba ==> by, be
data/biobambam2-2.0.177+ds/src/biobambam2/DepthInterval.hpp:95: ba ==> by, be
data/biobambam2-2.0.177+ds/src/biobambam2/DepthInterval.hpp:115: ba ==> by, be
data/biobambam2-2.0.177+ds/src/biobambam2/DepthInterval.hpp:119: ba ==> by, be
data/biobambam2-2.0.177+ds/src/biobambam2/KmerPoisson.cpp:28: occurences ==> occurrences
data/biobambam2-2.0.177+ds/src/biobambam2/KmerPoisson.hpp:29: Occurence ==> Occurrence
data/biobambam2-2.0.177+ds/src/biobambam2/KmerPoisson.hpp:31: frequences ==> frequencies
data/biobambam2-2.0.177+ds/src/biobambam2/KmerPoisson.hpp:40: occurences ==> occurrences
data/biobambam2-2.0.177+ds/src/biobambam2/RgInfo.hpp:30: FO ==> OF, FOR
data/biobambam2-2.0.177+ds/src/biobambam2/RgInfo.hpp:47: FO ==> OF, FOR
data/biobambam2-2.0.177+ds/src/biobambam2/RgInfo.hpp:71: FO ==> OF, FOR
data/biobambam2-2.0.177+ds/src/biobambam2/RgInfo.hpp:71: FO ==> OF, FOR
data/biobambam2-2.0.177+ds/src/programs/bamadapterfind.cpp:894: enque ==> enqueue
data/biobambam2-2.0.177+ds/src/programs/bamadapterfind.cpp:903: enque ==> enqueue
data/biobambam2-2.0.177+ds/src/programs/bamadapterfind.cpp:1016: enque ==> enqueue
data/biobambam2-2.0.177+ds/src/programs/bamadapterfind.cpp:1087: enque ==> enqueue
data/biobambam2-2.0.177+ds/src/programs/bamadapterfind.cpp:1109: enque ==> enqueue
data/biobambam2-2.0.177+ds/src/programs/bamalignfrac.cpp:257: regualr ==> regular
data/biobambam2-2.0.177+ds/src/programs/bamauxmerge2.cpp:1542: lenght ==> length
data/biobambam2-2.0.177+ds/src/programs/bamauxmerge2.cpp:2469: enque ==> enqueue
data/biobambam2-2.0.177+ds/src/programs/bamauxmerge2.cpp:2500: enque ==> enqueue
data/biobambam2-2.0.177+ds/src/programs/bamauxmerge2.cpp:3102: enque ==> enqueue
data/biobambam2-2.0.177+ds/src/programs/bamauxmerge2.cpp:3249: enque ==> enqueue
data/biobambam2-2.0.177+ds/src/programs/bamauxmerge2.cpp:3255: enque ==> enqueue
data/biobambam2-2.0.177+ds/src/programs/bamauxmerge2.cpp:3290: enque ==> enqueue
data/biobambam2-2.0.177+ds/src/programs/bamauxmerge2.cpp:3604: FO ==> OF, FOR
data/biobambam2-2.0.177+ds/src/programs/bamcat.1:73: openend ==> opened
data/biobambam2-2.0.177+ds/src/programs/bamconsensus.cpp:1069: te ==> the, be, we
data/biobambam2-2.0.177+ds/src/programs/bamconsensus.cpp:1115: te ==> the, be, we
data/biobambam2-2.0.177+ds/src/programs/bamconsensus.cpp:1117: te ==> the, be, we
data/biobambam2-2.0.177+ds/src/programs/bamconsensus.cpp:1750: consturct ==> construct
data/biobambam2-2.0.177+ds/src/programs/bamconsensus.cpp:2267: te ==> the, be, we
data/biobambam2-2.0.177+ds/src/programs/bamconsensus.cpp:2453: orignal ==> original
data/biobambam2-2.0.177+ds/src/programs/bamconsensus.cpp:2951: te ==> the, be, we
data/biobambam2-2.0.177+ds/src/programs/bamconsensus.cpp:2993: te ==> the, be, we
data/biobambam2-2.0.177+ds/src/programs/bamconsensus.cpp:3371: TE ==> THE, BE, WE
data/biobambam2-2.0.177+ds/src/programs/bamconsensus.cpp:3397: TE ==> THE, BE, WE
data/biobambam2-2.0.177+ds/src/programs/bamconsensus.cpp:3399: TE ==> THE, BE, WE
data/biobambam2-2.0.177+ds/src/programs/bamconsensus.cpp:3400: TE ==> THE, BE, WE
data/biobambam2-2.0.177+ds/src/programs/bamconsensus.cpp:3484: prevend ==> prevent
data/biobambam2-2.0.177+ds/src/programs/bamconsensus.cpp:3517: TE ==> THE, BE, WE
data/biobambam2-2.0.177+ds/src/programs/bamconsensus.cpp:3559: TE ==> THE, BE, WE
data/biobambam2-2.0.177+ds/src/programs/bamconsensus.cpp:3561: TE ==> THE, BE, WE
data/biobambam2-2.0.177+ds/src/programs/bamconsensus.cpp:3562: TE ==> THE, BE, WE
data/biobambam2-2.0.177+ds/src/programs/bamconsensus.cpp:3771: prevend ==> prevent
data/biobambam2-2.0.177+ds/src/programs/bamconsensus.cpp:3773: prevend ==> prevent
data/biobambam2-2.0.177+ds/src/programs/bamconsensus.cpp:3775: prevend ==> prevent
data/biobambam2-2.0.177+ds/src/programs/bamconsensus.cpp:3780: prevend ==> prevent
data/biobambam2-2.0.177+ds/src/programs/bamconsensus.cpp:3788: prevend ==> prevent
data/biobambam2-2.0.177+ds/src/programs/bamconsensus.cpp:3790: prevend ==> prevent
data/biobambam2-2.0.177+ds/src/programs/bamconsensus.cpp:3791: prevend ==> prevent
data/biobambam2-2.0.177+ds/src/programs/bamconsensus.cpp:3831: te ==> the, be, we
data/biobambam2-2.0.177+ds/src/programs/bamconsensus.cpp:4143: prevend ==> prevent
data/biobambam2-2.0.177+ds/src/programs/bamconsensus.cpp:4145: prevend ==> prevent
data/biobambam2-2.0.177+ds/src/programs/bamdisthist.cpp:39: hist ==> heist, his
data/biobambam2-2.0.177+ds/src/programs/bamdisthist.cpp:51: hist ==> heist, his
data/biobambam2-2.0.177+ds/src/programs/bamdisthist.cpp:114: hist ==> heist, his
data/biobambam2-2.0.177+ds/src/programs/bamdisthist.cpp:132: hist ==> heist, his
data/biobambam2-2.0.177+ds/src/programs/bamdisthist.cpp:134: hist ==> heist, his
data/biobambam2-2.0.177+ds/src/programs/bamdisthist.cpp:160: hist ==> heist, his
data/biobambam2-2.0.177+ds/src/programs/bamdisthist.cpp:164: hist ==> heist, his
data/biobambam2-2.0.177+ds/src/programs/bamdisthist.cpp:164: hist ==> heist, his
data/biobambam2-2.0.177+ds/src/programs/bamdisthist.cpp:172: hist ==> heist, his
data/biobambam2-2.0.177+ds/src/programs/bamdisthist.cpp:180: hist ==> heist, his
data/biobambam2-2.0.177+ds/src/programs/bamdisthist.cpp:204: hist ==> heist, his
data/biobambam2-2.0.177+ds/src/programs/bamdisthist.cpp:204: hist ==> heist, his
data/biobambam2-2.0.177+ds/src/programs/bamdisthist.cpp:205: hist ==> heist, his
data/biobambam2-2.0.177+ds/src/programs/bamdisthist.cpp:205: hist ==> heist, his
data/biobambam2-2.0.177+ds/src/programs/bamdownsamplerandom.1:178: contast ==> contrast, contest
data/biobambam2-2.0.177+ds/src/programs/bamexploderg.cpp:55: multple ==> multiple
data/biobambam2-2.0.177+ds/src/programs/bamexploderg.cpp:124: larg ==> large
data/biobambam2-2.0.177+ds/src/programs/bamexploderg.cpp:125: larg ==> large
data/biobambam2-2.0.177+ds/src/programs/bamexploderg.cpp:127: larg ==> large
data/biobambam2-2.0.177+ds/src/programs/bamexploderg.cpp:132: larg ==> large
data/biobambam2-2.0.177+ds/src/programs/bamfeaturecount.cpp:738: ba ==> by, be
data/biobambam2-2.0.177+ds/src/programs/bamfeaturecount.cpp:741: ba ==> by, be
data/biobambam2-2.0.177+ds/src/programs/bamfillquery.cpp:196: cotained ==> contained
data/biobambam2-2.0.177+ds/src/programs/bamfixmatecoordinates.cpp:157: BA ==> BY, BE
data/biobambam2-2.0.177+ds/src/programs/bamfixmatecoordinates.cpp:161: BA ==> BY, BE
data/biobambam2-2.0.177+ds/src/programs/bamfixmatecoordinates.cpp:161: BA ==> BY, BE
data/biobambam2-2.0.177+ds/src/programs/bamflagsplit.cpp:733: sigle ==> single, sigil
data/biobambam2-2.0.177+ds/src/programs/bamflagsplit.cpp:737: sigle ==> single, sigil
data/biobambam2-2.0.177+ds/src/programs/bamflagsplit.cpp:741: sigle ==> single, sigil
data/biobambam2-2.0.177+ds/src/programs/bamflagsplit.cpp:745: sigle ==> single, sigil
data/biobambam2-2.0.177+ds/src/programs/bamflagsplit.cpp:749: sigle ==> single, sigil
data/biobambam2-2.0.177+ds/src/programs/bamflagsplit.cpp:753: sigle ==> single, sigil
data/biobambam2-2.0.177+ds/src/programs/bamflagsplit.cpp:757: sigle ==> single, sigil
data/biobambam2-2.0.177+ds/src/programs/bamflagsplit.cpp:761: sigle ==> single, sigil
data/biobambam2-2.0.177+ds/src/programs/bamintervalcommenthist.cpp:50: hist ==> heist, his
data/biobambam2-2.0.177+ds/src/programs/bamintervalcommenthist.cpp:90: hist ==> heist, his
data/biobambam2-2.0.177+ds/src/programs/bamintervalcommenthist.cpp:90: hist ==> heist, his
data/biobambam2-2.0.177+ds/src/programs/bamintervalcommenthist.cpp:181: hist ==> heist, his
data/biobambam2-2.0.177+ds/src/programs/bamintervalcommenthist.cpp:228: hist ==> heist, his
data/biobambam2-2.0.177+ds/src/programs/bamintervalcommenthist.cpp:241: hist ==> heist, his
data/biobambam2-2.0.177+ds/src/programs/bamintervalcommenthist.cpp:271: hist ==> heist, his
data/biobambam2-2.0.177+ds/src/programs/bamintervalcommenthist.cpp:284: hist ==> heist, his
data/biobambam2-2.0.177+ds/src/programs/bammarkduplicates.cpp:442: als ==> also
data/biobambam2-2.0.177+ds/src/programs/bammarkduplicates.cpp:470: als ==> also
data/biobambam2-2.0.177+ds/src/programs/bammarkduplicates.cpp:487: als ==> also
data/biobambam2-2.0.177+ds/src/programs/bammarkduplicates.cpp:617: als ==> also
data/biobambam2-2.0.177+ds/src/programs/bammarkduplicates.cpp:617: als ==> also
data/biobambam2-2.0.177+ds/src/programs/bammarkduplicates.cpp:639: als ==> also
data/biobambam2-2.0.177+ds/src/programs/bammarkduplicates.cpp:656: als ==> also
data/biobambam2-2.0.177+ds/src/programs/bammarkduplicates.cpp:657: als ==> also
data/biobambam2-2.0.177+ds/src/programs/bammarkduplicates.cpp:657: als ==> also
data/biobambam2-2.0.177+ds/src/programs/bammarkduplicates.cpp:659: als ==> also
data/biobambam2-2.0.177+ds/src/programs/bammarkduplicates.cpp:666: als ==> also
data/biobambam2-2.0.177+ds/src/programs/bammarkduplicates.cpp:666: als ==> also
data/biobambam2-2.0.177+ds/src/programs/bammarkduplicates2.cpp:1459: als ==> also
data/biobambam2-2.0.177+ds/src/programs/bammarkduplicates2.cpp:1500: als ==> also
data/biobambam2-2.0.177+ds/src/programs/bammarkduplicates2.cpp:1517: als ==> also
data/biobambam2-2.0.177+ds/src/programs/bammarkduplicates2.cpp:1660: als ==> also
data/biobambam2-2.0.177+ds/src/programs/bammarkduplicates2.cpp:1660: als ==> also
data/biobambam2-2.0.177+ds/src/programs/bammarkduplicates2.cpp:1708: als ==> also
data/biobambam2-2.0.177+ds/src/programs/bammarkduplicates2.cpp:1709: als ==> also
data/biobambam2-2.0.177+ds/src/programs/bammarkduplicates2.cpp:1709: als ==> also
data/biobambam2-2.0.177+ds/src/programs/bammarkduplicates2.cpp:1711: als ==> also
data/biobambam2-2.0.177+ds/src/programs/bammarkduplicates2.cpp:1718: als ==> also
data/biobambam2-2.0.177+ds/src/programs/bammarkduplicates2.cpp:1718: als ==> also
data/biobambam2-2.0.177+ds/src/programs/bammarkduplicatesopt.cpp:510: als ==> also
data/biobambam2-2.0.177+ds/src/programs/bammarkduplicatesopt.cpp:566: als ==> also
data/biobambam2-2.0.177+ds/src/programs/bammarkduplicatesopt.cpp:583: als ==> also
data/biobambam2-2.0.177+ds/src/programs/bammarkduplicatesopt.cpp:713: als ==> also
data/biobambam2-2.0.177+ds/src/programs/bammarkduplicatesopt.cpp:713: als ==> also
data/biobambam2-2.0.177+ds/src/programs/bammarkduplicatesopt.cpp:757: als ==> also
data/biobambam2-2.0.177+ds/src/programs/bammarkduplicatesopt.cpp:775: als ==> also
data/biobambam2-2.0.177+ds/src/programs/bammarkduplicatesopt.cpp:776: als ==> also
data/biobambam2-2.0.177+ds/src/programs/bammarkduplicatesopt.cpp:776: als ==> also
data/biobambam2-2.0.177+ds/src/programs/bammarkduplicatesopt.cpp:778: als ==> also
data/biobambam2-2.0.177+ds/src/programs/bammarkduplicatesopt.cpp:785: als ==> also
data/biobambam2-2.0.177+ds/src/programs/bammarkduplicatesopt.cpp:785: als ==> also
data/biobambam2-2.0.177+ds/src/programs/bammarkduplicatesoptdist.cpp:581: als ==> also
data/biobambam2-2.0.177+ds/src/programs/bammarkduplicatesoptdist.cpp:637: als ==> also
data/biobambam2-2.0.177+ds/src/programs/bammarkduplicatesoptdist.cpp:654: als ==> also
data/biobambam2-2.0.177+ds/src/programs/bammarkduplicatesoptdist.cpp:784: als ==> also
data/biobambam2-2.0.177+ds/src/programs/bammarkduplicatesoptdist.cpp:784: als ==> also
data/biobambam2-2.0.177+ds/src/programs/bammarkduplicatesoptdist.cpp:828: als ==> also
data/biobambam2-2.0.177+ds/src/programs/bammarkduplicatesoptdist.cpp:846: als ==> also
data/biobambam2-2.0.177+ds/src/programs/bammarkduplicatesoptdist.cpp:847: als ==> also
data/biobambam2-2.0.177+ds/src/programs/bammarkduplicatesoptdist.cpp:847: als ==> also
data/biobambam2-2.0.177+ds/src/programs/bammarkduplicatesoptdist.cpp:849: als ==> also
data/biobambam2-2.0.177+ds/src/programs/bammarkduplicatesoptdist.cpp:856: als ==> also
data/biobambam2-2.0.177+ds/src/programs/bammarkduplicatesoptdist.cpp:856: als ==> also
data/biobambam2-2.0.177+ds/src/programs/bamtagconversion.cpp:19: ouput ==> output
data/biobambam2-2.0.177+ds/src/programs/blastnxmltobam.cpp:132: posistion ==> position
data/biobambam2-2.0.177+ds/src/programs/blastnxmltobam.cpp:146: transfered ==> transferred
data/biobambam2-2.0.177+ds/src/programs/fastaselectreg.cpp:37: gziped ==> gzipped
data/biobambam2-2.0.177+ds/src/programs/fastaselectreg.cpp:39: gziped ==> gzipped
data/biobambam2-2.0.177+ds/src/programs/fastqtobam.cpp:1237: FO ==> OF, FOR
data/biobambam2-2.0.177+ds/src/programs/fastqtobam2.cpp:3059: enque ==> enqueue
data/biobambam2-2.0.177+ds/src/programs/fastqtobam2.cpp:3091: enque ==> enqueue
data/biobambam2-2.0.177+ds/src/programs/fastqtobam2.cpp:3471: enque ==> enqueue
data/biobambam2-2.0.177+ds/src/programs/fastqtobam2.cpp:3477: enque ==> enqueue
data/biobambam2-2.0.177+ds/src/programs/fastqtobam2.cpp:3496: enque ==> enqueue
data/biobambam2-2.0.177+ds/src/programs/fastqtobam2.cpp:3524: enque ==> enqueue
data/biobambam2-2.0.177+ds/src/programs/fastqtobam2.cpp:3591: enque ==> enqueue
data/biobambam2-2.0.177+ds/src/programs/fastqtobam2.cpp:3705: enque ==> enqueue
data/biobambam2-2.0.177+ds/src/programs/fastqtobam2.cpp:3775: enque ==> enqueue
data/biobambam2-2.0.177+ds/src/programs/fastqtobam2.cpp:4278: FO ==> OF, FOR
data/biobambam2-2.0.177+ds/src/programs/fastqtobampar.cpp:123: FO ==> OF, FOR
data/biobambam2-2.0.177+ds/src/programs/vcfreplacecontigsmap.cpp:73: TE ==> THE, BE, WE
data/biobambam2-2.0.177+ds/src/programs/vcfreplacecontigsmap.cpp:79: TE ==> THE, BE, WE
data/biobambam2-2.0.177+ds/src/programs/vcfreplacecontigsmap.cpp:80: TE ==> THE, BE, WE
data/biobambam2-2.0.177+ds/src/programs/vcfreplacecontigsmap.cpp:82: TE ==> THE, BE, WE
data/biobambam2-2.0.177+ds/src/programs/vcfreplacecontigsmap.cpp:83: TE ==> THE, BE, WE
data/biobambam2-2.0.177+ds/src/programs/bammaskflags.1:29: UE ==> USE, DUE
data/biobambam2-2.0.177+ds/src/programs/fastqtobam.1:67: FO ==> OF, FOR
data/biobambam2-2.0.177+ds/debian/patches/manuals.patch:212: auxilliary ==> auxiliary
data/biobambam2-2.0.177+ds/debian/patches/manuals.patch:223: specifiying ==> specifying
data/biobambam2-2.0.177+ds/debian/patches/manuals.patch:243: constrast ==> contrast
data/biobambam2-2.0.177+ds/debian/patches/manuals.patch:268: constrast ==> contrast
data/biobambam2-2.0.177+ds/debian/patches/manuals.patch:293: constrast ==> contrast
data/biobambam2-2.0.177+ds/debian/patches/manuals.patch:320: UE ==> USE, DUE
data/biobambam2-2.0.177+ds/debian/patches/manuals.patch:385: auxilliary ==> auxiliary
data/biobambam2-2.0.177+ds/debian/patches/manuals.patch:407: constrast ==> contrast
data/biobambam2-2.0.177+ds/debian/patches/manuals.patch:418: constrast ==> contrast
data/biobambam2-2.0.177+ds/debian/patches/manuals.patch:427: constrast ==> contrast
data/biobambam2-2.0.177+ds/debian/patches/manuals.patch:438: identifer ==> identifier
data/biobambam2-2.0.177+ds/debian/patches/manuals.patch:440: FO ==> OF, FOR
data/biobambam2-2.0.177+ds/debian/patches/spelling-error-in-binary.patch:13: successfull ==> successful
data/biobambam2-2.0.177+ds/debian/patches/spelling-error-in-binary.patch:14: successfull ==> successful
data/biobambam2-2.0.177+ds/.pc/manuals.patch/src/programs/bamcollate2.1:199: auxilliary ==> auxiliary
data/biobambam2-2.0.177+ds/.pc/manuals.patch/src/programs/bamconsensus.1:28: specifiying ==> specifying
data/biobambam2-2.0.177+ds/.pc/manuals.patch/src/programs/bammarkduplicates.1:136: constrast ==> contrast
data/biobambam2-2.0.177+ds/.pc/manuals.patch/src/programs/bammarkduplicates.1:140: ouptut ==> output
data/biobambam2-2.0.177+ds/.pc/manuals.patch/src/programs/bammarkduplicates2.1:141: constrast ==> contrast
data/biobambam2-2.0.177+ds/.pc/manuals.patch/src/programs/bammarkduplicates2.1:145: ouptut ==> output
data/biobambam2-2.0.177+ds/.pc/manuals.patch/src/programs/bammarkduplicatesopt.1:139: constrast ==> contrast
data/biobambam2-2.0.177+ds/.pc/manuals.patch/src/programs/bammarkduplicatesopt.1:143: ouptut ==> output
data/biobambam2-2.0.177+ds/.pc/manuals.patch/src/programs/bammdnm.1:10: auxilliary ==> auxiliary
data/biobambam2-2.0.177+ds/.pc/manuals.patch/src/programs/bamreset.1:112: auxilliary ==> auxiliary
data/biobambam2-2.0.177+ds/.pc/manuals.patch/src/programs/bamsort.1:223: constrast ==> contrast
data/biobambam2-2.0.177+ds/.pc/manuals.patch/src/programs/bamstreamingmarkduplicates.1:14: constrast ==> contrast
data/biobambam2-2.0.177+ds/.pc/manuals.patch/src/programs/bamstreamingmarkduplicates.1:132: constrast ==> contrast
data/biobambam2-2.0.177+ds/.pc/manuals.patch/src/programs/fastqtobam.1:66: identifer ==> identifier
data/biobambam2-2.0.177+ds/.pc/manuals.patch/src/programs/fastqtobam.1:67: FO ==> OF, FOR
data/biobambam2-2.0.177+ds/.pc/spelling-error-in-binary.patch/src/programs/bamvalidate.cpp:285: successfull ==> successful
data/biobambam2-2.0.177+ds/.pc/spelling-error-in-binary.patch/src/programs/bamvalidate.cpp:286: successfull ==> successful