data/biosyntax-1.0.0b/bioSyntax_INSTALL.sh:285: ans ==> and
data/biosyntax-1.0.0b/bioSyntax_INSTALL.sh:286: ans ==> and
data/biosyntax-1.0.0b/bioSyntax_INSTALL.sh:294: ans ==> and
data/biosyntax-1.0.0b/bioSyntax_INSTALL.sh:295: ans ==> and
data/biosyntax-1.0.0b/bioSyntax_INSTALL.sh:303: ans ==> and
data/biosyntax-1.0.0b/bioSyntax_INSTALL.sh:304: ans ==> and
data/biosyntax-1.0.0b/bioSyntax_INSTALL.sh:309: ans ==> and
data/biosyntax-1.0.0b/bioSyntax_INSTALL.sh:310: ans ==> and
data/biosyntax-1.0.0b/vscode/out/extension.js.map:1: AADD ==> ADD
data/biosyntax-1.0.0b/vscode/syntaxes/pdb.tmLanguage.json:246: SER ==> SET
data/biosyntax-1.0.0b/vscode/syntaxes/sam.tmLanguage.json:147: FO ==> OF, FOR
data/biosyntax-1.0.0b/vscode/syntaxes/sam.tmLanguage.json:178: FO ==> OF, FOR
data/biosyntax-1.0.0b/less/bioSyntax.outlang:67: omited ==> omitted
data/biosyntax-1.0.0b/less/bioSyntax-vcf.outlang:69: omited ==> omitted
data/biosyntax-1.0.0b/less/sam.lang:54: FO ==> OF, FOR
data/biosyntax-1.0.0b/less/vcf.lang:246: upto ==> up to
data/biosyntax-1.0.0b/less/pdb.lang:104: SER ==> SET
data/biosyntax-1.0.0b/less/bp_append.txt:37: Auxillary ==> Auxiliary
data/biosyntax-1.0.0b/less/rc_append.txt:35: Auxillary ==> Auxiliary
data/biosyntax-1.0.0b/sublime/sam.sublime-syntax:103: FO ==> OF, FOR
data/biosyntax-1.0.0b/sublime/fasta-hydro.sublime-syntax:85: SER ==> SET
data/biosyntax-1.0.0b/sublime/fasta-taylor.sublime-syntax:85: SER ==> SET
data/biosyntax-1.0.0b/sublime/fasta-clustal.sublime-syntax:85: SER ==> SET
data/biosyntax-1.0.0b/sublime/fasta-zappo.sublime-syntax:85: SER ==> SET
data/biosyntax-1.0.0b/gedit/language-specs/sam.lang:174: FO ==> OF, FOR
data/biosyntax-1.0.0b/gedit/language-specs/fasta-taylor.lang:26: tyE ==> type, tie
data/biosyntax-1.0.0b/gedit/language-specs/fasta-taylor.lang:74: tyE ==> type, tie
data/biosyntax-1.0.0b/gedit/language-specs/pdb.lang:74: chainG ==> chain
data/biosyntax-1.0.0b/gedit/language-specs/pdb.lang:187: chainG ==> chain
data/biosyntax-1.0.0b/gedit/language-specs/pdb.lang:187: chainG ==> chain
data/biosyntax-1.0.0b/gedit/language-specs/pdb.lang:262: SER ==> SET
data/biosyntax-1.0.0b/gedit/language-specs/pdb.lang:347: SER ==> SET
data/biosyntax-1.0.0b/gedit/language-specs/pdb.lang:348: SER ==> SET
data/biosyntax-1.0.0b/gedit/language-specs/pdb.lang:382: chainG ==> chain
data/biosyntax-1.0.0b/gedit/language-specs/pdb.lang:424: CONECT ==> CONNECT
data/biosyntax-1.0.0b/gedit/language-specs/pdb.lang:426: CONECT ==> CONNECT
data/biosyntax-1.0.0b/gedit/language-specs/cwl.lang:10: Lanugage ==> Language
data/biosyntax-1.0.0b/examples/nt-seq/test1.fq:4: ADDD ==> ADD
data/biosyntax-1.0.0b/examples/sam/test1.sam:66: BA ==> BY, BE
data/biosyntax-1.0.0b/examples/sam/test1.sam:155: ADDD ==> ADD
data/biosyntax-1.0.0b/examples/sam/test1.sam:809: CACE ==> CACHE
data/biosyntax-1.0.0b/examples/sam/test1.sam:901: BA ==> BY, BE
data/biosyntax-1.0.0b/examples/sam/test1.sam:929: BA ==> BY, BE
data/biosyntax-1.0.0b/examples/sam/test1.sam:931: BA ==> BY, BE
data/biosyntax-1.0.0b/examples/sam/test1.sam:975: BA ==> BY, BE
data/biosyntax-1.0.0b/examples/sam/mario.sam:9: BA ==> BY, BE
data/biosyntax-1.0.0b/examples/sam/mario.sam:17: BA ==> BY, BE
data/biosyntax-1.0.0b/examples/sam/test2.sam:9: BA ==> BY, BE
data/biosyntax-1.0.0b/examples/sam/test2.sam:17: BA ==> BY, BE
data/biosyntax-1.0.0b/examples/sam/test2.sam:43: BA ==> BY, BE
data/biosyntax-1.0.0b/examples/sam/test2.sam:63: BA ==> BY, BE
data/biosyntax-1.0.0b/examples/sam/test2.sam:69: BA ==> BY, BE
data/biosyntax-1.0.0b/examples/sam/test2.sam:76: ADDD ==> ADD
data/biosyntax-1.0.0b/examples/sam/test2.sam:76: ADDD ==> ADD
data/biosyntax-1.0.0b/examples/sam/test2.sam:77: DAA ==> DATA
data/biosyntax-1.0.0b/examples/sam/test2.sam:142: BA ==> BY, BE
data/biosyntax-1.0.0b/examples/sam/test2.sam:151: BA ==> BY, BE
data/biosyntax-1.0.0b/examples/sam/test2.sam:185: BA ==> BY, BE
data/biosyntax-1.0.0b/examples/sam/test2.sam:199: BA ==> BY, BE
data/biosyntax-1.0.0b/examples/sam/test2.sam:313: BA ==> BY, BE
data/biosyntax-1.0.0b/examples/sam/test2.sam:339: BA ==> BY, BE
data/biosyntax-1.0.0b/examples/sam/test2.sam:365: BA ==> BY, BE
data/biosyntax-1.0.0b/examples/sam/test2.sam:385: BA ==> BY, BE
data/biosyntax-1.0.0b/examples/sam/test2.sam:396: BA ==> BY, BE
data/biosyntax-1.0.0b/examples/sam/test2.sam:438: BA ==> BY, BE
data/biosyntax-1.0.0b/examples/sam/test2.sam:761: BA ==> BY, BE
data/biosyntax-1.0.0b/examples/sam/test2.sam:803: AFE ==> SAFE
data/biosyntax-1.0.0b/examples/sam/test2.sam:913: BA ==> BY, BE
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:19: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2417: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2418: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2419: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2420: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2421: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2422: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2423: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2424: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2425: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2426: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2427: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2428: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2429: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2430: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2431: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2432: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2433: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2434: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2435: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2436: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2437: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2438: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2439: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2440: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2441: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2442: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2443: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2444: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2445: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2446: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2447: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2448: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2449: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2450: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2451: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2452: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2453: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2454: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2455: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2456: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2457: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2458: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2459: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2460: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2461: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2462: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2463: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2464: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2465: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2466: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2467: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2468: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2469: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2470: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2471: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2472: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2473: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2474: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2475: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2476: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2477: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2478: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2479: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2480: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2481: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2482: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2483: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2484: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2485: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2486: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2487: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2488: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2489: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2490: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2491: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2492: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2493: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2494: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2495: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2496: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2497: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2498: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2499: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2500: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2501: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2502: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2503: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2504: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2505: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2506: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2507: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2508: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2509: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2510: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2511: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2512: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2513: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2514: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2515: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2516: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2517: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2518: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2519: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2520: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2521: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2522: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2523: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2524: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2525: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2526: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2527: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2528: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2529: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2530: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2531: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2532: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2533: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2534: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2535: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2536: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2537: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2538: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2539: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2540: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2541: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2542: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2543: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2544: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2545: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2546: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2547: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2548: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2549: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2550: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2551: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2552: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2553: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2554: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2555: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2556: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2557: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2558: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2559: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2560: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2561: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2562: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2563: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2564: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2565: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2566: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2567: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2568: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2569: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2570: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2571: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2572: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2573: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2574: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2575: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2576: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2577: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2578: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2579: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2580: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2581: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2582: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2583: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2584: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2585: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2586: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2587: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2588: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2589: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2590: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2591: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2592: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2593: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2594: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2595: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2596: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2597: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2598: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2599: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2600: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2601: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2602: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2603: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2604: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2605: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2606: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2607: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2608: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2609: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2610: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2611: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2612: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2613: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2614: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2615: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2616: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2617: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2618: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2619: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2620: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2621: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2622: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2623: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2624: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2625: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2626: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2627: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2628: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2629: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2630: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2631: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2632: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2633: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2634: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2635: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2636: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2637: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2638: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2639: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2640: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2641: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2642: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2643: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2644: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2645: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2646: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2647: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2648: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2649: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2650: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2651: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2652: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2653: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2654: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2655: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2656: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2657: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2658: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2659: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2660: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2661: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2662: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2663: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2664: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2665: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2666: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2667: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2668: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2669: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2670: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2671: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2672: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2673: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2674: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2675: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2676: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2677: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2678: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2679: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2680: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2681: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2682: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2683: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2684: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2685: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2686: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2687: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2688: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2689: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2690: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2691: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2692: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2693: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2694: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2695: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2696: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2697: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2698: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2699: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2700: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2701: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2702: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2703: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2704: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2705: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2706: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2707: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2708: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2709: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2710: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2711: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2712: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2713: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2714: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2715: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2716: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2717: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2718: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2719: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2720: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2721: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2722: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2723: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2724: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2725: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2726: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2727: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2728: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2729: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2730: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2731: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2732: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2733: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2734: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2735: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2736: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2737: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2738: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2739: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2740: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2741: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2742: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2743: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2744: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2745: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2746: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2747: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2748: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2749: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2750: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2751: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2752: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2753: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2754: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2755: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2756: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2757: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2758: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2759: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2760: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2761: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2762: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2763: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2764: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2765: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2766: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2767: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2768: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2769: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2770: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2771: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2772: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2773: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2774: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2775: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2776: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2777: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2778: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2779: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2780: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2781: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2782: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2783: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2784: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2785: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2786: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2787: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2788: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2789: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2790: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2791: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2792: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2793: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2794: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2795: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2796: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2797: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2798: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2799: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2800: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2801: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2802: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2803: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2804: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2805: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2806: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2807: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2808: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2809: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2810: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2811: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2812: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2813: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2814: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2815: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2816: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2817: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2818: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2819: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2820: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2821: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test2.pdb:2822: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:257: FORMATE ==> FORMAT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:317: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:330: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:340: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:353: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:418: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:515: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:517: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:518: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:519: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:521: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:521: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:521: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:522: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:523: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:524: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:527: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:528: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:529: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:530: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:537: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:539: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:541: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:542: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:542: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:546: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:547: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:549: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:549: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:549: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:550: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:551: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:552: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:555: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:556: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:557: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:558: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:565: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:567: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:569: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:570: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:570: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:587: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:587: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:603: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:603: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:623: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:628: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:643: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:648: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:949: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:950: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:951: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:952: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:953: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:954: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:955: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:956: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:957: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:958: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:959: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:960: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:1355: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:1356: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:1357: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:1358: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:1359: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:1360: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:1361: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:1362: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:1363: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:1364: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:1365: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:1366: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:1367: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:1368: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:1369: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:1370: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:1371: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:1372: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:1373: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:1374: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:1375: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:1376: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:1377: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:1378: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:1389: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:1390: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:1391: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:1392: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:1393: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:1394: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:1395: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:1396: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:1397: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:1398: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:1399: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:1400: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:1643: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:1644: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:1645: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:1646: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:1647: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:1648: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:1649: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:1650: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:1651: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:1652: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:1653: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:1654: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:1809: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:1810: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:1811: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:1812: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:1813: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:1814: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:1815: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:1816: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:1817: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:1818: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:1819: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:1820: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:1937: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:1938: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:1939: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:1940: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:1941: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:1942: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:1943: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:1944: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:1945: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:1946: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:1947: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:1948: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:2559: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:2560: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:2561: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:2562: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:2563: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:2564: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:2565: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:2566: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:2567: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:2568: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:2569: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:2570: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:2729: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:2730: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:2731: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:2732: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:2733: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:2734: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:2735: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:2736: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:2737: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:2738: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:2739: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:2740: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:2935: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:2936: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:2937: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:2938: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:2939: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:2940: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:2941: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:2942: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:2943: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:2944: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:2945: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:2946: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:3085: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:3086: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:3087: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:3088: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:3089: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:3090: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:3091: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:3092: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:3093: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:3094: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:3095: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:3096: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:4441: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:4442: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:4443: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:4444: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:4445: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:4446: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:4447: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:4448: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:4449: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:4450: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:4451: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:4452: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:4863: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:4864: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:4865: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:4866: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:4867: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:4868: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:4869: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:4870: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:4871: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:4872: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:4873: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:4874: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:5299: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:5300: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:5301: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:5302: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:5303: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:5304: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:5305: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:5306: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:5307: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:5308: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:5309: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:5310: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:5345: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:5346: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:5347: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:5348: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:5349: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:5350: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:5351: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:5352: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:5353: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:5354: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:5355: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:5356: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:6044: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:6045: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:6046: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:6047: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:6048: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:6049: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:6050: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:6051: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:6052: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:6053: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:6054: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:6055: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:6440: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:6441: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:6442: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:6443: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:6444: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:6445: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:6446: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:6447: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:6448: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:6449: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:6450: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:6451: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:6452: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:6453: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:6454: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:6455: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:6456: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:6457: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:6458: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:6459: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:6460: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:6461: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:6472: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:6473: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:6474: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:6475: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:6476: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:6477: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:6478: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:6479: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:6480: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:6481: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:6482: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:6483: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:6726: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:6727: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:6728: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:6729: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:6730: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:6731: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:6732: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:6733: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:6734: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:6735: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:6736: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:6737: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:6880: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:6881: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:6882: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:6883: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:6884: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:6885: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:6886: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:6887: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:6888: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:6889: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:6890: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:6891: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:7014: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:7015: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:7016: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:7017: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:7018: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:7019: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:7020: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:7021: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:7022: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:7023: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:7024: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:7025: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:7634: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:7635: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:7636: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:7637: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:7638: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:7639: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:7640: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:7641: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:7642: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:7643: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:7644: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:7645: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:7798: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:7799: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:7800: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:7801: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:7802: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:7803: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:7804: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:7805: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:7806: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:7807: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:7808: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:7809: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:8014: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:8015: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:8016: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:8017: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:8018: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:8019: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:8020: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:8021: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:8022: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:8023: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:8024: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:8025: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:8164: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:8165: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:8166: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:8167: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:8168: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:8169: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:8170: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:8171: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:8172: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:8173: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:8174: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:8175: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:9508: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:9509: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:9510: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:9511: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:9512: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:9513: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:9514: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:9515: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:9516: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:9517: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:9518: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:9519: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:9934: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:9935: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:9936: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:9937: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:9938: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:9939: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:9940: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:9941: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:9942: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:9943: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:9944: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:9945: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10374: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10375: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10376: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10377: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10378: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10379: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10380: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10381: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10382: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10383: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10384: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10385: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10420: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10421: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10422: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10423: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10424: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10425: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10426: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10427: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10428: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10429: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10430: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10431: SER ==> SET
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10851: NAX ==> MAX, NAD
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10894: NAX ==> MAX, NAD
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10943: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10944: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10945: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10946: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10947: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10948: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10949: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10950: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10951: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10952: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10953: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10954: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10955: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10956: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10957: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10958: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10959: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10960: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10961: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10962: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10963: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10964: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10965: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10966: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10967: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10968: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10969: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10970: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10971: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10972: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10973: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10974: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10975: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10976: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10977: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10978: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10979: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10980: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10981: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10982: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10983: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10984: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10985: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10986: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10987: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10988: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10989: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10990: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10991: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10992: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10993: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10994: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10995: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10996: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10997: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10998: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:10999: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:11000: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:11001: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:11002: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:11003: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:11004: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:11005: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:11006: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:11007: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:11008: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:11009: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:11010: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:11011: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:11012: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:11013: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:11014: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:11015: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:11016: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:11017: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:11018: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:11019: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:11020: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:11021: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:11022: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:11023: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:11024: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:11025: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:11026: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:11027: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/pdb/test.pdb:11028: CONECT ==> CONNECT
data/biosyntax-1.0.0b/examples/vcf/test_dbSNP.vcf:35: refernce ==> reference
data/biosyntax-1.0.0b/examples/annot/test.bedpe:84: PTD ==> PDF
data/biosyntax-1.0.0b/examples/annot/test.bedpe:85: PTD ==> PDF
data/biosyntax-1.0.0b/examples/annot/test.bedpe:86: PTD ==> PDF
data/biosyntax-1.0.0b/examples/annot/test.bedpe:87: PTD ==> PDF
data/biosyntax-1.0.0b/examples/annot/test.bedpe:88: PTD ==> PDF
data/biosyntax-1.0.0b/examples/annot/test.bedpe:89: PTD ==> PDF
data/biosyntax-1.0.0b/examples/annot/test.bedpe:90: PTD ==> PDF
data/biosyntax-1.0.0b/examples/annot/test.bedpe:91: PTD ==> PDF
data/biosyntax-1.0.0b/examples/annot/test.bedpe:92: PTD ==> PDF
data/biosyntax-1.0.0b/examples/annot/test.bedpe:93: PTD ==> PDF
data/biosyntax-1.0.0b/examples/annot/test.bedpe:94: PTD ==> PDF
data/biosyntax-1.0.0b/vim/syntax/vcf.vim:21: defintion ==> definition
data/biosyntax-1.0.0b/vim/syntax/pdb.vim:208: higlight ==> highlight
data/biosyntax-1.0.0b/vim/syntax/gaussian.vim:373: Conver ==> Convert
data/biosyntax-1.0.0b/vim/syntax/gaussian.vim:985: Conver ==> Convert
data/biosyntax-1.0.0b/vim/syntax/gaussian.vim:1027: Conver ==> Convert
data/biosyntax-1.0.0b/vim/syntax/gaussian.vim:1081: Conver ==> Convert
data/biosyntax-1.0.0b/vim/syntax/gaussian.vim:1131: Conver ==> Convert
data/biosyntax-1.0.0b/vim/syntax/gaussian.vim:1173: Conver ==> Convert
data/biosyntax-1.0.0b/vim/syntax/gaussian.vim:1211: Conver ==> Convert
data/biosyntax-1.0.0b/vim/syntax/gaussian.vim:1313: Conver ==> Convert
data/biosyntax-1.0.0b/vim/syntax/gaussian.vim:1371: Conver ==> Convert
data/biosyntax-1.0.0b/vim/syntax/gaussian.vim:1446: Conver ==> Convert
data/biosyntax-1.0.0b/vim/syntax/gaussian.vim:6439: Conver ==> Convert
data/biosyntax-1.0.0b/vim/syntax/gaussian.vim:6469: Conver ==> Convert
data/biosyntax-1.0.0b/vim/syntax/gaussian.vim:6818: Conver ==> Convert
data/biosyntax-1.0.0b/vim/syntax/gaussian.vim:7396: Conver ==> Convert
data/biosyntax-1.0.0b/.pc/Debian_path.patch/less/rc_append.txt:35: Auxillary ==> Auxiliary