data/bioperl-1.7.7/AUTHORS:188: ist ==> is, it, its, it's, sit, list
data/bioperl-1.7.7/Changes:29: TBE ==> THE
data/bioperl-1.7.7/Changes:341: idiosyncracies ==> idiosyncrasies
data/bioperl-1.7.7/Changes:487: synching ==> syncing
data/bioperl-1.7.7/Changes:984: commmand-line ==> command-line
data/bioperl-1.7.7/Changes:1052: superceded ==> superseded
data/bioperl-1.7.7/Changes:1065: compatability ==> compatibility
data/bioperl-1.7.7/Changes:1070: replacment ==> replacement
data/bioperl-1.7.7/Changes:1121: reccomended ==> recommended
data/bioperl-1.7.7/Changes:1161: parametes ==> parameters
data/bioperl-1.7.7/Changes:1264: mininum ==> minimum
data/bioperl-1.7.7/Changes:1275: occured ==> occurred
data/bioperl-1.7.7/Changes:1475: unexpeted ==> unexpected
data/bioperl-1.7.7/Changes:1560: principly ==> principally
data/bioperl-1.7.7/Changes:1829: afor ==> for
data/bioperl-1.7.7/Changes:1899: inifinite ==> infinite
data/bioperl-1.7.7/LICENSE:376: MERCHANTIBILITY ==> MERCHANTABILITY
data/bioperl-1.7.7/MANIFEST:903: tre ==> tree
data/bioperl-1.7.7/MANIFEST:952: fof ==> for
data/bioperl-1.7.7/MANIFEST:1245: tre ==> tree
data/bioperl-1.7.7/MANIFEST:1389: tre ==> tree
data/bioperl-1.7.7/bin/bp_fetch:25: delibrately ==> deliberately
data/bioperl-1.7.7/bin/bp_fetch:267: guidlines ==> guidelines
data/bioperl-1.7.7/bin/bp_seqpart:52: DEPENDANCY ==> DEPENDENCY
data/bioperl-1.7.7/bin/bp_search2gff:81: defauly ==> default
data/bioperl-1.7.7/bin/bp_oligo_count:175: addres ==> address
data/bioperl-1.7.7/bin/bp_genbank2gff3:1685: everytime ==> every time
data/bioperl-1.7.7/bin/bp_genbank2gff3:1718: everytime ==> every time
data/bioperl-1.7.7/bin/bp_genbank2gff3:1880: tYES ==> types, ties
data/bioperl-1.7.7/bin/bp_translate_seq:54: implicity ==> implicitly
data/bioperl-1.7.7/bin/bp_filter_search:59: searchin ==> searching
data/bioperl-1.7.7/bin/bp_mask_by_search:76: cahr ==> char
data/bioperl-1.7.7/bin/bp_revtrans-motif:420: WHN ==> WHEN
data/bioperl-1.7.7/bin/bp_revtrans-motif:468: ADN ==> AND
data/bioperl-1.7.7/bin/bp_revtrans-motif:469: THN ==> THEN
data/bioperl-1.7.7/bin/bp_revtrans-motif:473: HDA ==> HAD
data/bioperl-1.7.7/bin/bp_revtrans-motif:494: WAN ==> WANT
data/bioperl-1.7.7/bin/bp_revtrans-motif:497: ANS ==> AND
data/bioperl-1.7.7/bin/bp_revtrans-motif:505: HSA ==> HAS
data/bioperl-1.7.7/bin/bp_revtrans-motif:508: VAS ==> WAS
data/bioperl-1.7.7/bin/bp_revtrans-motif:515: SAV ==> SAVE
data/bioperl-1.7.7/bin/bp_revtrans-motif:517: WTH ==> WITH
data/bioperl-1.7.7/bin/bp_revtrans-motif:525: THS ==> THE, THIS
data/bioperl-1.7.7/bin/bp_revtrans-motif:525: THW ==> THE, THAW
data/bioperl-1.7.7/bin/bp_revtrans-motif:541: WYA ==> WAY
data/bioperl-1.7.7/bin/bp_revtrans-motif:546: AKS ==> ASK
data/bioperl-1.7.7/bin/bp_revtrans-motif:547: ACN ==> CAN, ACNE
data/bioperl-1.7.7/bin/bp_revtrans-motif:548: CNA ==> CAN
data/bioperl-1.7.7/bin/bp_revtrans-motif:555: DAA ==> DATA
data/bioperl-1.7.7/bin/bp_revtrans-motif:556: HAA ==> HAS
data/bioperl-1.7.7/bin/bp_revtrans-motif:562: THA ==> THAN, THAT, THE
data/bioperl-1.7.7/bin/bp_revtrans-motif:562: THT ==> THE, THAT
data/bioperl-1.7.7/bin/bp_find-blast-matches:111: DEPENDANCIES ==> DEPENDENCIES
data/bioperl-1.7.7/bin/bp_find-blast-matches:183: conjuction ==> conjunction
data/bioperl-1.7.7/t/Seq/Quality.t:134: isnt ==> isn't
data/bioperl-1.7.7/t/Seq/Quality.t:347: lenght ==> length
data/bioperl-1.7.7/t/Seq/Quality.t:348: hte ==> the
data/bioperl-1.7.7/t/Seq/LocatableSeq.t:308: isnt ==> isn't
data/bioperl-1.7.7/t/Root/IO.t:187: isnt ==> isn't
data/bioperl-1.7.7/t/Root/RootI.t:199: isnt ==> isn't
data/bioperl-1.7.7/t/Root/Exception.t:25: implementating ==> implementing
data/bioperl-1.7.7/t/data/MmCT:27: Ser ==> Set
data/bioperl-1.7.7/t/data/MmCT:28: Ser ==> Set
data/bioperl-1.7.7/t/data/MmCT:29: Ser ==> Set
data/bioperl-1.7.7/t/data/MmCT:30: Ser ==> Set
data/bioperl-1.7.7/t/data/MmCT:62: Ser ==> Set
data/bioperl-1.7.7/t/data/MmCT:63: Ser ==> Set
data/bioperl-1.7.7/t/data/so.obo:260: chnage ==> change
data/bioperl-1.7.7/t/data/so.obo:601: irreversable ==> irreversible
data/bioperl-1.7.7/t/data/so.obo:644: transpable ==> transposable
data/bioperl-1.7.7/t/data/so.obo:871: unvailable ==> unavailable
data/bioperl-1.7.7/t/data/so.obo:1693: strcutures ==> structures
data/bioperl-1.7.7/t/data/so.obo:1738: interupted ==> interrupted
data/bioperl-1.7.7/t/data/so.obo:1858: interupted ==> interrupted
data/bioperl-1.7.7/t/data/so.obo:2089: whioch ==> which
data/bioperl-1.7.7/t/data/so.obo:2860: entitity ==> entity
data/bioperl-1.7.7/t/data/so.obo:3052: occuring ==> occurring
data/bioperl-1.7.7/t/data/so.obo:3088: preceeding ==> preceding, proceeding
data/bioperl-1.7.7/t/data/so.obo:3184: continous ==> continuous
data/bioperl-1.7.7/t/data/so.obo:4039: maintenence ==> maintenance
data/bioperl-1.7.7/t/data/so.obo:4441: occured ==> occurred
data/bioperl-1.7.7/t/data/so.obo:4640: interupted ==> interrupted
data/bioperl-1.7.7/t/data/so.obo:4722: unkown ==> unknown
data/bioperl-1.7.7/t/data/so.obo:4946: respose ==> response
data/bioperl-1.7.7/t/data/so.obo:5070: defintition ==> definition
data/bioperl-1.7.7/t/data/so.obo:6230: pase ==> pass, pace, parse
data/bioperl-1.7.7/t/data/roa1.dat:24: Alle ==> All, alley
data/bioperl-1.7.7/t/data/U58726.gb:119: seqences ==> sequences
data/bioperl-1.7.7/t/data/P39765.gb:65: Noone ==> No one
data/bioperl-1.7.7/t/data/P35527.gb:15: hsa ==> has
data/bioperl-1.7.7/t/data/roa1.swiss:187: Hart ==> Heart, harm
data/bioperl-1.7.7/t/data/phipsi.out:422: TESTIN ==> TESTING
data/bioperl-1.7.7/t/data/phipsi.out:762: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/phipsi.out:826: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/phipsi.out:858: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/phipsi.out:923: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/phipsi.out:988: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/phipsi.out:1248: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/phipsi.out:1280: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/phipsi.out:1312: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/phipsi.out:1371: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/phipsi.out:1408: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/phipsi.out:1491: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/phipsi.out:1628: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/phipsi.out:1664: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/phipsi.out:1729: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/phipsi.out:1773: BA ==> BY, BE
data/bioperl-1.7.7/t/data/phipsi.out:1820: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/phipsi.out:1922: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/phipsi.out:1934: TESTIN ==> TESTING
data/bioperl-1.7.7/t/data/phipsi.out:1954: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/phipsi.out:2019: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/phipsi.out:2115: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/phipsi.out:2147: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/phipsi.out:2224: BA ==> BY, BE
data/bioperl-1.7.7/t/data/phipsi.out:2551: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/D10483.gbk:7: groP ==> group, drop
data/bioperl-1.7.7/t/data/D10483.gbk:228: hisT ==> heist, his
data/bioperl-1.7.7/t/data/D10483.gbk:632: groP ==> group, drop
data/bioperl-1.7.7/t/data/puzzle.tre:1: anid ==> and
data/bioperl-1.7.7/t/data/puzzle.tre:3: anid ==> and
data/bioperl-1.7.7/t/data/bl2seq.out:20: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/prints.out:83: fLe ==> file
data/bioperl-1.7.7/t/data/AF165282.gb:24: Evry ==> Every
data/bioperl-1.7.7/t/data/cysprot.msf:28: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/testaln.msf:31: ND ==> AND, 2ND
data/bioperl-1.7.7/t/data/roa1_v2.dat:23: Alle ==> All, alley
data/bioperl-1.7.7/t/data/blast.report:207: EDE ==> EDGE
data/bioperl-1.7.7/t/data/blast.report:235: EDE ==> EDGE
data/bioperl-1.7.7/t/data/blast.report:337: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/interpro.xml:65: BA ==> BY, BE
data/bioperl-1.7.7/t/data/interpro.xml:545: ba ==> by, be
data/bioperl-1.7.7/t/data/interpro.xml:591: BA ==> BY, BE
data/bioperl-1.7.7/t/data/interpro.xml:666: ND ==> AND, 2ND
data/bioperl-1.7.7/t/data/interpro.xml:752: targetting ==> targeting
data/bioperl-1.7.7/t/data/interpro.xml:778: BA ==> BY, BE
data/bioperl-1.7.7/t/data/interpro.xml:786: BA ==> BY, BE
data/bioperl-1.7.7/t/data/interpro.xml:794: Brose ==> Browse, rose
data/bioperl-1.7.7/t/data/interpro.xml:971: BA ==> BY, BE
data/bioperl-1.7.7/t/data/interpro.xml:1079: ND ==> AND, 2ND
data/bioperl-1.7.7/t/data/interpro.xml:1376: ND ==> AND, 2ND
data/bioperl-1.7.7/t/data/bug3086.embl:18: Chater ==> Chapter
data/bioperl-1.7.7/t/data/multiseq.bls:88: CNA ==> CAN
data/bioperl-1.7.7/t/data/bug2982.embl:97: EVRY ==> EVERY
data/bioperl-1.7.7/t/data/testaln.mega:21: ND ==> AND, 2ND
data/bioperl-1.7.7/t/data/transfac.dat:32: BA ==> BY, BE
data/bioperl-1.7.7/t/data/transfac.dat:68: BA ==> BY, BE
data/bioperl-1.7.7/t/data/transfac.dat:69: BA ==> BY, BE
data/bioperl-1.7.7/t/data/codeml45b.mlc:44: Ser ==> Set
data/bioperl-1.7.7/t/data/codeml45b.mlc:54: Ser ==> Set
data/bioperl-1.7.7/t/data/codeml45b.mlc:66: Ser ==> Set
data/bioperl-1.7.7/t/data/codeml45b.mlc:76: Ser ==> Set
data/bioperl-1.7.7/t/data/codeml45b.mlc:145: Ser ==> Set
data/bioperl-1.7.7/t/data/codeml45b.mlc:155: Ser ==> Set
data/bioperl-1.7.7/t/data/ECAPAH02.embl:17: groP ==> group, drop
data/bioperl-1.7.7/t/data/ECAPAH02.embl:232: hisT ==> heist, his
data/bioperl-1.7.7/t/data/ECAPAH02.embl:619: groP ==> group, drop
data/bioperl-1.7.7/t/data/test1.wublastp:45: THT ==> THE, THAT
data/bioperl-1.7.7/t/data/test1.wublastp:57: THI ==> THE, THIS
data/bioperl-1.7.7/t/data/test1.wublastp:57: THT ==> THE, THAT
data/bioperl-1.7.7/t/data/test1.wublastp:57: THT ==> THE, THAT
data/bioperl-1.7.7/t/data/test.locuslink:64: hsa ==> has
data/bioperl-1.7.7/t/data/test.locuslink:66: hsa ==> has
data/bioperl-1.7.7/t/data/test.locuslink:68: hsa ==> has
data/bioperl-1.7.7/t/data/test.locuslink:70: hsa ==> has
data/bioperl-1.7.7/t/data/test.locuslink:72: hsa ==> has
data/bioperl-1.7.7/t/data/test.locuslink:74: hsa ==> has
data/bioperl-1.7.7/t/data/test.locuslink:76: hsa ==> has
data/bioperl-1.7.7/t/data/test.locuslink:78: hsa ==> has
data/bioperl-1.7.7/t/data/no_hsps.blastp:24: anid ==> and
data/bioperl-1.7.7/t/data/no_hsps.blastp:47: anid ==> and
data/bioperl-1.7.7/t/data/no_hsps.blastp:51: anid ==> and
data/bioperl-1.7.7/t/data/no_hsps.blastp:74: anid ==> and
data/bioperl-1.7.7/t/data/no_hsps.blastp:81: anid ==> and
data/bioperl-1.7.7/t/data/no_hsps.blastp:97: anid ==> and
data/bioperl-1.7.7/t/data/no_hsps.blastp:101: anid ==> and
data/bioperl-1.7.7/t/data/no_hsps.blastp:114: anid ==> and
data/bioperl-1.7.7/t/data/no_hsps.blastp:139: anid ==> and
data/bioperl-1.7.7/t/data/no_hsps.blastp:140: anid ==> and
data/bioperl-1.7.7/t/data/no_hsps.blastp:163: anid ==> and
data/bioperl-1.7.7/t/data/no_hsps.blastp:164: anid ==> and
data/bioperl-1.7.7/t/data/no_hsps.blastp:177: Stran ==> Strand, strain
data/bioperl-1.7.7/t/data/no_hsps.blastp:178: anid ==> and
data/bioperl-1.7.7/t/data/no_hsps.blastp:180: anid ==> and
data/bioperl-1.7.7/t/data/no_hsps.blastp:182: anid ==> and
data/bioperl-1.7.7/t/data/no_hsps.blastp:198: anid ==> and
data/bioperl-1.7.7/t/data/no_hsps.blastp:206: anid ==> and
data/bioperl-1.7.7/t/data/no_hsps.blastp:207: anid ==> and
data/bioperl-1.7.7/t/data/no_hsps.blastp:227: anid ==> and
data/bioperl-1.7.7/t/data/no_hsps.blastp:240: anid ==> and
data/bioperl-1.7.7/t/data/no_hsps.blastp:252: anid ==> and
data/bioperl-1.7.7/t/data/no_hsps.blastp:253: Stran ==> Strand, strain
data/bioperl-1.7.7/t/data/no_hsps.blastp:262: Stran ==> Strand, strain
data/bioperl-1.7.7/t/data/no_hsps.blastp:271: anid ==> and
data/bioperl-1.7.7/t/data/no_hsps.blastp:276: anid ==> and
data/bioperl-1.7.7/t/data/no_hsps.blastp:284: Stran ==> Strand, strain
data/bioperl-1.7.7/t/data/no_hsps.blastp:286: Stran ==> Strand, strain
data/bioperl-1.7.7/t/data/no_hsps.blastp:287: anid ==> and
data/bioperl-1.7.7/t/data/no_hsps.blastp:292: anid ==> and
data/bioperl-1.7.7/t/data/no_hsps.blastp:312: Stran ==> Strand, strain
data/bioperl-1.7.7/t/data/no_hsps.blastp:318: Stran ==> Strand, strain
data/bioperl-1.7.7/t/data/no_hsps.blastp:327: Stran ==> Strand, strain
data/bioperl-1.7.7/t/data/no_hsps.blastp:347: Stran ==> Strand, strain
data/bioperl-1.7.7/t/data/no_hsps.blastp:362: anid ==> and
data/bioperl-1.7.7/t/data/no_hsps.blastp:396: anid ==> and
data/bioperl-1.7.7/t/data/multi_blast.bls:1117: ND ==> AND, 2ND
data/bioperl-1.7.7/t/data/multi_blast.bls:1799: ND ==> AND, 2ND
data/bioperl-1.7.7/t/data/multi_blast.bls:2257: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/bug2399.tblastn:246: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/bug2399.tblastn:290: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/singlescore.gbk:15: RepID ==> rapid
data/bioperl-1.7.7/t/data/yeast.tRNAscanSE:7: Ser ==> Set
data/bioperl-1.7.7/t/data/yeast.tRNAscanSE:11: Ser ==> Set
data/bioperl-1.7.7/t/data/yeast.tRNAscanSE:24: Ser ==> Set
data/bioperl-1.7.7/t/data/yeast.tRNAscanSE:34: Ser ==> Set
data/bioperl-1.7.7/t/data/yeast.tRNAscanSE:44: Ser ==> Set
data/bioperl-1.7.7/t/data/yeast.tRNAscanSE:48: Undet ==> Under
data/bioperl-1.7.7/t/data/yeast.tRNAscanSE:52: Ser ==> Set
data/bioperl-1.7.7/t/data/yeast.tRNAscanSE:59: Ser ==> Set
data/bioperl-1.7.7/t/data/yeast.tRNAscanSE:75: Ser ==> Set
data/bioperl-1.7.7/t/data/yeast.tRNAscanSE:85: Ser ==> Set
data/bioperl-1.7.7/t/data/yeast.tRNAscanSE:116: Ser ==> Set
data/bioperl-1.7.7/t/data/yeast.tRNAscanSE:133: Ser ==> Set
data/bioperl-1.7.7/t/data/yeast.tRNAscanSE:139: Ser ==> Set
data/bioperl-1.7.7/t/data/yeast.tRNAscanSE:159: Ser ==> Set
data/bioperl-1.7.7/t/data/yeast.tRNAscanSE:192: Undet ==> Under
data/bioperl-1.7.7/t/data/yeast.tRNAscanSE:206: Ser ==> Set
data/bioperl-1.7.7/t/data/yeast.tRNAscanSE:224: Ser ==> Set
data/bioperl-1.7.7/t/data/yeast.tRNAscanSE:244: Ser ==> Set
data/bioperl-1.7.7/t/data/yeast.tRNAscanSE:264: Ser ==> Set
data/bioperl-1.7.7/t/data/yeast.tRNAscanSE:281: Ser ==> Set
data/bioperl-1.7.7/t/data/mini-AE001405.gb:24: Suh ==> Such
data/bioperl-1.7.7/t/data/lysozyme6.protml:18: Ser ==> Set
data/bioperl-1.7.7/t/data/lysozyme6.protml:68: Ser ==> Set
data/bioperl-1.7.7/t/data/lysozyme6.protml:84: Ser ==> Set
data/bioperl-1.7.7/t/data/dcr1_sp.WUBLASTP:254: ND ==> AND, 2ND
data/bioperl-1.7.7/t/data/dcr1_sp.WUBLASTP:1595: IIF ==> IF
data/bioperl-1.7.7/t/data/Kingdoms_DNA.nex:52: BA ==> BY, BE
data/bioperl-1.7.7/t/data/Kingdoms_DNA.nex:88: BA ==> BY, BE
data/bioperl-1.7.7/t/data/Kingdoms_DNA.nex:124: BA ==> BY, BE
data/bioperl-1.7.7/t/data/Kingdoms_DNA.nex:160: BA ==> BY, BE
data/bioperl-1.7.7/t/data/Kingdoms_DNA.nex:196: BA ==> BY, BE
data/bioperl-1.7.7/t/data/Kingdoms_DNA.nex:232: BA ==> BY, BE
data/bioperl-1.7.7/t/data/Kingdoms_DNA.nex:268: BA ==> BY, BE
data/bioperl-1.7.7/t/data/Kingdoms_DNA.nex:304: BA ==> BY, BE
data/bioperl-1.7.7/t/data/Kingdoms_DNA.nex:340: BA ==> BY, BE
data/bioperl-1.7.7/t/data/Kingdoms_DNA.nex:376: BA ==> BY, BE
data/bioperl-1.7.7/t/data/Kingdoms_DNA.nex:412: BA ==> BY, BE
data/bioperl-1.7.7/t/data/Kingdoms_DNA.nex:448: BA ==> BY, BE
data/bioperl-1.7.7/t/data/Kingdoms_DNA.nex:484: BA ==> BY, BE
data/bioperl-1.7.7/t/data/Kingdoms_DNA.nex:520: BA ==> BY, BE
data/bioperl-1.7.7/t/data/Kingdoms_DNA.nex:556: BA ==> BY, BE
data/bioperl-1.7.7/t/data/Kingdoms_DNA.nex:592: BA ==> BY, BE
data/bioperl-1.7.7/t/data/Kingdoms_DNA.nex:628: BA ==> BY, BE
data/bioperl-1.7.7/t/data/Kingdoms_DNA.nex:664: BA ==> BY, BE
data/bioperl-1.7.7/t/data/Kingdoms_DNA.nex:700: BA ==> BY, BE
data/bioperl-1.7.7/t/data/Kingdoms_DNA.nex:736: BA ==> BY, BE
data/bioperl-1.7.7/t/data/Kingdoms_DNA.nex:772: BA ==> BY, BE
data/bioperl-1.7.7/t/data/Kingdoms_DNA.nex:808: BA ==> BY, BE
data/bioperl-1.7.7/t/data/Kingdoms_DNA.nex:855: BA ==> BY, BE
data/bioperl-1.7.7/t/data/a_thaliana.blastn:25: complet ==> complete
data/bioperl-1.7.7/t/data/a_thaliana.blastn:31: complet ==> complete
data/bioperl-1.7.7/t/data/BN000066-tpa.embl:28: Weill ==> Will
data/bioperl-1.7.7/t/data/BN000066-tpa.embl:31: Lond ==> Long
data/bioperl-1.7.7/t/data/bl2seq.bug940.out:93: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/Primate_mtDNA.nex:12: Ser ==> Set
data/bioperl-1.7.7/t/data/adh.mb_tree.nexus:45: differens ==> difference
data/bioperl-1.7.7/t/data/expected.blast.out:1: EXPCT ==> EXPECT
data/bioperl-1.7.7/t/data/expected.blast.out:9: EXPCT ==> EXPECT
data/bioperl-1.7.7/t/data/tol-2010-02-18.nhx:1: afer ==> after
data/bioperl-1.7.7/t/data/tol-2010-02-18.nhx:1: varius ==> various
data/bioperl-1.7.7/t/data/tol-2010-02-18.nhx:1: afer ==> after
data/bioperl-1.7.7/t/data/tol-2010-02-18.nhx:1: varius ==> various
data/bioperl-1.7.7/t/data/tol-2010-02-18.nhx:1: varius ==> various
data/bioperl-1.7.7/t/data/tol-2010-02-18.nhx:1: varius ==> various
data/bioperl-1.7.7/t/data/tol-2010-02-18.nhx:1: alle ==> all, alley
data/bioperl-1.7.7/t/data/tol-2010-02-18.nhx:1: alle ==> all, alley
data/bioperl-1.7.7/t/data/tol-2010-02-18.nhx:1: varius ==> various
data/bioperl-1.7.7/t/data/tol-2010-02-18.nhx:1: varius ==> various
data/bioperl-1.7.7/t/data/tol-2010-02-18.nhx:1: varius ==> various
data/bioperl-1.7.7/t/data/tol-2010-02-18.nhx:1: idae ==> idea
data/bioperl-1.7.7/t/data/tol-2010-02-18.nhx:1: afer ==> after
data/bioperl-1.7.7/t/data/tol-2010-02-18.nhx:1: bitis ==> bits
data/bioperl-1.7.7/t/data/tol-2010-02-18.nhx:1: varius ==> various
data/bioperl-1.7.7/t/data/tol-2010-02-18.nhx:1: afer ==> after
data/bioperl-1.7.7/t/data/tol-2010-02-18.nhx:1: differens ==> difference
data/bioperl-1.7.7/t/data/tol-2010-02-18.nhx:1: afer ==> after
data/bioperl-1.7.7/t/data/tol-2010-02-18.nhx:1: varius ==> various
data/bioperl-1.7.7/t/data/tol-2010-02-18.nhx:1: afer ==> after
data/bioperl-1.7.7/t/data/tol-2010-02-18.nhx:1: thes ==> this, these
data/bioperl-1.7.7/t/data/tol-2010-02-18.nhx:1: heros ==> heroes
data/bioperl-1.7.7/t/data/tol-2010-02-18.nhx:1: varius ==> various
data/bioperl-1.7.7/t/data/tol-2010-02-18.nhx:1: mata ==> meta, mater
data/bioperl-1.7.7/t/data/tol-2010-02-18.nhx:1: otho ==> otoh
data/bioperl-1.7.7/t/data/tol-2010-02-18.nhx:1: idae ==> idea
data/bioperl-1.7.7/t/data/tol-2010-02-18.nhx:1: lybia ==> libya
data/bioperl-1.7.7/t/data/tol-2010-02-18.nhx:1: phasis ==> phases
data/bioperl-1.7.7/t/data/tol-2010-02-18.nhx:1: phasis ==> phases
data/bioperl-1.7.7/t/data/tol-2010-02-18.nhx:1: phasis ==> phases
data/bioperl-1.7.7/t/data/tol-2010-02-18.nhx:1: phasis ==> phases
data/bioperl-1.7.7/t/data/tol-2010-02-18.nhx:1: phasis ==> phases
data/bioperl-1.7.7/t/data/tol-2010-02-18.nhx:1: parana ==> piranha
data/bioperl-1.7.7/t/data/tol-2010-02-18.nhx:1: sigal ==> signal, sigil
data/bioperl-1.7.7/t/data/tol-2010-02-18.nhx:1: heros ==> heroes
data/bioperl-1.7.7/t/data/tol-2010-02-18.nhx:1: menas ==> means
data/bioperl-1.7.7/t/data/tol-2010-02-18.nhx:1: humber ==> number
data/bioperl-1.7.7/t/data/tol-2010-02-18.nhx:1: mata ==> meta, mater
data/bioperl-1.7.7/t/data/tol-2010-02-18.nhx:1: lybia ==> libya
data/bioperl-1.7.7/t/data/tol-2010-02-18.nhx:1: phasis ==> phases
data/bioperl-1.7.7/t/data/tol-2010-02-18.nhx:1: ines ==> lines
data/bioperl-1.7.7/t/data/tol-2010-02-18.nhx:1: ines ==> lines
data/bioperl-1.7.7/t/data/tol-2010-02-18.nhx:1: ines ==> lines
data/bioperl-1.7.7/t/data/tol-2010-02-18.nhx:1: idae ==> idea
data/bioperl-1.7.7/t/data/tol-2010-02-18.nhx:1: sais ==> says
data/bioperl-1.7.7/t/data/tol-2010-02-18.nhx:1: sais ==> says
data/bioperl-1.7.7/t/data/tol-2010-02-18.nhx:1: sais ==> says
data/bioperl-1.7.7/t/data/tol-2010-02-18.nhx:1: paches ==> patches
data/bioperl-1.7.7/t/data/tol-2010-02-18.nhx:1: paches ==> patches
data/bioperl-1.7.7/t/data/tol-2010-02-18.nhx:1: paches ==> patches
data/bioperl-1.7.7/t/data/tol-2010-02-18.nhx:1: paches ==> patches
data/bioperl-1.7.7/t/data/tol-2010-02-18.nhx:1: paches ==> patches
data/bioperl-1.7.7/t/data/tol-2010-02-18.nhx:1: paches ==> patches
data/bioperl-1.7.7/t/data/tol-2010-02-18.nhx:1: paches ==> patches
data/bioperl-1.7.7/t/data/tol-2010-02-18.nhx:1: heros ==> heroes
data/bioperl-1.7.7/t/data/tol-2010-02-18.nhx:1: corus ==> chorus
data/bioperl-1.7.7/t/data/tol-2010-02-18.nhx:1: otho ==> otoh
data/bioperl-1.7.7/t/data/tol-2010-02-18.nhx:1: parana ==> piranha
data/bioperl-1.7.7/t/data/tol-2010-02-18.nhx:1: varius ==> various
data/bioperl-1.7.7/t/data/tol-2010-02-18.nhx:1: varius ==> various
data/bioperl-1.7.7/t/data/tol-2010-02-18.nhx:1: afer ==> after
data/bioperl-1.7.7/t/data/tol-2010-02-18.nhx:1: afer ==> after
data/bioperl-1.7.7/t/data/tol-2010-02-18.nhx:1: parana ==> piranha
data/bioperl-1.7.7/t/data/tol-2010-02-18.nhx:1: bitis ==> bits
data/bioperl-1.7.7/t/data/tol-2010-02-18.nhx:1: diaster ==> disaster
data/bioperl-1.7.7/t/data/tol-2010-02-18.nhx:1: vas ==> was
data/bioperl-1.7.7/t/data/interpro_short.xml:112: reponsible ==> responsible
data/bioperl-1.7.7/t/data/interpro_short.xml:297: Ponting ==> Pointing
data/bioperl-1.7.7/t/data/interpro_short.xml:321: Ponting ==> Pointing
data/bioperl-1.7.7/t/data/psiblastreport.out:62: TESTIN ==> TESTING
data/bioperl-1.7.7/t/data/psiblastreport.out:427: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/psiblastreport.out:459: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/psiblastreport.out:490: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/psiblastreport.out:521: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/psiblastreport.out:583: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/psiblastreport.out:801: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/psiblastreport.out:833: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/psiblastreport.out:923: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/psiblastreport.out:989: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/psiblastreport.out:1140: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/psiblastreport.out:1167: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/psiblastreport.out:1198: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/psiblastreport.out:1233: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/psiblastreport.out:1245: BA ==> BY, BE
data/bioperl-1.7.7/t/data/psiblastreport.out:1338: TESTIN ==> TESTING
data/bioperl-1.7.7/t/data/psiblastreport.out:1357: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/psiblastreport.out:1388: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/psiblastreport.out:1481: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/psiblastreport.out:1508: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/psiblastreport.out:1601: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/psiblastreport.out:1676: BA ==> BY, BE
data/bioperl-1.7.7/t/data/psiblastreport.out:1788: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/psiblastreport.out:1819: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/psiblastreport.out:2113: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/psiblastreport.out:3528: TESTIN ==> TESTING
data/bioperl-1.7.7/t/data/psiblastreport.out:3814: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/psiblastreport.out:3938: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/psiblastreport.out:3969: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/psiblastreport.out:4268: TESTIN ==> TESTING
data/bioperl-1.7.7/t/data/psiblastreport.out:4287: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/psiblastreport.out:4521: BA ==> BY, BE
data/bioperl-1.7.7/t/data/psiblastreport.out:4571: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/psiblastreport.out:4602: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/psiblastreport.out:4637: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/psiblastreport.out:4664: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/psiblastreport.out:4699: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/psiblastreport.out:4730: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/psiblastreport.out:4742: BA ==> BY, BE
data/bioperl-1.7.7/t/data/psiblastreport.out:4792: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/psiblastreport.out:4823: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/psiblastreport.out:4916: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/psiblastreport.out:5009: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/psiblastreport.out:5040: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/psiblastreport.out:5102: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/psiblastreport.out:5164: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/psiblastreport.out:5195: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/psiblastreport.out:5227: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/psiblastreport.out:5259: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/psiblastreport.out:5811: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/Mcjanrna_rdbII.gbk:4: Bult ==> Built
data/bioperl-1.7.7/t/data/interpro_sample.xml:65: BA ==> BY, BE
data/bioperl-1.7.7/t/data/interpro_sample.xml:545: ba ==> by, be
data/bioperl-1.7.7/t/data/interpro_sample.xml:591: BA ==> BY, BE
data/bioperl-1.7.7/t/data/interpro_sample.xml:666: ND ==> AND, 2ND
data/bioperl-1.7.7/t/data/interpro_sample.xml:752: targetting ==> targeting
data/bioperl-1.7.7/t/data/interpro_sample.xml:778: BA ==> BY, BE
data/bioperl-1.7.7/t/data/interpro_sample.xml:786: BA ==> BY, BE
data/bioperl-1.7.7/t/data/interpro_sample.xml:794: Brose ==> Browse, rose
data/bioperl-1.7.7/t/data/interpro_sample.xml:948: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/quoted-strings1.nex:5: OTU ==> OUT
data/bioperl-1.7.7/t/data/quoted-strings1.nex:15: OTU ==> OUT
data/bioperl-1.7.7/t/data/quoted-strings1.nex:25: OTU ==> OUT
data/bioperl-1.7.7/t/data/regulation_test.obo:17: ND ==> AND, 2ND
data/bioperl-1.7.7/t/data/regulation_test.obo:45: ND ==> AND, 2ND
data/bioperl-1.7.7/t/data/ribosome-slippage.gb:28: Hart ==> Heart, harm
data/bioperl-1.7.7/t/data/ribosome-slippage.gb:117: Ponting ==> Pointing
data/bioperl-1.7.7/t/data/AE003644_Adh-genomic.gb:18: Wan ==> Want
data/bioperl-1.7.7/t/data/AE003644_Adh-genomic.gb:55: Wan ==> Want
data/bioperl-1.7.7/t/data/AE003644_Adh-genomic.gb:84: Gude ==> Guide, good
data/bioperl-1.7.7/t/data/interpro_relationship.xml:65: BA ==> BY, BE
data/bioperl-1.7.7/t/data/interpro_relationship.xml:545: ba ==> by, be
data/bioperl-1.7.7/t/data/interpro_relationship.xml:591: BA ==> BY, BE
data/bioperl-1.7.7/t/data/interpro_relationship.xml:666: ND ==> AND, 2ND
data/bioperl-1.7.7/t/data/interpro_relationship.xml:752: targetting ==> targeting
data/bioperl-1.7.7/t/data/interpro_relationship.xml:778: BA ==> BY, BE
data/bioperl-1.7.7/t/data/interpro_relationship.xml:786: BA ==> BY, BE
data/bioperl-1.7.7/t/data/interpro_relationship.xml:794: Brose ==> Browse, rose
data/bioperl-1.7.7/t/data/interpro_relationship.xml:971: BA ==> BY, BE
data/bioperl-1.7.7/t/data/interpro_relationship.xml:1079: ND ==> AND, 2ND
data/bioperl-1.7.7/t/data/interpro_relationship.xml:1376: ND ==> AND, 2ND
data/bioperl-1.7.7/t/data/interpro_relationship.xml:2819: formate ==> format
data/bioperl-1.7.7/t/data/interpro_relationship.xml:2890: Skelton ==> Skeleton
data/bioperl-1.7.7/t/data/interpro_relationship.xml:3033: Ser ==> Set
data/bioperl-1.7.7/t/data/interpro_relationship.xml:3052: ND ==> AND, 2ND
data/bioperl-1.7.7/t/data/interpro_relationship.xml:3571: Ser ==> Set
data/bioperl-1.7.7/t/data/interpro_relationship.xml:3976: BA ==> BY, BE
data/bioperl-1.7.7/t/data/interpro_relationship.xml:4278: Bult ==> Built
data/bioperl-1.7.7/t/data/interpro_relationship.xml:4278: BA ==> BY, BE
data/bioperl-1.7.7/t/data/interpro_relationship.xml:5154: BA ==> BY, BE
data/bioperl-1.7.7/t/data/interpro_relationship.xml:6086: reprsents ==> represents
data/bioperl-1.7.7/t/data/interpro_relationship.xml:6617: BA ==> BY, BE
data/bioperl-1.7.7/t/data/interpro_relationship.xml:7612: BA ==> BY, BE
data/bioperl-1.7.7/t/data/interpro_relationship.xml:7826: Ser ==> Set
data/bioperl-1.7.7/t/data/interpro_relationship.xml:7858: BA ==> BY, BE
data/bioperl-1.7.7/t/data/interpro_relationship.xml:7866: ND ==> AND, 2ND
data/bioperl-1.7.7/t/data/interpro_relationship.xml:8078: BA ==> BY, BE
data/bioperl-1.7.7/t/data/interpro_relationship.xml:8177: Skelton ==> Skeleton
data/bioperl-1.7.7/t/data/interpro_relationship.xml:8203: Holliday ==> Holiday
data/bioperl-1.7.7/t/data/interpro_relationship.xml:8203: Holliday ==> Holiday
data/bioperl-1.7.7/t/data/interpro_relationship.xml:8203: Holliday ==> Holiday
data/bioperl-1.7.7/t/data/interpro_relationship.xml:8203: Holliday ==> Holiday
data/bioperl-1.7.7/t/data/interpro_relationship.xml:8233: Holliday ==> Holiday
data/bioperl-1.7.7/t/data/tandem_repeats_finder.dat:1: writen ==> written
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:221: complet ==> complete
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:284: alph ==> alpha
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:400: complet ==> complete
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:431: complet ==> complete
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:438: complet ==> complete
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:461: complet ==> complete
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:5840: ND ==> AND, 2ND
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:6057: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:6061: ND ==> AND, 2ND
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:6670: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:6710: VAS ==> WAS
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:6980: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:7131: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:7282: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:7429: ND ==> AND, 2ND
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:7861: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:8011: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:8162: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:8271: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:8380: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:8530: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:8685: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:8777: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:8890: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:10499: ND ==> AND, 2ND
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:10642: ND ==> AND, 2ND
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:10699: VAS ==> WAS
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:10715: ND ==> AND, 2ND
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:10757: VAS ==> WAS
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:10773: ND ==> AND, 2ND
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:12942: ND ==> AND, 2ND
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:12982: ND ==> AND, 2ND
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:13291: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:13388: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:13477: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:13565: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:13654: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:13743: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:13832: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:13921: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:14010: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:14245: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:14381: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:14465: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:14549: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:14633: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:14721: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:14806: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:14898: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:15002: DAEL ==> DEAL, DIAL, DAHL
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:15027: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:15366: ND ==> AND, 2ND
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:16145: VAS ==> WAS
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:16233: ND ==> AND, 2ND
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:16874: SER ==> SET
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:17203: ND ==> AND, 2ND
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:17263: ND ==> AND, 2ND
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:17900: ND ==> AND, 2ND
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:18334: ND ==> AND, 2ND
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:19504: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:19540: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:23681: VAS ==> WAS
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:23699: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:23850: ND ==> AND, 2ND
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:27801: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:30003: ND ==> AND, 2ND
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:30061: ND ==> AND, 2ND
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:30338: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:30961: WLL ==> WILL
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:32108: SER ==> SET
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:32252: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:33116: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:35208: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:35490: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:35716: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:36642: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:36868: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:37094: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:37320: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:37546: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:37772: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/1ZZ19XR301R-Alignment.tblastn:37998: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/NC_000007-ribosomal-slippage.gb:97: Ponting ==> Pointing
data/bioperl-1.7.7/t/data/NC_000007-ribosomal-slippage.gb:29385: LIMK ==> LINK
data/bioperl-1.7.7/t/data/NC_000007-ribosomal-slippage.gb:29399: LIMK ==> LINK
data/bioperl-1.7.7/t/data/NC_000007-ribosomal-slippage.gb:29416: LIMK ==> LINK
data/bioperl-1.7.7/t/data/NC_000007-ribosomal-slippage.gb:29436: LIMK ==> LINK
data/bioperl-1.7.7/t/data/NC_000007-ribosomal-slippage.gb:29453: LIMK ==> LINK
data/bioperl-1.7.7/t/data/NC_000007-ribosomal-slippage.gb:40221: Fo ==> Of, for
data/bioperl-1.7.7/t/data/NC_000007-ribosomal-slippage.gb:40234: Fo ==> Of, for
data/bioperl-1.7.7/t/data/NC_000007-ribosomal-slippage.gb:40247: Fo ==> Of, for
data/bioperl-1.7.7/t/data/NC_000007-ribosomal-slippage.gb:40260: Fo ==> Of, for
data/bioperl-1.7.7/t/data/NC_000007-ribosomal-slippage.gb:47483: PRES ==> PRESS
data/bioperl-1.7.7/t/data/NC_000007-ribosomal-slippage.gb:47502: PRES ==> PRESS
data/bioperl-1.7.7/t/data/NC_000007-ribosomal-slippage.gb:47523: PRES ==> PRESS
data/bioperl-1.7.7/t/data/NC_000007-ribosomal-slippage.gb:47541: PRES ==> PRESS
data/bioperl-1.7.7/t/data/NC_000007-ribosomal-slippage.gb:47561: PRES ==> PRESS
data/bioperl-1.7.7/t/data/NC_000007-ribosomal-slippage.gb:47579: PRES ==> PRESS
data/bioperl-1.7.7/t/data/NC_000007-ribosomal-slippage.gb:47602: PRES ==> PRESS
data/bioperl-1.7.7/t/data/NC_000007-ribosomal-slippage.gb:47627: PRES ==> PRESS
data/bioperl-1.7.7/t/data/NC_000007-ribosomal-slippage.gb:47650: PRES ==> PRESS
data/bioperl-1.7.7/t/data/NC_000007-ribosomal-slippage.gb:47672: PRES ==> PRESS
data/bioperl-1.7.7/t/data/NC_000007-ribosomal-slippage.gb:47696: PRES ==> PRESS
data/bioperl-1.7.7/t/data/NC_000007-ribosomal-slippage.gb:51589: testin ==> testing
data/bioperl-1.7.7/t/data/NC_000007-ribosomal-slippage.gb:51622: testin ==> testing
data/bioperl-1.7.7/t/data/NC_000007-ribosomal-slippage.gb:59257: HSI ==> HIS
data/bioperl-1.7.7/t/data/NC_000007-ribosomal-slippage.gb:59271: HSI ==> HIS
data/bioperl-1.7.7/t/data/NC_000007-ribosomal-slippage.gb:59289: HSI ==> HIS
data/bioperl-1.7.7/t/data/NC_000007-ribosomal-slippage.gb:69061: Ser ==> Set
data/bioperl-1.7.7/t/data/tandem_repeats_finder.noresults:1: writen ==> written
data/bioperl-1.7.7/t/data/tandem_repeats_finder_no_desc.dat:1: writen ==> written
data/bioperl-1.7.7/t/data/taxdump/nodes.dmp:46: ND ==> AND, 2ND
data/bioperl-1.7.7/t/data/taxdump/nodes.dmp:100: OT ==> TO, OF, OR
data/bioperl-1.7.7/t/data/taxdump/nodes.dmp:104: TE ==> THE, BE, WE
data/bioperl-1.7.7/t/data/fastq/test1_sanger.fastq:80: BA ==> BY, BE
data/bioperl-1.7.7/t/data/fastq/test1_sanger.fastq:280: BA ==> BY, BE
data/bioperl-1.7.7/t/data/fastq/test1_sanger.fastq:424: BA ==> BY, BE
data/bioperl-1.7.7/t/data/fastq/test1_sanger.fastq:888: BA ==> BY, BE
data/bioperl-1.7.7/t/Tree/Tree.t:76: isnt ==> isn't
data/bioperl-1.7.7/t/Tree/Tree.t:111: isnt ==> isn't
data/bioperl-1.7.7/t/Tree/Tree.t:119: isnt ==> isn't
data/bioperl-1.7.7/t/Tree/Tree.t:141: lenght ==> length
data/bioperl-1.7.7/t/Tree/Tree.t:191: isnt ==> isn't
data/bioperl-1.7.7/t/Tree/TreeIO.t:28: bootstap ==> bootstrap
data/bioperl-1.7.7/t/Tree/TreeIO.t:213: tre ==> tree
data/bioperl-1.7.7/t/Tree/TreeStatistics.t:57: TBE ==> THE
data/bioperl-1.7.7/t/Tree/TreeIO/nexus.t:22: tre ==> tree
data/bioperl-1.7.7/t/Tree/TreeIO/newick.t:28: bootstap ==> bootstrap
data/bioperl-1.7.7/t/Tools/Alignment/Consed.t:35: isnt ==> isn't
data/bioperl-1.7.7/t/Tools/Alignment/Consed.t:40: isnt ==> isn't
data/bioperl-1.7.7/t/Tools/Alignment/Consed.t:63: doub ==> doubt, daub
data/bioperl-1.7.7/t/SeqIO/embl.t:104: compatability ==> compatibility
data/bioperl-1.7.7/t/SeqIO/fastq.t:357: swith ==> switch
data/bioperl-1.7.7/t/SeqIO/fastq.t:361: swith ==> switch
data/bioperl-1.7.7/t/SeqIO/fastq.t:365: swith ==> switch
data/bioperl-1.7.7/t/SeqIO/fastq.t:369: swith ==> switch
data/bioperl-1.7.7/t/SeqIO/fastq.t:373: swith ==> switch
data/bioperl-1.7.7/t/SeqIO/fastq.t:377: swith ==> switch
data/bioperl-1.7.7/t/SeqIO/fastq.t:381: swith ==> switch
data/bioperl-1.7.7/t/SeqIO/fastq.t:389: swith ==> switch
data/bioperl-1.7.7/t/SeqIO/fastq.t:393: swith ==> switch
data/bioperl-1.7.7/t/SeqIO/Handler.t:641: compatability ==> compatibility
data/bioperl-1.7.7/t/LocalDB/Taxonomy/silva.t:83: explitly ==> explicitly
data/bioperl-1.7.7/t/LocalDB/Taxonomy/greengenes.t:76: explitly ==> explicitly
data/bioperl-1.7.7/t/Ontology/GOterm.t:40: dAA ==> data
data/bioperl-1.7.7/t/Ontology/GOterm.t:45: dAA ==> data
data/bioperl-1.7.7/t/Ontology/IO/go.t:120: childs ==> children, child's
data/bioperl-1.7.7/t/Ontology/IO/go.t:121: childs ==> children, child's
data/bioperl-1.7.7/t/Ontology/IO/go.t:122: childs ==> children, child's
data/bioperl-1.7.7/t/Ontology/IO/go.t:123: childs ==> children, child's
data/bioperl-1.7.7/t/Ontology/IO/go.t:124: childs ==> children, child's
data/bioperl-1.7.7/t/Ontology/IO/go.t:125: childs ==> children, child's
data/bioperl-1.7.7/t/Ontology/IO/go.t:126: childs ==> children, child's
data/bioperl-1.7.7/t/Ontology/IO/go.t:132: childs ==> children, child's
data/bioperl-1.7.7/t/Ontology/IO/go.t:133: childs ==> children, child's
data/bioperl-1.7.7/t/Ontology/IO/go.t:134: childs ==> children, child's
data/bioperl-1.7.7/t/Ontology/IO/go.t:135: childs ==> children, child's
data/bioperl-1.7.7/t/Ontology/IO/go.t:136: childs ==> children, child's
data/bioperl-1.7.7/t/Ontology/IO/go.t:137: childs ==> children, child's
data/bioperl-1.7.7/t/Ontology/IO/go.t:138: childs ==> children, child's
data/bioperl-1.7.7/t/Ontology/IO/go.t:139: childs ==> children, child's
data/bioperl-1.7.7/t/Ontology/IO/go.t:140: childs ==> children, child's
data/bioperl-1.7.7/t/Ontology/IO/go.t:141: childs ==> children, child's
data/bioperl-1.7.7/t/Ontology/IO/go.t:142: childs ==> children, child's
data/bioperl-1.7.7/t/Ontology/IO/go.t:143: childs ==> children, child's
data/bioperl-1.7.7/t/Ontology/IO/go.t:144: childs ==> children, child's
data/bioperl-1.7.7/t/Ontology/IO/go.t:145: childs ==> children, child's
data/bioperl-1.7.7/t/Ontology/IO/go.t:147: childs ==> children, child's
data/bioperl-1.7.7/t/Ontology/IO/go.t:148: childs ==> children, child's
data/bioperl-1.7.7/t/Ontology/IO/go.t:151: childs ==> children, child's
data/bioperl-1.7.7/t/Ontology/IO/go.t:152: childs ==> children, child's
data/bioperl-1.7.7/t/Matrix/IO/psm.t:14: occurrance ==> occurrence
data/bioperl-1.7.7/t/Matrix/IO/psm.t:15: occurrance ==> occurrence
data/bioperl-1.7.7/t/Matrix/IO/psm.t:16: occurrance ==> occurrence
data/bioperl-1.7.7/t/Matrix/IO/psm.t:17: occurrance ==> occurrence
data/bioperl-1.7.7/t/Matrix/IO/psm.t:18: occurrance ==> occurrence
data/bioperl-1.7.7/t/Matrix/IO/psm.t:19: occurrance ==> occurrence
data/bioperl-1.7.7/t/Matrix/IO/psm.t:20: occurrance ==> occurrence
data/bioperl-1.7.7/t/Matrix/IO/psm.t:21: occurrance ==> occurrence
data/bioperl-1.7.7/t/Matrix/IO/psm.t:22: occurrance ==> occurrence
data/bioperl-1.7.7/t/Matrix/IO/psm.t:23: occurrance ==> occurrence
data/bioperl-1.7.7/t/Matrix/IO/psm.t:24: occurrance ==> occurrence
data/bioperl-1.7.7/t/Matrix/IO/psm.t:25: occurrance ==> occurrence
data/bioperl-1.7.7/t/Matrix/IO/psm.t:26: occurrance ==> occurrence
data/bioperl-1.7.7/t/Matrix/IO/psm.t:27: occurrance ==> occurrence
data/bioperl-1.7.7/t/Matrix/IO/psm.t:28: occurrance ==> occurrence
data/bioperl-1.7.7/t/Matrix/IO/psm.t:29: occurrance ==> occurrence
data/bioperl-1.7.7/t/Matrix/IO/psm.t:30: occurrance ==> occurrence
data/bioperl-1.7.7/t/SeqFeature/Range.t:115: implemention ==> implementation
data/bioperl-1.7.7/t/SeqFeature/Location.t:254: coodinate ==> coordinate
data/bioperl-1.7.7/t/SeqFeature/Location.t:262: coodinate ==> coordinate
data/bioperl-1.7.7/t/SeqFeature/Location.t:270: coodinate ==> coordinate
data/bioperl-1.7.7/t/SeqFeature/Location.t:278: coodinate ==> coordinate
data/bioperl-1.7.7/t/SeqFeature/Location.t:286: coodinate ==> coordinate
data/bioperl-1.7.7/t/RemoteDB/Taxonomy.t:136: explitly ==> explicitly
data/bioperl-1.7.7/t/RemoteDB/Taxonomy.t:373: isnt ==> isn't
data/bioperl-1.7.7/t/RemoteDB/Taxonomy.t:390: isnt ==> isn't
data/bioperl-1.7.7/t/SeqTools/SeqUtils.t:41: Ser ==> Set
data/bioperl-1.7.7/t/SeqTools/SeqUtils.t:45: Ser ==> Set
data/bioperl-1.7.7/t/SeqTools/SeqUtils.t:217: transfered ==> transferred
data/bioperl-1.7.7/t/SeqTools/SeqUtils.t:218: transfered ==> transferred
data/bioperl-1.7.7/t/SeqTools/SeqUtils.t:305: isnt ==> isn't
data/bioperl-1.7.7/t/SeqTools/CodonTable.t:132: ACN ==> CAN, ACNE
data/bioperl-1.7.7/t/SeqTools/CodonTable.t:132: sER ==> set
data/bioperl-1.7.7/t/Annotation/Annotation.t:300: rquired ==> required
data/bioperl-1.7.7/t/Annotation/Annotation.t:326: isnt ==> isn't
data/bioperl-1.7.7/t/Annotation/Annotation.t:334: isnt ==> isn't
data/bioperl-1.7.7/t/Annotation/Annotation.t:349: isnt ==> isn't
data/bioperl-1.7.7/lib/Bio/Seq.pm:236: standarized ==> standardized
data/bioperl-1.7.7/lib/Bio/Range.pm:38: greather ==> greater
data/bioperl-1.7.7/lib/Bio/Range.pm:194: co-ordinate ==> coordinate
data/bioperl-1.7.7/lib/Bio/Range.pm:196: co-ordinate ==> coordinate
data/bioperl-1.7.7/lib/Bio/Range.pm:197: co-ordinate ==> coordinate
data/bioperl-1.7.7/lib/Bio/Range.pm:215: co-ordinate ==> coordinate
data/bioperl-1.7.7/lib/Bio/Range.pm:217: co-ordinate ==> coordinate
data/bioperl-1.7.7/lib/Bio/Range.pm:218: co-ordinate ==> coordinate
data/bioperl-1.7.7/lib/Bio/Taxon.pm:375: explictely ==> explicitly
data/bioperl-1.7.7/lib/Bio/TreeIO.pm:311: parm ==> param, pram, parma
data/bioperl-1.7.7/lib/Bio/RangeI.pm:312: contex ==> context
data/bioperl-1.7.7/lib/Bio/RangeI.pm:396: contex ==> context
data/bioperl-1.7.7/lib/Bio/Species.pm:128: surplanted ==> supplanted
data/bioperl-1.7.7/lib/Bio/SeqUtils.pm:648: paramters ==> parameters
data/bioperl-1.7.7/lib/Bio/SeqUtils.pm:737: paramters ==> parameters
data/bioperl-1.7.7/lib/Bio/SeqUtils.pm:866: fragmnet ==> fragment
data/bioperl-1.7.7/lib/Bio/SeqUtils.pm:1343: obejct ==> object
data/bioperl-1.7.7/lib/Bio/SearchIO.pm:322: attatch ==> attach
data/bioperl-1.7.7/lib/Bio/SearchIO.pm:701: earch ==> search, each
data/bioperl-1.7.7/lib/Bio/AnalysisI.pm:330: prameters ==> parameters
data/bioperl-1.7.7/lib/Bio/OntologyIO.pm:23: MERCHANTIBILITY ==> MERCHANTABILITY
data/bioperl-1.7.7/lib/Bio/SimpleAlign.pm:209: hashs ==> hashes
data/bioperl-1.7.7/lib/Bio/SimpleAlign.pm:384: remoce ==> remove
data/bioperl-1.7.7/lib/Bio/SimpleAlign.pm:541: whoes ==> whose
data/bioperl-1.7.7/lib/Bio/SimpleAlign.pm:1182: aligment ==> alignment
data/bioperl-1.7.7/lib/Bio/SimpleAlign.pm:1213: aligment ==> alignment
data/bioperl-1.7.7/lib/Bio/SimpleAlign.pm:2654: aligment ==> alignment
data/bioperl-1.7.7/lib/Bio/SimpleAlign.pm:3006: compres ==> compress, compares
data/bioperl-1.7.7/lib/Bio/SimpleAlign.pm:3009: compres ==> compress, compares
data/bioperl-1.7.7/lib/Bio/SimpleAlign.pm:3009: compres ==> compress, compares
data/bioperl-1.7.7/lib/Bio/SimpleAlign.pm:3009: compres ==> compress, compares
data/bioperl-1.7.7/lib/Bio/SeqFeatureI.pm:514: programable ==> programmable
data/bioperl-1.7.7/lib/Bio/PullParserI.pm:395: dependancy ==> dependency
data/bioperl-1.7.7/lib/Bio/LocatableSeq.pm:436: aligment ==> alignment
data/bioperl-1.7.7/lib/Bio/FeatureHolderI.pm:121: qualifer ==> qualifier
data/bioperl-1.7.7/lib/Bio/FeatureHolderI.pm:127: accomodated ==> accommodated
data/bioperl-1.7.7/lib/Bio/ParameterBaseI.pm:118: indiviual ==> individual
data/bioperl-1.7.7/lib/Bio/SimpleAnalysisI.pm:162: metod ==> method
data/bioperl-1.7.7/lib/Bio/SimpleAnalysisI.pm:196: prameters ==> parameters
data/bioperl-1.7.7/lib/Bio/AnnotationCollectionI.pm:80: implict ==> implicit
data/bioperl-1.7.7/lib/Bio/Root/IO.pm:642: modifed ==> modified
data/bioperl-1.7.7/lib/Bio/Root/RootI.pm:435: evaulated ==> evaluated
data/bioperl-1.7.7/lib/Bio/Root/RootI.pm:594: preceed ==> precede, proceed
data/bioperl-1.7.7/lib/Bio/Root/Utilities.pm:362: compatibile ==> compatible
data/bioperl-1.7.7/lib/Bio/Root/Utilities.pm:486: compatibile ==> compatible
data/bioperl-1.7.7/lib/Bio/Root/Utilities.pm:888: arguemnts ==> arguments
data/bioperl-1.7.7/lib/Bio/Root/Utilities.pm:941: represenation ==> representation
data/bioperl-1.7.7/lib/Bio/Root/Utilities.pm:1062: existant ==> existent
data/bioperl-1.7.7/lib/Bio/DB/Qual.pm:317: begining ==> beginning
data/bioperl-1.7.7/lib/Bio/DB/Qual.pm:319: begining ==> beginning
data/bioperl-1.7.7/lib/Bio/DB/WebDBSeqI.pm:365: oject ==> object
data/bioperl-1.7.7/lib/Bio/DB/WebDBSeqI.pm:775: cloes ==> close
data/bioperl-1.7.7/lib/Bio/DB/IndexedBase.pm:101: tieing ==> tying
data/bioperl-1.7.7/lib/Bio/DB/InMemoryCache.pm:86: AGRESSION ==> AGGRESSION
data/bioperl-1.7.7/lib/Bio/DB/Flat/BinarySearch.pm:758: Cant' ==> Can't
data/bioperl-1.7.7/lib/Bio/DB/Query/WebQuery.pm:17: queryies ==> queries
data/bioperl-1.7.7/lib/Bio/Seq/Meta.pm:278: guarantied ==> guaranteed
data/bioperl-1.7.7/lib/Bio/Seq/Meta.pm:369: guarantied ==> guaranteed
data/bioperl-1.7.7/lib/Bio/Seq/Meta.pm:400: guarantied ==> guaranteed
data/bioperl-1.7.7/lib/Bio/Seq/Meta.pm:418: guarantied ==> guaranteed
data/bioperl-1.7.7/lib/Bio/Seq/Meta.pm:435: guarantied ==> guaranteed
data/bioperl-1.7.7/lib/Bio/Seq/Meta.pm:494: guarantied ==> guaranteed
data/bioperl-1.7.7/lib/Bio/Seq/Meta.pm:513: guarantied ==> guaranteed
data/bioperl-1.7.7/lib/Bio/Seq/QualI.pm:51: consideres ==> considered, considers
data/bioperl-1.7.7/lib/Bio/Seq/QualI.pm:186: convience ==> convince, convenience
data/bioperl-1.7.7/lib/Bio/Seq/MetaI.pm:185: guarantied ==> guaranteed
data/bioperl-1.7.7/lib/Bio/Seq/MetaI.pm:202: guarantied ==> guaranteed
data/bioperl-1.7.7/lib/Bio/Seq/MetaI.pm:229: guarantied ==> guaranteed
data/bioperl-1.7.7/lib/Bio/Seq/MetaI.pm:261: guarantied ==> guaranteed
data/bioperl-1.7.7/lib/Bio/Seq/MetaI.pm:277: guarantied ==> guaranteed
data/bioperl-1.7.7/lib/Bio/Seq/MetaI.pm:293: guarantied ==> guaranteed
data/bioperl-1.7.7/lib/Bio/Seq/MetaI.pm:309: guarantied ==> guaranteed
data/bioperl-1.7.7/lib/Bio/Seq/MetaI.pm:326: guarantied ==> guaranteed
data/bioperl-1.7.7/lib/Bio/Seq/RichSeq.pm:35: implementes ==> implements
data/bioperl-1.7.7/lib/Bio/Seq/Quality.pm:222: guarantied ==> guaranteed
data/bioperl-1.7.7/lib/Bio/Seq/Quality.pm:337: guarantied ==> guaranteed
data/bioperl-1.7.7/lib/Bio/Seq/Quality.pm:643: Mimimum ==> Minimum
data/bioperl-1.7.7/lib/Bio/Seq/SeqBuilder.pm:23: MERCHANTIBILITY ==> MERCHANTABILITY
data/bioperl-1.7.7/lib/Bio/Seq/PrimaryQual.pm:286: convience ==> convince, convenience
data/bioperl-1.7.7/lib/Bio/Seq/SequenceTrace.pm:268: postition ==> position
data/bioperl-1.7.7/lib/Bio/Seq/SequenceTrace.pm:320: convience ==> convince, convenience
data/bioperl-1.7.7/lib/Bio/Seq/SequenceTrace.pm:445: imbedded ==> embedded
data/bioperl-1.7.7/lib/Bio/Seq/SequenceTrace.pm:447: imbedded ==> embedded
data/bioperl-1.7.7/lib/Bio/Seq/SequenceTrace.pm:449: imbedded ==> embedded
data/bioperl-1.7.7/lib/Bio/Seq/SequenceTrace.pm:474: imbedded ==> embedded
data/bioperl-1.7.7/lib/Bio/Seq/SequenceTrace.pm:479: imbedded ==> embedded
data/bioperl-1.7.7/lib/Bio/Seq/SequenceTrace.pm:523: imbedded ==> embedded
data/bioperl-1.7.7/lib/Bio/Seq/SequenceTrace.pm:525: imbedded ==> embedded
data/bioperl-1.7.7/lib/Bio/Seq/SequenceTrace.pm:545: imbedded ==> embedded
data/bioperl-1.7.7/lib/Bio/Seq/SequenceTrace.pm:547: imbedded ==> embedded
data/bioperl-1.7.7/lib/Bio/Seq/BaseSeqProcessor.pm:23: MERCHANTIBILITY ==> MERCHANTABILITY
data/bioperl-1.7.7/lib/Bio/Seq/Meta/Array.pm:164: should't ==> shouldn't
data/bioperl-1.7.7/lib/Bio/Seq/Meta/Array.pm:220: guarantied ==> guaranteed
data/bioperl-1.7.7/lib/Bio/Seq/Meta/Array.pm:316: guarantied ==> guaranteed
data/bioperl-1.7.7/lib/Bio/Seq/Meta/Array.pm:348: guarantied ==> guaranteed
data/bioperl-1.7.7/lib/Bio/Seq/Meta/Array.pm:366: guarantied ==> guaranteed
data/bioperl-1.7.7/lib/Bio/Seq/Meta/Array.pm:383: guarantied ==> guaranteed
data/bioperl-1.7.7/lib/Bio/Seq/Meta/Array.pm:455: guarantied ==> guaranteed
data/bioperl-1.7.7/lib/Bio/Seq/Meta/Array.pm:474: guarantied ==> guaranteed
data/bioperl-1.7.7/lib/Bio/Tree/Tree.pm:140: nodel ==> model, nodal
data/bioperl-1.7.7/lib/Bio/Tree/Tree.pm:162: nodel ==> model, nodal
data/bioperl-1.7.7/lib/Bio/Tree/Node.pm:22: nodeL ==> model, nodal
data/bioperl-1.7.7/lib/Bio/Tree/Node.pm:26: nodeL ==> model, nodal
data/bioperl-1.7.7/lib/Bio/Tree/NodeNHX.pm:22: nodeL ==> model, nodal
data/bioperl-1.7.7/lib/Bio/Tree/NodeNHX.pm:26: nodeL ==> model, nodal
data/bioperl-1.7.7/lib/Bio/Tree/Statistics.pm:155: TBE ==> THE
data/bioperl-1.7.7/lib/Bio/Tree/Statistics.pm:221: TBE ==> THE
data/bioperl-1.7.7/lib/Bio/Tree/Statistics.pm:230: TBE ==> THE
data/bioperl-1.7.7/lib/Bio/Tree/Statistics.pm:382: chararacter ==> character
data/bioperl-1.7.7/lib/Bio/Tree/Statistics.pm:521: decendants ==> descendants
data/bioperl-1.7.7/lib/Bio/Tree/Statistics.pm:901: maximim ==> maximum
data/bioperl-1.7.7/lib/Bio/Tree/TreeFunctionsI.pm:122: boostrap ==> bootstrap
data/bioperl-1.7.7/lib/Bio/Tree/TreeFunctionsI.pm:704: artifical ==> artificial
data/bioperl-1.7.7/lib/Bio/Tree/TreeFunctionsI.pm:721: artifical ==> artificial
data/bioperl-1.7.7/lib/Bio/Tree/AnnotatableNode.pm:21: nodeL ==> model, nodal
data/bioperl-1.7.7/lib/Bio/Tree/AnnotatableNode.pm:25: nodeL ==> model, nodal
data/bioperl-1.7.7/lib/Bio/Tree/DistanceFactory.pm:489: seqences ==> sequences
data/bioperl-1.7.7/lib/Bio/Tools/GFF.pm:543: necessay ==> necessary
data/bioperl-1.7.7/lib/Bio/Tools/GFF.pm:546: thorugh ==> through, thorough
data/bioperl-1.7.7/lib/Bio/Tools/Blat.pm:124: preceeding ==> preceding, proceeding
data/bioperl-1.7.7/lib/Bio/Tools/Blat.pm:160: aligment ==> alignment
data/bioperl-1.7.7/lib/Bio/Tools/Genscan.pm:468: traling ==> trailing, trialing
data/bioperl-1.7.7/lib/Bio/Tools/Fgenesh.pm:494: traling ==> trailing, trialing
data/bioperl-1.7.7/lib/Bio/Tools/Glimmer.pm:412: overriden ==> overridden
data/bioperl-1.7.7/lib/Bio/Tools/Glimmer.pm:420: identifer ==> identifier
data/bioperl-1.7.7/lib/Bio/Tools/TargetP.pm:44: vesion ==> version
data/bioperl-1.7.7/lib/Bio/Tools/TargetP.pm:422: Arguemnts ==> Arguments
data/bioperl-1.7.7/lib/Bio/Tools/ECnumber.pm:18: MERCHANTIBILITY ==> MERCHANTABILITY
data/bioperl-1.7.7/lib/Bio/Tools/Genemark.pm:301: instatiate ==> instantiate
data/bioperl-1.7.7/lib/Bio/Tools/Genemark.pm:523: traling ==> trailing, trialing
data/bioperl-1.7.7/lib/Bio/Tools/SeqStats.pm:756: caculated ==> calculated
data/bioperl-1.7.7/lib/Bio/Tools/SeqWords.pm:52: protential ==> potential
data/bioperl-1.7.7/lib/Bio/Tools/Sigcleave.pm:260: aproaches ==> approaches
data/bioperl-1.7.7/lib/Bio/Tools/SeqPattern.pm:442: thses ==> these
data/bioperl-1.7.7/lib/Bio/Tools/CodonTable.pm:113: Ser ==> Set
data/bioperl-1.7.7/lib/Bio/Tools/CodonTable.pm:411: imput ==> input
data/bioperl-1.7.7/lib/Bio/Tools/Genomewise.pm:189: Unparseable ==> Unparsable
data/bioperl-1.7.7/lib/Bio/Tools/Est2Genome.pm:286: thats ==> that's
data/bioperl-1.7.7/lib/Bio/Tools/GuessSeqFormat.pm:721: apparantly ==> apparently
data/bioperl-1.7.7/lib/Bio/Tools/GuessSeqFormat.pm:803: broswer ==> browser
data/bioperl-1.7.7/lib/Bio/Tools/TandemRepeatsFinder.pm:223: Verion ==> Version
data/bioperl-1.7.7/lib/Bio/Tools/Sim4/Results.pm:224: bascially ==> basically
data/bioperl-1.7.7/lib/Bio/Tools/Phylo/Molphy.pm:37: probabilty ==> probability
data/bioperl-1.7.7/lib/Bio/Tools/Phylo/Molphy/Result.pm:39: probabilty ==> probability
data/bioperl-1.7.7/lib/Bio/Tools/Primer/Pair.pm:33: principly ==> principally
data/bioperl-1.7.7/lib/Bio/Tools/Primer/Feature.pm:39: principly ==> principally
data/bioperl-1.7.7/lib/Bio/Tools/Primer/Feature.pm:123: paramter ==> parameter
data/bioperl-1.7.7/lib/Bio/Tools/Spidey/Results.pm:186: bascially ==> basically
data/bioperl-1.7.7/lib/Bio/Tools/Run/Analysis.pm:685: contex ==> context
data/bioperl-1.7.7/lib/Bio/Tools/Run/WrapperBase/CommandExts.pm:434: parms ==> params, prams
data/bioperl-1.7.7/lib/Bio/Tools/Run/WrapperBase/CommandExts.pm:988: dum ==> dumb
data/bioperl-1.7.7/lib/Bio/Tools/Run/WrapperBase/CommandExts.pm:989: dum ==> dumb
data/bioperl-1.7.7/lib/Bio/Tools/Run/WrapperBase/CommandExts.pm:1242: parms ==> params, prams
data/bioperl-1.7.7/lib/Bio/Tools/Alignment/Trim.pm:161: desig ==> design
data/bioperl-1.7.7/lib/Bio/Tools/Alignment/Trim.pm:162: desig ==> design
data/bioperl-1.7.7/lib/Bio/Tools/Alignment/Trim.pm:177: desig ==> design
data/bioperl-1.7.7/lib/Bio/Tools/Alignment/Trim.pm:178: desig ==> design
data/bioperl-1.7.7/lib/Bio/Tools/Alignment/Consed.pm:1064: somethimes ==> sometimes
data/bioperl-1.7.7/lib/Bio/Tools/Alignment/Consed.pm:1166: Ned ==> Need
data/bioperl-1.7.7/lib/Bio/Tools/Alignment/Consed.pm:1267: doub ==> doubt, daub
data/bioperl-1.7.7/lib/Bio/Tools/Alignment/Consed.pm:1308: doub ==> doubt, daub
data/bioperl-1.7.7/lib/Bio/Tools/Prediction/Exon.pm:29: useable ==> usable
data/bioperl-1.7.7/lib/Bio/Tools/EMBOSS/Palindrome.pm:38: wil ==> will, well
data/bioperl-1.7.7/lib/Bio/Tools/Signalp/ExtendedSignalp.pm:438: Hiden ==> Hidden
data/bioperl-1.7.7/lib/Bio/Tools/SeqPattern/Backtranslate.pm:319: WHN ==> WHEN
data/bioperl-1.7.7/lib/Bio/Tools/SeqPattern/Backtranslate.pm:367: ADN ==> AND
data/bioperl-1.7.7/lib/Bio/Tools/SeqPattern/Backtranslate.pm:368: THN ==> THEN
data/bioperl-1.7.7/lib/Bio/Tools/SeqPattern/Backtranslate.pm:372: HDA ==> HAD
data/bioperl-1.7.7/lib/Bio/Tools/SeqPattern/Backtranslate.pm:393: WAN ==> WANT
data/bioperl-1.7.7/lib/Bio/Tools/SeqPattern/Backtranslate.pm:396: ANS ==> AND
data/bioperl-1.7.7/lib/Bio/Tools/SeqPattern/Backtranslate.pm:404: HSA ==> HAS
data/bioperl-1.7.7/lib/Bio/Tools/SeqPattern/Backtranslate.pm:407: VAS ==> WAS
data/bioperl-1.7.7/lib/Bio/Tools/SeqPattern/Backtranslate.pm:414: SAV ==> SAVE
data/bioperl-1.7.7/lib/Bio/Tools/SeqPattern/Backtranslate.pm:416: WTH ==> WITH
data/bioperl-1.7.7/lib/Bio/Tools/SeqPattern/Backtranslate.pm:424: THS ==> THE, THIS
data/bioperl-1.7.7/lib/Bio/Tools/SeqPattern/Backtranslate.pm:424: THW ==> THE, THAW
data/bioperl-1.7.7/lib/Bio/Tools/SeqPattern/Backtranslate.pm:440: WYA ==> WAY
data/bioperl-1.7.7/lib/Bio/Tools/SeqPattern/Backtranslate.pm:445: AKS ==> ASK
data/bioperl-1.7.7/lib/Bio/Tools/SeqPattern/Backtranslate.pm:446: ACN ==> CAN, ACNE
data/bioperl-1.7.7/lib/Bio/Tools/SeqPattern/Backtranslate.pm:447: CNA ==> CAN
data/bioperl-1.7.7/lib/Bio/Tools/SeqPattern/Backtranslate.pm:454: DAA ==> DATA
data/bioperl-1.7.7/lib/Bio/Tools/SeqPattern/Backtranslate.pm:455: HAA ==> HAS
data/bioperl-1.7.7/lib/Bio/Tools/SeqPattern/Backtranslate.pm:461: THA ==> THAN, THAT, THE
data/bioperl-1.7.7/lib/Bio/Tools/SeqPattern/Backtranslate.pm:461: THT ==> THE, THAT
data/bioperl-1.7.7/lib/Bio/SeqIO/ace.pm:172: charachers ==> characters
data/bioperl-1.7.7/lib/Bio/SeqIO/phd.pm:171: nane ==> name
data/bioperl-1.7.7/lib/Bio/SeqIO/embl.pm:1213: databse ==> database
data/bioperl-1.7.7/lib/Bio/SeqIO/embl.pm:1214: databse ==> database
data/bioperl-1.7.7/lib/Bio/SeqIO/embl.pm:1247: databse ==> database
data/bioperl-1.7.7/lib/Bio/SeqIO/embl.pm:1248: databse ==> database
data/bioperl-1.7.7/lib/Bio/SeqIO/embl.pm:1299: arrray ==> array
data/bioperl-1.7.7/lib/Bio/SeqIO/embl.pm:1308: preceeded ==> preceded, proceeded
data/bioperl-1.7.7/lib/Bio/SeqIO/embl.pm:1309: preceeded ==> preceded, proceeded
data/bioperl-1.7.7/lib/Bio/SeqIO/tigr.pm:464: ingnored ==> ignored
data/bioperl-1.7.7/lib/Bio/SeqIO/tigr.pm:794: alwasy ==> always
data/bioperl-1.7.7/lib/Bio/SeqIO/bsml.pm:241: neccesary ==> necessary
data/bioperl-1.7.7/lib/Bio/SeqIO/bsml.pm:468: Wheras ==> Whereas
data/bioperl-1.7.7/lib/Bio/SeqIO/bsml.pm:1362: Coppied ==> Copied
data/bioperl-1.7.7/lib/Bio/SeqIO/bsml.pm:1381: retruned ==> returned
data/bioperl-1.7.7/lib/Bio/SeqIO/bsml.pm:1415: preceed ==> precede, proceed
data/bioperl-1.7.7/lib/Bio/SeqIO/bsml.pm:1440: non-existant ==> non-existent
data/bioperl-1.7.7/lib/Bio/SeqIO/table.pm:15: MERCHANTIBILITY ==> MERCHANTABILITY
data/bioperl-1.7.7/lib/Bio/SeqIO/fasta.pm:152: incase ==> in case
data/bioperl-1.7.7/lib/Bio/SeqIO/seqxml.pm:347: crossreferences ==> cross-references
data/bioperl-1.7.7/lib/Bio/SeqIO/tinyseq.pm:31: analgous ==> analogous
data/bioperl-1.7.7/lib/Bio/SeqIO/genbank.pm:1477: nnumber ==> number
data/bioperl-1.7.7/lib/Bio/SeqIO/genbank.pm:1514: unconvential ==> unconventional
data/bioperl-1.7.7/lib/Bio/SeqIO/metafasta.pm:153: incase ==> in case
data/bioperl-1.7.7/lib/Bio/SeqIO/locuslink.pm:23: MERCHANTIBILITY ==> MERCHANTABILITY
data/bioperl-1.7.7/lib/Bio/SeqIO/swissdriver.pm:185: qualifer ==> qualifier
data/bioperl-1.7.7/lib/Bio/SeqIO/game/gameWriter.pm:99: elemant ==> element
data/bioperl-1.7.7/lib/Bio/SeqIO/game/gameWriter.pm:101: seqeunce ==> sequence
data/bioperl-1.7.7/lib/Bio/SeqIO/tinyseq/tinyseqHandler.pm:31: analgous ==> analogous
data/bioperl-1.7.7/lib/Bio/SeqIO/Handler/GenericRichSeqHandler.pm:824: intergration ==> integration
data/bioperl-1.7.7/lib/Bio/SeqIO/Handler/GenericRichSeqHandler.pm:1011: databse ==> database
data/bioperl-1.7.7/lib/Bio/SeqIO/Handler/GenericRichSeqHandler.pm:1012: databse ==> database
data/bioperl-1.7.7/lib/Bio/Matrix/Generic.pm:509: unqiue ==> unique
data/bioperl-1.7.7/lib/Bio/Matrix/Generic.pm:599: unqiue ==> unique
data/bioperl-1.7.7/lib/Bio/Matrix/PSM/Psm.pm:35: memmory ==> memory
data/bioperl-1.7.7/lib/Bio/Matrix/PSM/Psm.pm:66: arrray ==> array
data/bioperl-1.7.7/lib/Bio/Matrix/PSM/PsmI.pm:34: memmory ==> memory
data/bioperl-1.7.7/lib/Bio/Matrix/PSM/PsmI.pm:65: arrray ==> array
data/bioperl-1.7.7/lib/Bio/Matrix/PSM/ProtPsm.pm:53: arrray ==> array
data/bioperl-1.7.7/lib/Bio/Matrix/PSM/ProtPsm.pm:202: epty ==> empty
data/bioperl-1.7.7/lib/Bio/Matrix/PSM/SiteMatrix.pm:37: frequenct ==> frequency, frequent
data/bioperl-1.7.7/lib/Bio/Matrix/PSM/SiteMatrix.pm:45: frequences ==> frequencies
data/bioperl-1.7.7/lib/Bio/Matrix/PSM/SiteMatrix.pm:194: frequences ==> frequencies
data/bioperl-1.7.7/lib/Bio/Matrix/PSM/SiteMatrix.pm:278: frequences ==> frequencies
data/bioperl-1.7.7/lib/Bio/Matrix/PSM/SiteMatrix.pm:365: probabilty ==> probability
data/bioperl-1.7.7/lib/Bio/Matrix/PSM/ProtMatrix.pm:267: arrary ==> array
data/bioperl-1.7.7/lib/Bio/Matrix/PSM/ProtMatrix.pm:452: thresold ==> threshold
data/bioperl-1.7.7/lib/Bio/Matrix/PSM/ProtMatrix.pm:452: outisde ==> outside
data/bioperl-1.7.7/lib/Bio/Matrix/PSM/SiteMatrixI.pm:144: probabilty ==> probability
data/bioperl-1.7.7/lib/Bio/Matrix/PSM/InstanceSite.pm:96: isntance ==> instance
data/bioperl-1.7.7/lib/Bio/Matrix/PSM/InstanceSite.pm:306: frane ==> frame
data/bioperl-1.7.7/lib/Bio/Matrix/PSM/IO/mast.pm:263: occurrance ==> occurrence
data/bioperl-1.7.7/lib/Bio/Matrix/PSM/IO/transfac.pm:115: Begining ==> Beginning
data/bioperl-1.7.7/lib/Bio/Matrix/PSM/IO/transfac.pm:129: BA ==> BY, BE
data/bioperl-1.7.7/lib/Bio/Matrix/PSM/IO/transfac.pm:130: ba ==> by, be
data/bioperl-1.7.7/lib/Bio/Matrix/PSM/IO/transfac.pm:131: ba ==> by, be
data/bioperl-1.7.7/lib/Bio/AlignIO/maf.pm:137: aline ==> align, a line, line, saline
data/bioperl-1.7.7/lib/Bio/AlignIO/maf.pm:145: aline ==> align, a line, line, saline
data/bioperl-1.7.7/lib/Bio/AlignIO/maf.pm:156: aline ==> align, a line, line, saline
data/bioperl-1.7.7/lib/Bio/AlignIO/maf.pm:158: aline ==> align, a line, line, saline
data/bioperl-1.7.7/lib/Bio/AlignIO/nexus.pm:205: compatability ==> compatibility
data/bioperl-1.7.7/lib/Bio/AlignIO/nexus.pm:207: compatability ==> compatibility
data/bioperl-1.7.7/lib/Bio/AlignIO/nexus.pm:406: incase ==> in case
data/bioperl-1.7.7/lib/Bio/AlignIO/bl2seq.pm:10: ist ==> is, it, its, it's, sit, list
data/bioperl-1.7.7/lib/Bio/AlignIO/largemultifasta.pm:152: readed ==> read, readd, readded
data/bioperl-1.7.7/lib/Bio/Index/EMBL.pm:51: funtionality ==> functionality
data/bioperl-1.7.7/lib/Bio/Index/EMBL.pm:181: Assummes ==> Assumes
data/bioperl-1.7.7/lib/Bio/Index/Qual.pm:49: funtionality ==> functionality
data/bioperl-1.7.7/lib/Bio/Index/Fastq.pm:49: funtionality ==> functionality
data/bioperl-1.7.7/lib/Bio/Index/Blast.pm:380: approprite ==> appropriate
data/bioperl-1.7.7/lib/Bio/Index/Blast.pm:496: sting ==> string
data/bioperl-1.7.7/lib/Bio/Index/Fasta.pm:51: funtionality ==> functionality
data/bioperl-1.7.7/lib/Bio/Index/Abstract.pm:257: approprite ==> appropriate
data/bioperl-1.7.7/lib/Bio/Index/Abstract.pm:316: curent ==> current
data/bioperl-1.7.7/lib/Bio/Index/Abstract.pm:337: curent ==> current
data/bioperl-1.7.7/lib/Bio/Index/Abstract.pm:787: sting ==> string
data/bioperl-1.7.7/lib/Bio/Index/Swissprot.pm:103: ist ==> is, it, its, it's, sit, list
data/bioperl-1.7.7/lib/Bio/Index/SwissPfam.pm:48: funtionality ==> functionality
data/bioperl-1.7.7/lib/Bio/Index/BlastTable.pm:330: approprite ==> appropriate
data/bioperl-1.7.7/lib/Bio/Index/BlastTable.pm:446: sting ==> string
data/bioperl-1.7.7/lib/Bio/SearchIO/psl.pm:521: Convience ==> Convince, convenience
data/bioperl-1.7.7/lib/Bio/SearchIO/axt.pm:340: Convience ==> Convince, convenience
data/bioperl-1.7.7/lib/Bio/SearchIO/waba.pm:365: Convience ==> Convince, convenience
data/bioperl-1.7.7/lib/Bio/SearchIO/wise.pm:334: Convience ==> Convince, convenience
data/bioperl-1.7.7/lib/Bio/SearchIO/sim4.pm:482: Convience ==> Convince, convenience
data/bioperl-1.7.7/lib/Bio/SearchIO/blast.pm:2487: discrepencies ==> discrepancies
data/bioperl-1.7.7/lib/Bio/SearchIO/blast.pm:2564: resonable ==> reasonable
data/bioperl-1.7.7/lib/Bio/SearchIO/fasta.pm:1313: Convience ==> Convince, convenience
data/bioperl-1.7.7/lib/Bio/SearchIO/infernal.pm:1160: unmodifed ==> unmodified
data/bioperl-1.7.7/lib/Bio/SearchIO/megablast.pm:375: Convience ==> Convince, convenience
data/bioperl-1.7.7/lib/Bio/SearchIO/exonerate.pm:278: lenghts ==> lengths
data/bioperl-1.7.7/lib/Bio/SearchIO/exonerate.pm:387: lenghts ==> lengths
data/bioperl-1.7.7/lib/Bio/SearchIO/exonerate.pm:623: Convience ==> Convince, convenience
data/bioperl-1.7.7/lib/Bio/SearchIO/blasttable.pm:393: Convience ==> Convince, convenience
data/bioperl-1.7.7/lib/Bio/SearchIO/Writer/GbrowseGFF.pm:112: nIn ==> inn, min, bin, nine
data/bioperl-1.7.7/lib/Bio/SearchIO/Writer/TextResultWriter.pm:525: sting ==> string
data/bioperl-1.7.7/lib/Bio/SearchIO/Writer/HTMLResultWriter.pm:469: sav ==> save
data/bioperl-1.7.7/lib/Bio/SearchIO/Writer/HTMLResultWriter.pm:470: sav ==> save
data/bioperl-1.7.7/lib/Bio/SearchIO/Writer/HTMLResultWriter.pm:481: sav ==> save
data/bioperl-1.7.7/lib/Bio/SearchIO/Writer/HTMLResultWriter.pm:688: sting ==> string
data/bioperl-1.7.7/lib/Bio/Align/AlignI.pm:437: attibutes ==> attributes
data/bioperl-1.7.7/lib/Bio/Align/DNAStatistics.pm:1231: Useage ==> Usage
data/bioperl-1.7.7/lib/Bio/Align/DNAStatistics.pm:1265: Useage ==> Usage
data/bioperl-1.7.7/lib/Bio/Align/DNAStatistics.pm:1293: Useage ==> Usage
data/bioperl-1.7.7/lib/Bio/Align/DNAStatistics.pm:1418: comparisin ==> comparison
data/bioperl-1.7.7/lib/Bio/Align/DNAStatistics.pm:1501: beeing ==> being, been
data/bioperl-1.7.7/lib/Bio/Align/PairwiseStatistics.pm:117: nd ==> and, 2nd
data/bioperl-1.7.7/lib/Bio/Align/PairwiseStatistics.pm:156: nd ==> and, 2nd
data/bioperl-1.7.7/lib/Bio/Ontology/Term.pm:18: MERCHANTIBILITY ==> MERCHANTABILITY
data/bioperl-1.7.7/lib/Bio/Ontology/Path.pm:18: MERCHANTIBILITY ==> MERCHANTABILITY
data/bioperl-1.7.7/lib/Bio/Ontology/TermI.pm:18: MERCHANTIBILITY ==> MERCHANTABILITY
data/bioperl-1.7.7/lib/Bio/Ontology/PathI.pm:18: MERCHANTIBILITY ==> MERCHANTABILITY
data/bioperl-1.7.7/lib/Bio/Ontology/GOterm.pm:18: MERCHANTIBILITY ==> MERCHANTABILITY
data/bioperl-1.7.7/lib/Bio/Ontology/Ontology.pm:23: MERCHANTIBILITY ==> MERCHANTABILITY
data/bioperl-1.7.7/lib/Bio/Ontology/OntologyI.pm:23: MERCHANTIBILITY ==> MERCHANTABILITY
data/bioperl-1.7.7/lib/Bio/Ontology/TermFactory.pm:23: MERCHANTIBILITY ==> MERCHANTABILITY
data/bioperl-1.7.7/lib/Bio/Ontology/Relationship.pm:18: MERCHANTIBILITY ==> MERCHANTABILITY
data/bioperl-1.7.7/lib/Bio/Ontology/InterProTerm.pm:19: MERCHANTIBILITY ==> MERCHANTABILITY
data/bioperl-1.7.7/lib/Bio/Ontology/RelationshipI.pm:18: MERCHANTIBILITY ==> MERCHANTABILITY
data/bioperl-1.7.7/lib/Bio/Ontology/OntologyEngineI.pm:18: MERCHANTIBILITY ==> MERCHANTABILITY
data/bioperl-1.7.7/lib/Bio/Ontology/OntologyEngineI.pm:38: queriable ==> queryable
data/bioperl-1.7.7/lib/Bio/Ontology/RelationshipType.pm:18: MERCHANTIBILITY ==> MERCHANTABILITY
data/bioperl-1.7.7/lib/Bio/Ontology/RelationshipFactory.pm:23: MERCHANTIBILITY ==> MERCHANTABILITY
data/bioperl-1.7.7/lib/Bio/Ontology/SimpleOntologyEngine.pm:19: MERCHANTIBILITY ==> MERCHANTABILITY
data/bioperl-1.7.7/lib/Bio/Ontology/SimpleOntologyEngine.pm:257: ans ==> and
data/bioperl-1.7.7/lib/Bio/Ontology/SimpleOntologyEngine.pm:261: ans ==> and
data/bioperl-1.7.7/lib/Bio/Ontology/SimpleOntologyEngine.pm:264: ans ==> and
data/bioperl-1.7.7/lib/Bio/Ontology/SimpleOntologyEngine.pm:594: ans ==> and
data/bioperl-1.7.7/lib/Bio/Ontology/SimpleOntologyEngine.pm:597: ans ==> and
data/bioperl-1.7.7/lib/Bio/Ontology/SimpleOntologyEngine.pm:600: ans ==> and
data/bioperl-1.7.7/lib/Bio/Ontology/SimpleOntologyEngine.pm:604: ans ==> and
data/bioperl-1.7.7/lib/Bio/Ontology/SimpleOntologyEngine.pm:609: ans ==> and
data/bioperl-1.7.7/lib/Bio/Ontology/SimpleOntologyEngine.pm:613: ans ==> and
data/bioperl-1.7.7/lib/Bio/Ontology/SimpleOntologyEngine.pm:616: ans ==> and
data/bioperl-1.7.7/lib/Bio/Ontology/SimpleGOEngine/GraphAdaptor.pm:19: MERCHANTIBILITY ==> MERCHANTABILITY
data/bioperl-1.7.7/lib/Bio/OntologyIO/goflat.pm:18: MERCHANTIBILITY ==> MERCHANTABILITY
data/bioperl-1.7.7/lib/Bio/OntologyIO/soflat.pm:19: MERCHANTIBILITY ==> MERCHANTABILITY
data/bioperl-1.7.7/lib/Bio/OntologyIO/dagflat.pm:19: MERCHANTIBILITY ==> MERCHANTABILITY
data/bioperl-1.7.7/lib/Bio/OntologyIO/dagflat.pm:278: BA ==> BY, BE
data/bioperl-1.7.7/lib/Bio/OntologyIO/dagflat.pm:787: defintions ==> definitions
data/bioperl-1.7.7/lib/Bio/OntologyIO/InterProParser.pm:19: MERCHANTIBILITY ==> MERCHANTABILITY
data/bioperl-1.7.7/lib/Bio/OntologyIO/simplehierarchy.pm:18: MERCHANTIBILITY ==> MERCHANTABILITY
data/bioperl-1.7.7/lib/Bio/OntologyIO/Handlers/InterProHandler.pm:19: MERCHANTIBILITY ==> MERCHANTABILITY
data/bioperl-1.7.7/lib/Bio/Location/Split.pm:492: responsability ==> responsibility
data/bioperl-1.7.7/lib/Bio/Location/Split.pm:516: responsability ==> responsibility
data/bioperl-1.7.7/lib/Bio/Location/Split.pm:541: responsability ==> responsibility
data/bioperl-1.7.7/lib/Bio/Location/Split.pm:565: responsability ==> responsibility
data/bioperl-1.7.7/lib/Bio/Location/Split.pm:612: responsability ==> responsibility
data/bioperl-1.7.7/lib/Bio/Location/Split.pm:660: responsability ==> responsibility
data/bioperl-1.7.7/lib/Bio/Annotation/Tree.pm:41: OTU ==> OUT
data/bioperl-1.7.7/lib/Bio/Annotation/Tree.pm:128: te ==> the, be, we
data/bioperl-1.7.7/lib/Bio/Annotation/DBLink.pm:156: te ==> the, be, we
data/bioperl-1.7.7/lib/Bio/Annotation/Target.pm:121: te ==> the, be, we
data/bioperl-1.7.7/lib/Bio/Annotation/Comment.pm:104: te ==> the, be, we
data/bioperl-1.7.7/lib/Bio/Annotation/TagTree.pm:14: MERCHANTIBILITY ==> MERCHANTABILITY
data/bioperl-1.7.7/lib/Bio/Annotation/TagTree.pm:47: indention ==> indentation
data/bioperl-1.7.7/lib/Bio/Annotation/TagTree.pm:154: Cant ==> Can't
data/bioperl-1.7.7/lib/Bio/Annotation/Relation.pm:141: te ==> the, be, we
data/bioperl-1.7.7/lib/Bio/Annotation/Reference.pm:140: te ==> the, be, we
data/bioperl-1.7.7/lib/Bio/Annotation/Collection.pm:363: irregardless ==> regardless
data/bioperl-1.7.7/lib/Bio/Annotation/Collection.pm:485: te ==> the, be, we
data/bioperl-1.7.7/lib/Bio/Annotation/SimpleValue.pm:140: te ==> the, be, we
data/bioperl-1.7.7/lib/Bio/Annotation/OntologyTerm.pm:23: MERCHANTIBILITY ==> MERCHANTABILITY
data/bioperl-1.7.7/lib/Bio/Annotation/OntologyTerm.pm:186: te ==> the, be, we
data/bioperl-1.7.7/lib/Bio/Annotation/StructuredValue.pm:18: MERCHANTIBILITY ==> MERCHANTABILITY
data/bioperl-1.7.7/lib/Bio/Annotation/StructuredValue.pm:143: te ==> the, be, we
data/bioperl-1.7.7/lib/Bio/Annotation/AnnotationFactory.pm:23: MERCHANTIBILITY ==> MERCHANTABILITY
data/bioperl-1.7.7/lib/Bio/Search/SearchUtils.pm:320: aligment ==> alignment
data/bioperl-1.7.7/lib/Bio/Search/Hit/HitI.pm:246: calculatable ==> calculable
data/bioperl-1.7.7/lib/Bio/Search/Hit/HitI.pm:674: interate ==> iterate
data/bioperl-1.7.7/lib/Bio/Search/Hit/PullHitI.pm:306: calculatable ==> calculable
data/bioperl-1.7.7/lib/Bio/Search/Hit/PullHitI.pm:795: arrray ==> array
data/bioperl-1.7.7/lib/Bio/Search/Hit/PullHitI.pm:804: interate ==> iterate
data/bioperl-1.7.7/lib/Bio/Search/Hit/PullHitI.pm:1074: interate ==> iterate
data/bioperl-1.7.7/lib/Bio/Search/Hit/PullHitI.pm:1093: interate ==> iterate
data/bioperl-1.7.7/lib/Bio/Search/Hit/PullHitI.pm:1111: interate ==> iterate
data/bioperl-1.7.7/lib/Bio/Search/Hit/PullHitI.pm:1130: interate ==> iterate
data/bioperl-1.7.7/lib/Bio/Search/Hit/ModelHit.pm:226: calculatable ==> calculable
data/bioperl-1.7.7/lib/Bio/Search/Hit/GenericHit.pm:394: calculatable ==> calculable
data/bioperl-1.7.7/lib/Bio/Search/Hit/GenericHit.pm:828: arrray ==> array
data/bioperl-1.7.7/lib/Bio/Search/Hit/GenericHit.pm:837: interate ==> iterate
data/bioperl-1.7.7/lib/Bio/Search/Hit/GenericHit.pm:920: delibrately ==> deliberately
data/bioperl-1.7.7/lib/Bio/Search/Hit/GenericHit.pm:1217: interate ==> iterate
data/bioperl-1.7.7/lib/Bio/Search/Hit/GenericHit.pm:1266: interate ==> iterate
data/bioperl-1.7.7/lib/Bio/Search/Hit/GenericHit.pm:1304: interate ==> iterate
data/bioperl-1.7.7/lib/Bio/Search/Hit/GenericHit.pm:1360: interate ==> iterate
data/bioperl-1.7.7/lib/Bio/Search/Hit/GenericHit.pm:1396: interate ==> iterate
data/bioperl-1.7.7/lib/Bio/Search/Hit/PsiBlastHit.pm:649: charactes ==> characters
data/bioperl-1.7.7/lib/Bio/Search/Hit/PsiBlastHit.pm:1255: arrray ==> array
data/bioperl-1.7.7/lib/Bio/Search/Hit/PsiBlastHit.pm:1264: interate ==> iterate
data/bioperl-1.7.7/lib/Bio/Search/Hit/PsiBlastHit.pm:1320: interate ==> iterate
data/bioperl-1.7.7/lib/Bio/Search/Hit/PsiBlastHit.pm:1560: interate ==> iterate
data/bioperl-1.7.7/lib/Bio/Search/Hit/PsiBlastHit.pm:1597: interate ==> iterate
data/bioperl-1.7.7/lib/Bio/Search/Hit/PsiBlastHit.pm:1633: interate ==> iterate
data/bioperl-1.7.7/lib/Bio/Search/Hit/PsiBlastHit.pm:1693: interate ==> iterate
data/bioperl-1.7.7/lib/Bio/Search/Hit/PsiBlastHit.pm:1725: interate ==> iterate
data/bioperl-1.7.7/lib/Bio/Search/HSP/ModelHSP.pm:90: Seach ==> Search
data/bioperl-1.7.7/lib/Bio/Search/HSP/GenericHSP.pm:201: dafault ==> default
data/bioperl-1.7.7/lib/Bio/Search/HSP/GenericHSP.pm:1200: preceeding ==> preceding, proceeding
data/bioperl-1.7.7/lib/Bio/Search/Result/CrossMatchResult.pm:474: algorightm ==> algorithm
data/bioperl-1.7.7/lib/Bio/Search/Tiling/MapTiling.pm:1081: postives ==> positives
data/bioperl-1.7.7/lib/Bio/Search/Tiling/MapTileUtils.pm:508: direcly ==> directly
data/bioperl-1.7.7/lib/Bio/SeqFeature/Generic.pm:559: containings ==> containing
data/bioperl-1.7.7/lib/Bio/SeqFeature/Generic.pm:709: assumming ==> assuming
data/bioperl-1.7.7/lib/Bio/SeqFeature/Generic.pm:857: qualifer ==> qualifier
data/bioperl-1.7.7/lib/Bio/SeqFeature/Collection.pm:254: containe ==> contain, contained, container, contains
data/bioperl-1.7.7/lib/Bio/SeqFeature/Computation.pm:499: qualifer ==> qualifier
data/bioperl-1.7.7/lib/Bio/SeqFeature/PositionProxy.pm:298: assumming ==> assuming
data/bioperl-1.7.7/lib/Bio/SeqFeature/TypedSeqFeatureI.pm:28: ot ==> to, of, or
data/bioperl-1.7.7/lib/Bio/SeqFeature/TypedSeqFeatureI.pm:111: ot ==> to, of, or
data/bioperl-1.7.7/lib/Bio/SeqFeature/AnnotationAdaptor.pm:23: MERCHANTIBILITY ==> MERCHANTABILITY
data/bioperl-1.7.7/lib/Bio/SeqFeature/Gene/TranscriptI.pm:106: inital ==> initial
data/bioperl-1.7.7/lib/Bio/SeqFeature/Gene/GeneStructureI.pm:126: inital ==> initial
data/bioperl-1.7.7/lib/Bio/SeqFeature/Tools/TypeMapper.pm:238: overriden ==> overridden
data/bioperl-1.7.7/lib/Bio/SeqFeature/Tools/Unflattener.pm:163: idiosyncracies ==> idiosyncrasies
data/bioperl-1.7.7/lib/Bio/SeqFeature/Tools/Unflattener.pm:1290: seperate ==> separate
data/bioperl-1.7.7/lib/Bio/SeqFeature/Tools/Unflattener.pm:1312: preceeded ==> preceded, proceeded
data/bioperl-1.7.7/lib/Bio/SeqFeature/Tools/Unflattener.pm:1591: tranfer ==> transfer
data/bioperl-1.7.7/lib/Bio/SeqFeature/Tools/Unflattener.pm:1660: seperate ==> separate
data/bioperl-1.7.7/lib/Bio/Factory/AnalysisI.pm:146: Analyis ==> Analysis
data/bioperl-1.7.7/lib/Bio/Factory/ObjectFactory.pm:23: MERCHANTIBILITY ==> MERCHANTABILITY
data/bioperl-1.7.7/lib/Bio/Factory/ObjectBuilderI.pm:23: MERCHANTIBILITY ==> MERCHANTABILITY
data/bioperl-1.7.7/lib/Bio/Factory/LocationFactoryI.pm:23: MERCHANTIBILITY ==> MERCHANTABILITY
data/bioperl-1.7.7/lib/Bio/Factory/FTLocationFactory.pm:22: MERCHANTIBILITY ==> MERCHANTABILITY
data/bioperl-1.7.7/lib/Bio/Factory/SequenceProcessorI.pm:23: MERCHANTIBILITY ==> MERCHANTABILITY
data/bioperl-1.7.7/examples/make_primers.pl:162: nott ==> not
data/bioperl-1.7.7/examples/classify_hits_kingdom:104: therefor ==> therefore
data/bioperl-1.7.7/examples/root/exceptions4.pl:4: supress ==> suppress
data/bioperl-1.7.7/examples/root/exceptions1.pl:43: supress ==> suppress
data/bioperl-1.7.7/examples/root/exceptions1.pl:133: implementating ==> implementing
data/bioperl-1.7.7/examples/tools/parse_codeml.pl:15: otu ==> out
data/bioperl-1.7.7/examples/tools/parse_codeml.pl:15: otu ==> out
data/bioperl-1.7.7/examples/align/FastAlign.pl:25: genarate ==> generate
data/bioperl-1.7.7/examples/align/FastAlign.pl:93: alignement ==> alignment
data/bioperl-1.7.7/examples/align/FastAlign.pl:156: informations ==> information
data/bioperl-1.7.7/examples/align/simplealign.pl:103: ANE ==> AND
data/bioperl-1.7.7/examples/searchio/custom_writer.pl:7: ouputs ==> outputs
data/bioperl-1.7.7/examples/Bio-DB-GFF/load_ucsc.pl:24: accCount ==> account
data/bioperl-1.7.7/debian/README.source:1: ressources ==> resources
data/bioperl-1.7.7/debian/changelog:193: overlaping ==> overlapping
data/bioperl-1.7.7/debian/changelog:303: informations ==> information
data/bioperl-1.7.7/debian/copyright:95: ist ==> is, it, its, it's, sit, list