data/discosnp-4.4.4/README.md:68: fof ==> for
data/discosnp-4.4.4/README.md:72: fof ==> for
data/discosnp-4.4.4/README.md:76: fof ==> for
data/discosnp-4.4.4/README.md:80: fof ==> for
data/discosnp-4.4.4/run_discoSnp++.sh:49: equaly ==> equally
data/discosnp-4.4.4/run_discoSnp++.sh:84: Usefull ==> Useful
data/discosnp-4.4.4/run_discoSnp++.sh:107: fof ==> for
data/discosnp-4.4.4/run_discoSnp++.sh:107: fof ==> for
data/discosnp-4.4.4/run_discoSnp++.sh:137: fof ==> for
data/discosnp-4.4.4/run_discoSnp++.sh:137: fof ==> for
data/discosnp-4.4.4/run_discoSnp++_storagefile.sh:38: equaly ==> equally
data/discosnp-4.4.4/run_discoSnp++_storagefile.sh:72: Usefull ==> Useful
data/discosnp-4.4.4/run_discoSnp++_storagefile.sh:95: fof ==> for
data/discosnp-4.4.4/run_discoSnp++_storagefile.sh:95: fof ==> for
data/discosnp-4.4.4/run_discoSnp++_ML.sh:50: equaly ==> equally
data/discosnp-4.4.4/run_discoSnp++_ML.sh:87: Usefull ==> Useful
data/discosnp-4.4.4/run_discoSnp++_ML.sh:112: fof ==> for
data/discosnp-4.4.4/run_discoSnp++_ML.sh:112: fof ==> for
data/discosnp-4.4.4/run_discoSnp++_ML.sh:143: fof ==> for
data/discosnp-4.4.4/run_discoSnp++_ML.sh:143: fof ==> for
data/discosnp-4.4.4/discoSnpRAD/COOKBOOK.md:20: dowloaded ==> downloaded
data/discosnp-4.4.4/discoSnpRAD/COOKBOOK.md:35: fof ==> for
data/discosnp-4.4.4/discoSnpRAD/COOKBOOK.md:35: fof ==> for
data/discosnp-4.4.4/discoSnpRAD/COOKBOOK.md:35: fof ==> for
data/discosnp-4.4.4/discoSnpRAD/COOKBOOK.md:43: fof ==> for
data/discosnp-4.4.4/discoSnpRAD/COOKBOOK.md:50: fof ==> for
data/discosnp-4.4.4/discoSnpRAD/COOKBOOK.md:69: chatacters ==> characters
data/discosnp-4.4.4/discoSnpRAD/COOKBOOK.md:99: fof ==> for
data/discosnp-4.4.4/discoSnpRAD/COOKBOOK.md:174: fof ==> for
data/discosnp-4.4.4/discoSnpRAD/COOKBOOK.md:180: fof ==> for
data/discosnp-4.4.4/discoSnpRAD/COOKBOOK.md:190: fof ==> for
data/discosnp-4.4.4/discoSnpRAD/COOKBOOK.md:190: fof ==> for
data/discosnp-4.4.4/discoSnpRAD/README.md:16: instal ==> install
data/discosnp-4.4.4/discoSnpRAD/README.md:52: Additionnally ==> Additionally
data/discosnp-4.4.4/discoSnpRAD/README.md:52: usefull ==> useful
data/discosnp-4.4.4/discoSnpRAD/README.md:83: Additionnally ==> Additionally
data/discosnp-4.4.4/discoSnpRAD/README.md:85: usefull ==> useful
data/discosnp-4.4.4/discoSnpRAD/run_discoSnpRad.sh:99: Usefull ==> Useful
data/discosnp-4.4.4/discoSnpRAD/run_discoSnpRad.sh:120: fof ==> for
data/discosnp-4.4.4/discoSnpRAD/run_discoSnpRad.sh:120: fof ==> for
data/discosnp-4.4.4/discoSnpRAD/clustering_scripts/README.md:10: informations ==> information
data/discosnp-4.4.4/discoSnpRAD/clustering_scripts/fasta_and_cluster_to_filtered_vcf.py:53: formated ==> formatted
data/discosnp-4.4.4/discoSnpRAD/clustering_scripts/discoRAD_clustering.sh:21: informations ==> information
data/discosnp-4.4.4/discoSnpRAD/clustering_scripts/discoRAD_clustering.sh:160: fof ==> for
data/discosnp-4.4.4/discoSnpRAD/clustering_scripts/discoRAD_clustering.sh:162: fof ==> for
data/discosnp-4.4.4/discoSnpRAD/clustering_scripts/discoRAD_clustering.sh:164: fof ==> for
data/discosnp-4.4.4/discoSnpRAD/clustering_scripts/discoRAD_clustering.sh:167: fof ==> for
data/discosnp-4.4.4/discoSnpRAD/post-processing_scripts/README.md:63: Additionnally ==> Additionally
data/discosnp-4.4.4/discoSnpRAD/post-processing_scripts/README.md:73: fof ==> for
data/discosnp-4.4.4/discoSnpRAD/post-processing_scripts/README.md:75: fof ==> for
data/discosnp-4.4.4/discoSnpRAD/post-processing_scripts/add_cluster_info_to_mapped_vcf.py:31: splitted ==> split
data/discosnp-4.4.4/discoSnpRAD/post-processing_scripts/add_cluster_info_to_mapped_vcf.py:32: splitted ==> split
data/discosnp-4.4.4/discoSnpRAD/post-processing_scripts/add_cluster_info_to_mapped_vcf.py:33: splitted ==> split
data/discosnp-4.4.4/discoSnpRAD/post-processing_scripts/add_cluster_info_to_mapped_vcf.py:51: splitted ==> split
data/discosnp-4.4.4/discoSnpRAD/post-processing_scripts/add_cluster_info_to_mapped_vcf.py:52: splitted ==> split
data/discosnp-4.4.4/discoSnpRAD/post-processing_scripts/add_cluster_info_to_mapped_vcf.py:56: splitted ==> split
data/discosnp-4.4.4/discoSnpRAD/post-processing_scripts/add_cluster_info_to_mapped_vcf.py:57: splitted ==> split
data/discosnp-4.4.4/discoSnpRAD/post-processing_scripts/add_cluster_info_to_mapped_vcf.py:57: splitted ==> split
data/discosnp-4.4.4/discoSnpRAD/post-processing_scripts/filter_vcf_by_indiv_cov_max_missing_and_maf.py:112: splitted ==> split
data/discosnp-4.4.4/discoSnpRAD/post-processing_scripts/filter_vcf_by_indiv_cov_max_missing_and_maf.py:115: splitted ==> split
data/discosnp-4.4.4/discoSnpRAD/post-processing_scripts/filter_vcf_by_indiv_cov_max_missing_and_maf.py:121: splitted ==> split
data/discosnp-4.4.4/doc/vcf_creator_user_guide.txt:23: informations ==> information
data/discosnp-4.4.4/doc/vcf_creator_user_guide.txt:32: ouput ==> output
data/discosnp-4.4.4/doc/vcf_creator_user_guide.txt:41: optionnal ==> optional
data/discosnp-4.4.4/doc/vcf_creator_user_guide.txt:42: optionnal ==> optional
data/discosnp-4.4.4/doc/vcf_creator_user_guide.txt:44: Optionnal ==> Optional
data/discosnp-4.4.4/doc/vcf_creator_user_guide.txt:50: informations ==> information
data/discosnp-4.4.4/doc/discoSnp_user_guide.txt:17: Exemples ==> Examples
data/discosnp-4.4.4/doc/discoSnp_user_guide.txt:39: fof ==> for
data/discosnp-4.4.4/doc/discoSnp_user_guide.txt:65: wich ==> which
data/discosnp-4.4.4/doc/discoSnp_user_guide.txt:110: fof ==> for
data/discosnp-4.4.4/doc/discoSnp_user_guide.txt:113: fof ==> for
data/discosnp-4.4.4/doc/discoSnp_user_guide.txt:119: fof ==> for
data/discosnp-4.4.4/doc/discoSnp_user_guide.txt:123: fof ==> for
data/discosnp-4.4.4/doc/discoSnp_user_guide.txt:134: Correspondance ==> Correspondence
data/discosnp-4.4.4/doc/discoSnp_user_guide.txt:135: correspondance ==> correspondence
data/discosnp-4.4.4/doc/discoSnp_user_guide.txt:149: fof ==> for
data/discosnp-4.4.4/doc/discoSnp_user_guide.txt:174: sequece ==> sequence
data/discosnp-4.4.4/doc/discoSnp_user_guide.txt:180: bellow ==> below
data/discosnp-4.4.4/doc/discoSnp_user_guide.txt:180: correspondance ==> correspondence
data/discosnp-4.4.4/doc/discoSnp_user_guide.txt:196: fof ==> for
data/discosnp-4.4.4/doc/discoSnp_user_guide.txt:199: fof ==> for
data/discosnp-4.4.4/doc/discoSnp_user_guide.txt:206: Exemples ==> Examples
data/discosnp-4.4.4/doc/discoSnp_user_guide.txt:207: Exemple ==> Example
data/discosnp-4.4.4/doc/discoSnp_user_guide.txt:215: Exemple ==> Example
data/discosnp-4.4.4/scripts/clusters_and_fasta_to_fasta.py_DEPRECATED:21: formated ==> formatted
data/discosnp-4.4.4/scripts/format_phased_for_K2000.py:14: overlaping ==> overlapping
data/discosnp-4.4.4/scripts/vcf_formatting_functions.py:39: Alignement ==> Alignment
data/discosnp-4.4.4/scripts/vcf_formatting_functions.py:44: accross ==> across
data/discosnp-4.4.4/scripts/vcf_formatting_functions.py:59: splitted ==> split
data/discosnp-4.4.4/scripts/vcf_formatting_functions.py:63: usefull ==> useful
data/discosnp-4.4.4/scripts/ClassVCF_creator.py:71: somme ==> some
data/discosnp-4.4.4/scripts/ClassVCF_creator.py:119: dictionnary ==> dictionary
data/discosnp-4.4.4/scripts/ClassVCF_creator.py:120: dictionnary ==> dictionary
data/discosnp-4.4.4/scripts/ClassVCF_creator.py:122: dictionnary ==> dictionary
data/discosnp-4.4.4/scripts/ClassVCF_creator.py:136: dictionnary ==> dictionary
data/discosnp-4.4.4/scripts/ClassVCF_creator.py:146: attribut ==> attribute
data/discosnp-4.4.4/scripts/ClassVCF_creator.py:152: splitted ==> split
data/discosnp-4.4.4/scripts/ClassVCF_creator.py:152: informations ==> information
data/discosnp-4.4.4/scripts/ClassVCF_creator.py:451: dictionnary ==> dictionary
data/discosnp-4.4.4/scripts/ClassVCF_creator.py:595: somme ==> some
data/discosnp-4.4.4/scripts/ClassVCF_creator.py:674: substract ==> subtract
data/discosnp-4.4.4/scripts/ClassVCF_creator.py:676: substract ==> subtract
data/discosnp-4.4.4/scripts/ClassVCF_creator.py:681: Substracts ==> Subtracts
data/discosnp-4.4.4/scripts/ClassVCF_creator.py:774: informations ==> information
data/discosnp-4.4.4/scripts/ClassVCF_creator.py:775: attributs ==> attributes
data/discosnp-4.4.4/scripts/ClassVCF_creator.py:802: attribut ==> attribute
data/discosnp-4.4.4/scripts/ClassVCF_creator.py:817: lenght ==> length
data/discosnp-4.4.4/scripts/ClassVCF_creator.py:933: acount ==> account
data/discosnp-4.4.4/scripts/ClassVCF_creator.py:942: lenght ==> length
data/discosnp-4.4.4/scripts/ClassVCF_creator.py:1045: dictionnary ==> dictionary
data/discosnp-4.4.4/scripts/ClassVCF_creator.py:1045: informations ==> information
data/discosnp-4.4.4/scripts/ClassVCF_creator.py:1070: dictionnaries ==> dictionaries
data/discosnp-4.4.4/scripts/ClassVCF_creator.py:1272: occured ==> occurred
data/discosnp-4.4.4/scripts/ClassVCF_creator.py:1272: treatement ==> treatment
data/discosnp-4.4.4/scripts/ClassVCF_creator.py:1304: occured ==> occurred
data/discosnp-4.4.4/scripts/discoSnp++_to_csv.py:5: puting ==> putting
data/discosnp-4.4.4/scripts/discoSnp++_to_csv.py:5: formating ==> formatting
data/discosnp-4.4.4/scripts/functionObjectVCF_creator.py:13: accoutn ==> account
data/discosnp-4.4.4/scripts/functionObjectVCF_creator.py:28: Supression ==> Suppression
data/discosnp-4.4.4/scripts/functionObjectVCF_creator.py:36: attribut ==> attribute
data/discosnp-4.4.4/scripts/functionObjectVCF_creator.py:44: Treatement ==> Treatment
data/discosnp-4.4.4/scripts/functionObjectVCF_creator.py:44: informations ==> information
data/discosnp-4.4.4/scripts/functionObjectVCF_creator.py:46: informations ==> information
data/discosnp-4.4.4/scripts/functionObjectVCF_creator.py:58: dictionnary ==> dictionary
data/discosnp-4.4.4/scripts/functionObjectVCF_creator.py:58: informations ==> information
data/discosnp-4.4.4/scripts/functionObjectVCF_creator.py:76: Treatement ==> Treatment
data/discosnp-4.4.4/scripts/functionObjectVCF_creator.py:83: informations ==> information
data/discosnp-4.4.4/scripts/functionObjectVCF_creator.py:94: dictionnary ==> dictionary
data/discosnp-4.4.4/scripts/functionObjectVCF_creator.py:94: informations ==> information
data/discosnp-4.4.4/scripts/functionObjectVCF_creator.py:137: dictionnary ==> dictionary
data/discosnp-4.4.4/scripts/functionObjectVCF_creator.py:255: Alignement ==> Alignment
data/discosnp-4.4.4/scripts/functionObjectVCF_creator.py:266: accross ==> across
data/discosnp-4.4.4/scripts/VCF_creator.py:44: uncorrectly ==> incorrectly
data/discosnp-4.4.4/scripts/VCF_creator.py:123: splitted ==> split
data/discosnp-4.4.4/scripts/VCF_creator.py:129: splitted ==> split
data/discosnp-4.4.4/scripts/VCF_creator.py:151: Treatement ==> Treatment
data/discosnp-4.4.4/scripts/format_phased_variants_for_haplotyping.py:13: continaing ==> containing
data/discosnp-4.4.4/scripts/format_phased_variants_for_haplotyping.py:14: shoud ==> should
data/discosnp-4.4.4/scripts/format_phased_variants_for_haplotyping.py:44: searche ==> search, searched
data/discosnp-4.4.4/scripts/from_phased_alleles_to_clusters.sh:29: suppres ==> suppress
data/discosnp-4.4.4/scripts/from_phased_alleles_to_clusters.sh:42: leas ==> least, lease
data/discosnp-4.4.4/scripts/redundancy_removal_discosnp.py:19: nothin ==> nothing
data/discosnp-4.4.4/scripts/k3000/K3000_common.py:309: happend ==> happened, happens, happen
data/discosnp-4.4.4/scripts/k3000/K3000_compacted_int_to_fa.py:71: caracters ==> characters
data/discosnp-4.4.4/scripts/k3000/K3000_compacted_paths_to_fa.py:133: retreive ==> retrieve
data/discosnp-4.4.4/scripts/k3000/K3000_compacted_paths_to_fa.py:146: retreive ==> retrieve
data/discosnp-4.4.4/scripts/k3000/K3000_enhance_gfa.py:62: inlcuded ==> included
data/discosnp-4.4.4/scripts/k3000/K3000_enhance_gfa.py:112: appart ==> apart
data/discosnp-4.4.4/scripts/k3000/K3000_enhance_gfa.py:219: dictionnary ==> dictionary
data/discosnp-4.4.4/scripts/k3000/K3000_enhance_gfa.py:238: retreives ==> retrieves
data/discosnp-4.4.4/scripts/k3000/K3000_enhance_gfa.py:240: retreives ==> retrieves
data/discosnp-4.4.4/scripts/k3000/K3000_find_unitig_connected_pairs_of_facts.py:198: symetrical ==> symmetrical
data/discosnp-4.4.4/scripts/k3000/K3000_gfa_post_treatment.py:33: forbiden ==> forbidden
data/discosnp-4.4.4/scripts/k3000/K3000_gfa_to_dat.py:205: writen ==> written
data/discosnp-4.4.4/scripts/k3000/K3000_gfa_to_dat.py:261: writen ==> written
data/discosnp-4.4.4/scripts/k3000/K3000_gfa_to_dat.py:325: writen ==> written
data/discosnp-4.4.4/scripts/k3000/K3000.py:38: Exemple ==> Example
data/discosnp-4.4.4/scripts/k3000/K3000.py:104: extention ==> extension
data/discosnp-4.4.4/scripts/k3000/K3000.py:105: extention ==> extension
data/discosnp-4.4.4/scripts/k3000/K3000.py:105: extention ==> extension
data/discosnp-4.4.4/scripts/k3000/K3000.py:105: extentions ==> extensions
data/discosnp-4.4.4/scripts/k3000/K3000.py:107: extention ==> extension
data/discosnp-4.4.4/scripts/k3000/K3000.py:120: extentions ==> extensions
data/discosnp-4.4.4/scripts/k3000/K3000.py:123: extention ==> extension
data/discosnp-4.4.4/scripts/k3000/K3000_node_ids_to_node_sequences.py:119: retreive ==> retrieve
data/discosnp-4.4.4/scripts/k3000/K3000_node_ids_to_node_sequences.py:132: retreive ==> retrieve
data/discosnp-4.4.4/scripts/k3000/K3000_node_ids_to_node_sequences.py:145: shold ==> should, hold, sold
data/discosnp-4.4.4/scripts/k3000/K3000_node_ids_to_node_sequences.py:145: happend ==> happened, happens, happen
data/discosnp-4.4.4/scripts/k3000/run.sh:110: succesion ==> succession
data/discosnp-4.4.4/scripts/phasing/phased_variants_to_graph_deprecated.py:5: anid ==> and
data/discosnp-4.4.4/scripts/phasing/phased_variants_to_graph_deprecated.py:6: anid ==> and
data/discosnp-4.4.4/scripts/phasing/phased_variants_to_graph_deprecated.py:6: anid ==> and
data/discosnp-4.4.4/scripts/phasing/phased_variants_to_graph_deprecated.py:7: anid ==> and
data/discosnp-4.4.4/scripts/phasing/phased_variants_to_graph_deprecated.py:9: anid ==> and
data/discosnp-4.4.4/scripts/phasing/phased_variants_to_graph_deprecated.py:10: anid ==> and
data/discosnp-4.4.4/scripts/phasing/phased_variants_to_graph_deprecated.py:11: anid ==> and
data/discosnp-4.4.4/scripts/phasing/phased_variants_to_graph_deprecated.py:11: anid ==> and
data/discosnp-4.4.4/scripts/phasing/phased_variants_to_graph_deprecated.py:12: anid ==> and
data/discosnp-4.4.4/scripts/phasing/phased_variants_to_graph_deprecated.py:40: begining ==> beginning
data/discosnp-4.4.4/scripts/simulations/multiple_samples_simulator.sh:23: lenght ==> length
data/discosnp-4.4.4/scripts/simulations/multiple_samples_simulator.sh:55: lenght ==> length
data/discosnp-4.4.4/scripts/validation_scripts/compare_vcf_disco_pos_allele_only.py:22: usefull ==> useful
data/discosnp-4.4.4/test/ref_discoRes_k_31_c_3_D_100_P_1_b_0_coherent.vcf:14: Alignement ==> Alignment
data/discosnp-4.4.4/test/ref_discoRes_k_31_c_3_D_100_P_1_b_0_coherent.vcf:17: accross ==> across
data/discosnp-4.4.4/test/ref_discoRes_k_31_c_3_D_100_P_3_b_0_coherent.vcf:14: Alignement ==> Alignment
data/discosnp-4.4.4/test/ref_discoRes_k_31_c_3_D_100_P_3_b_0_coherent.vcf:17: accross ==> across
data/discosnp-4.4.4/test/ref_discoRes_k_31_c_auto_D_100_P_1_b_0_coherent.vcf:14: Alignement ==> Alignment
data/discosnp-4.4.4/test/ref_discoRes_k_31_c_auto_D_100_P_1_b_0_coherent.vcf:17: accross ==> across
data/discosnp-4.4.4/test/simple_test.sh:3: fof ==> for
data/discosnp-4.4.4/test/large_test/large_test.sh:11: fof ==> for
data/discosnp-4.4.4/test/large_test/large_test.sh:19: fof ==> for
data/discosnp-4.4.4/test/large_test/local_large_test.sh:5: fof ==> for
data/discosnp-4.4.4/test/large_test/local_large_test.sh:57: fof ==> for
data/discosnp-4.4.4/test/large_test/local_large_test.sh:113: fof ==> for
data/discosnp-4.4.4/test/large_test/local_large_test.sh:165: fof ==> for
data/discosnp-4.4.4/tools/kissnp2/src/Bubble.cpp:203: avance ==> advance
data/discosnp-4.4.4/tools/kissnp2/src/Bubble.cpp:233: succesfull ==> successful
data/discosnp-4.4.4/tools/kissnp2/src/Bubble.cpp:308: extention ==> extension
data/discosnp-4.4.4/tools/kissnp2/src/Bubble.cpp:588: symetrical ==> symmetrical
data/discosnp-4.4.4/tools/kissnp2/src/Bubble.cpp:957: bellow ==> below
data/discosnp-4.4.4/tools/kissnp2/src/Bubble.cpp:984: symetrical ==> symmetrical
data/discosnp-4.4.4/tools/kissnp2/src/Bubble.hpp:71: overlaping ==> overlapping
data/discosnp-4.4.4/tools/kissnp2/src/Bubble.hpp:72: overlaping ==> overlapping
data/discosnp-4.4.4/tools/kissnp2/src/Bubble.hpp:85: hte ==> the
data/discosnp-4.4.4/tools/kissnp2/src/Bubble.hpp:252: symetrically ==> symmetrically
data/discosnp-4.4.4/tools/kissreads2/src/extension_algorithm.cpp:82: informations ==> information
data/discosnp-4.4.4/tools/kissreads2/src/extension_algorithm.cpp:143: substitions ==> substitutions
data/discosnp-4.4.4/tools/kissreads2/src/extension_algorithm.cpp:209: subsitution ==> substitution
data/discosnp-4.4.4/tools/kissreads2/src/extension_algorithm.cpp:213: substition ==> substitution
data/discosnp-4.4.4/tools/kissreads2/src/extension_algorithm.cpp:256: succesfully ==> successfully
data/discosnp-4.4.4/tools/kissreads2/src/extension_algorithm.cpp:256: existance ==> existence
data/discosnp-4.4.4/tools/kissreads2/src/extension_algorithm.cpp:257: succesfully ==> successfully
data/discosnp-4.4.4/tools/kissreads2/src/extension_algorithm.cpp:274: succesfully ==> successfully
data/discosnp-4.4.4/tools/kissreads2/src/extension_algorithm.cpp:383: whould ==> would
data/discosnp-4.4.4/tools/kissreads2/src/extension_algorithm.cpp:384: boths ==> both
data/discosnp-4.4.4/tools/kissreads2/src/extension_algorithm.cpp:492: repect ==> respect
data/discosnp-4.4.4/tools/kissreads2/src/extension_algorithm.cpp:498: symetrical ==> symmetrical
data/discosnp-4.4.4/tools/kissreads2/src/extension_algorithm.cpp:584: repect ==> respect
data/discosnp-4.4.4/tools/kissreads2/src/extension_algorithm.cpp:591: symetrical ==> symmetrical
data/discosnp-4.4.4/tools/kissreads2/src/extension_algorithm.cpp:634: repect ==> respect
data/discosnp-4.4.4/tools/kissreads2/src/extension_algorithm.cpp:640: symetrical ==> symmetrical
data/discosnp-4.4.4/tools/kissreads2/src/fragment_index.cpp:206: contrained ==> contained, constrained
data/discosnp-4.4.4/tools/kissreads2/src/fragment_info.cpp:58: homogenous ==> homogeneous
data/discosnp-4.4.4/tools/kissreads2/src/fragment_info.h:53: beggining ==> beginning
data/discosnp-4.4.4/tools/kissreads2/src/libchash.cpp:71: appropraite ==> appropriate
data/discosnp-4.4.4/tools/kissreads2/src/libchash.cpp:479: auxilliary ==> auxiliary
data/discosnp-4.4.4/tools/kissreads2/src/libchash.cpp:647: regulr ==> regular
data/discosnp-4.4.4/tools/kissreads2/src/libchash.h:71: appropraite ==> appropriate
data/discosnp-4.4.4/tools/kissreads2/src/outputs.cpp:64: som ==> some
data/discosnp-4.4.4/tools/kissreads2/src/outputs.cpp:68: som ==> some
data/discosnp-4.4.4/tools/kissreads2/src/outputs.cpp:71: som ==> some
data/discosnp-4.4.4/tools/kissreads2/src/outputs.cpp:74: som ==> some
data/discosnp-4.4.4/tools/kissreads2/src/outputs.cpp:134: FORMATING ==> FORMATTING
data/discosnp-4.4.4/tools/kissreads2/src/Kissreads2.cpp:51: maping ==> mapping
data/discosnp-4.4.4/tools/phaser/src/phaser.cpp:44: standart ==> standard
data/discosnp-4.4.4/tools/phaser/src/phaser.cpp:52: maping ==> mapping
data/discosnp-4.4.4/debian/mans/kissreads2.1:24: maping ==> mapping
data/discosnp-4.4.4/debian/mans/run_discoSnp++.sh.1:15: fof ==> for
data/discosnp-4.4.4/debian/mans/run_discoSnp++.sh.1:15: fof ==> for
data/discosnp-4.4.4/debian/mans/run_discoSnpRad.sh.1:15: fof ==> for
data/discosnp-4.4.4/debian/mans/run_discoSnpRad.sh.1:15: fof ==> for
data/discosnp-4.4.4/debian/patches/2to3.patch:56: occured ==> occurred
data/discosnp-4.4.4/debian/patches/2to3.patch:73: puting ==> putting
data/discosnp-4.4.4/debian/patches/2to3.patch:73: formating ==> formatting
data/discosnp-4.4.4/debian/patches/2to3.patch:217: continaing ==> containing
data/discosnp-4.4.4/debian/patches/2to3.patch:501: Additionnally ==> Additionally
data/discosnp-4.4.4/debian/patches/2to3.patch:526: Exemples ==> Examples
data/discosnp-4.4.4/debian/patches/2to3.patch:527: Exemple ==> Example
data/discosnp-4.4.4/debian/patches/adapt_test_scripts.patch:10: fof ==> for
data/discosnp-4.4.4/debian/patches/adapt_test_scripts.patch:11: fof ==> for
data/discosnp-4.4.4/debian/patches/adapt_test_scripts.patch:21: fof ==> for
data/discosnp-4.4.4/debian/patches/adapt_test_scripts.patch:22: fof ==> for
data/discosnp-4.4.4/debian/patches/path_to_readme_file_names.patch:21: VERSIO ==> VERSION
data/discosnp-4.4.4/debian/patches/path_to_readme_file_names.patch:32: Usefull ==> Useful
data/discosnp-4.4.4/debian/patches/path_to_readme_file_names.patch:33: Usefull ==> Useful
data/discosnp-4.4.4/debian/patches/path_to_readme_file_names.patch:46: referenc ==> reference
data/discosnp-4.4.4/debian/patches/spelling.patch:11: wich ==> which
data/discosnp-4.4.4/debian/patches/spelling.patch:12: wich ==> which
data/discosnp-4.4.4/debian/patches/spelling.patch:22: refernece ==> reference
data/discosnp-4.4.4/debian/patches/spelling.patch:42: standart ==> standard
data/discosnp-4.4.4/.pc/path_to_readme_file_names.patch/run_discoSnp++.sh:49: equaly ==> equally
data/discosnp-4.4.4/.pc/path_to_readme_file_names.patch/run_discoSnp++.sh:83: Usefull ==> Useful
data/discosnp-4.4.4/.pc/path_to_readme_file_names.patch/run_discoSnp++.sh:106: fof ==> for
data/discosnp-4.4.4/.pc/path_to_readme_file_names.patch/run_discoSnp++.sh:106: fof ==> for
data/discosnp-4.4.4/.pc/path_to_readme_file_names.patch/run_discoSnp++.sh:136: fof ==> for
data/discosnp-4.4.4/.pc/path_to_readme_file_names.patch/run_discoSnp++.sh:136: fof ==> for
data/discosnp-4.4.4/.pc/spelling.patch/tools/kissnp2/src/Kissnp2.cpp:56: wich ==> which
data/discosnp-4.4.4/.pc/spelling.patch/tools/kissnp2/src/Kissnp2.cpp:57: wich ==> which
data/discosnp-4.4.4/.pc/spelling.patch/tools/kissnp2/src/Kissnp2.cpp:67: refernece ==> reference
data/discosnp-4.4.4/.pc/spelling.patch/tools/kissreads2/src/Kissreads2.cpp:44: standart ==> standard
data/discosnp-4.4.4/.pc/spelling.patch/tools/kissreads2/src/Kissreads2.cpp:51: maping ==> mapping
data/discosnp-4.4.4/.pc/adapt_test_scripts.patch/test/simple_test.sh:3: fof ==> for
data/discosnp-4.4.4/.pc/adapt_test_scripts.patch/test/large_test/local_large_test.sh:5: fof ==> for
data/discosnp-4.4.4/.pc/adapt_test_scripts.patch/test/large_test/local_large_test.sh:57: fof ==> for
data/discosnp-4.4.4/.pc/adapt_test_scripts.patch/test/large_test/local_large_test.sh:113: fof ==> for
data/discosnp-4.4.4/.pc/adapt_test_scripts.patch/test/large_test/local_large_test.sh:165: fof ==> for
data/discosnp-4.4.4/.pc/2to3.patch/run_discoSnp++.sh:49: equaly ==> equally
data/discosnp-4.4.4/.pc/2to3.patch/run_discoSnp++.sh:84: Usefull ==> Useful
data/discosnp-4.4.4/.pc/2to3.patch/run_discoSnp++.sh:107: fof ==> for
data/discosnp-4.4.4/.pc/2to3.patch/run_discoSnp++.sh:107: fof ==> for
data/discosnp-4.4.4/.pc/2to3.patch/run_discoSnp++.sh:137: fof ==> for
data/discosnp-4.4.4/.pc/2to3.patch/run_discoSnp++.sh:137: fof ==> for
data/discosnp-4.4.4/.pc/2to3.patch/run_discoSnp++_storagefile.sh:38: equaly ==> equally
data/discosnp-4.4.4/.pc/2to3.patch/run_discoSnp++_storagefile.sh:72: Usefull ==> Useful
data/discosnp-4.4.4/.pc/2to3.patch/run_discoSnp++_storagefile.sh:95: fof ==> for
data/discosnp-4.4.4/.pc/2to3.patch/run_discoSnp++_storagefile.sh:95: fof ==> for
data/discosnp-4.4.4/.pc/2to3.patch/run_discoSnp++_ML.sh:50: equaly ==> equally
data/discosnp-4.4.4/.pc/2to3.patch/run_discoSnp++_ML.sh:87: Usefull ==> Useful
data/discosnp-4.4.4/.pc/2to3.patch/run_discoSnp++_ML.sh:112: fof ==> for
data/discosnp-4.4.4/.pc/2to3.patch/run_discoSnp++_ML.sh:112: fof ==> for
data/discosnp-4.4.4/.pc/2to3.patch/run_discoSnp++_ML.sh:143: fof ==> for
data/discosnp-4.4.4/.pc/2to3.patch/run_discoSnp++_ML.sh:143: fof ==> for
data/discosnp-4.4.4/.pc/2to3.patch/scripts/ClassVCF_creator.py:71: somme ==> some
data/discosnp-4.4.4/.pc/2to3.patch/scripts/ClassVCF_creator.py:119: dictionnary ==> dictionary
data/discosnp-4.4.4/.pc/2to3.patch/scripts/ClassVCF_creator.py:120: dictionnary ==> dictionary
data/discosnp-4.4.4/.pc/2to3.patch/scripts/ClassVCF_creator.py:122: dictionnary ==> dictionary
data/discosnp-4.4.4/.pc/2to3.patch/scripts/ClassVCF_creator.py:136: dictionnary ==> dictionary
data/discosnp-4.4.4/.pc/2to3.patch/scripts/ClassVCF_creator.py:146: attribut ==> attribute
data/discosnp-4.4.4/.pc/2to3.patch/scripts/ClassVCF_creator.py:152: splitted ==> split
data/discosnp-4.4.4/.pc/2to3.patch/scripts/ClassVCF_creator.py:152: informations ==> information
data/discosnp-4.4.4/.pc/2to3.patch/scripts/ClassVCF_creator.py:451: dictionnary ==> dictionary
data/discosnp-4.4.4/.pc/2to3.patch/scripts/ClassVCF_creator.py:595: somme ==> some
data/discosnp-4.4.4/.pc/2to3.patch/scripts/ClassVCF_creator.py:674: substract ==> subtract
data/discosnp-4.4.4/.pc/2to3.patch/scripts/ClassVCF_creator.py:676: substract ==> subtract
data/discosnp-4.4.4/.pc/2to3.patch/scripts/ClassVCF_creator.py:681: Substracts ==> Subtracts
data/discosnp-4.4.4/.pc/2to3.patch/scripts/ClassVCF_creator.py:774: informations ==> information
data/discosnp-4.4.4/.pc/2to3.patch/scripts/ClassVCF_creator.py:775: attributs ==> attributes
data/discosnp-4.4.4/.pc/2to3.patch/scripts/ClassVCF_creator.py:802: attribut ==> attribute
data/discosnp-4.4.4/.pc/2to3.patch/scripts/ClassVCF_creator.py:817: lenght ==> length
data/discosnp-4.4.4/.pc/2to3.patch/scripts/ClassVCF_creator.py:933: acount ==> account
data/discosnp-4.4.4/.pc/2to3.patch/scripts/ClassVCF_creator.py:942: lenght ==> length
data/discosnp-4.4.4/.pc/2to3.patch/scripts/ClassVCF_creator.py:1045: dictionnary ==> dictionary
data/discosnp-4.4.4/.pc/2to3.patch/scripts/ClassVCF_creator.py:1045: informations ==> information
data/discosnp-4.4.4/.pc/2to3.patch/scripts/ClassVCF_creator.py:1070: dictionnaries ==> dictionaries
data/discosnp-4.4.4/.pc/2to3.patch/scripts/ClassVCF_creator.py:1272: occured ==> occurred
data/discosnp-4.4.4/.pc/2to3.patch/scripts/ClassVCF_creator.py:1272: treatement ==> treatment
data/discosnp-4.4.4/.pc/2to3.patch/scripts/ClassVCF_creator.py:1304: occured ==> occurred
data/discosnp-4.4.4/.pc/2to3.patch/scripts/discoSnp++_to_csv.py:5: puting ==> putting
data/discosnp-4.4.4/.pc/2to3.patch/scripts/discoSnp++_to_csv.py:5: formating ==> formatting
data/discosnp-4.4.4/.pc/2to3.patch/scripts/functionObjectVCF_creator.py:13: accoutn ==> account
data/discosnp-4.4.4/.pc/2to3.patch/scripts/functionObjectVCF_creator.py:28: Supression ==> Suppression
data/discosnp-4.4.4/.pc/2to3.patch/scripts/functionObjectVCF_creator.py:36: attribut ==> attribute
data/discosnp-4.4.4/.pc/2to3.patch/scripts/functionObjectVCF_creator.py:44: Treatement ==> Treatment
data/discosnp-4.4.4/.pc/2to3.patch/scripts/functionObjectVCF_creator.py:44: informations ==> information
data/discosnp-4.4.4/.pc/2to3.patch/scripts/functionObjectVCF_creator.py:46: informations ==> information
data/discosnp-4.4.4/.pc/2to3.patch/scripts/functionObjectVCF_creator.py:58: dictionnary ==> dictionary
data/discosnp-4.4.4/.pc/2to3.patch/scripts/functionObjectVCF_creator.py:58: informations ==> information
data/discosnp-4.4.4/.pc/2to3.patch/scripts/functionObjectVCF_creator.py:76: Treatement ==> Treatment
data/discosnp-4.4.4/.pc/2to3.patch/scripts/functionObjectVCF_creator.py:83: informations ==> information
data/discosnp-4.4.4/.pc/2to3.patch/scripts/functionObjectVCF_creator.py:94: dictionnary ==> dictionary
data/discosnp-4.4.4/.pc/2to3.patch/scripts/functionObjectVCF_creator.py:94: informations ==> information
data/discosnp-4.4.4/.pc/2to3.patch/scripts/functionObjectVCF_creator.py:137: dictionnary ==> dictionary
data/discosnp-4.4.4/.pc/2to3.patch/scripts/functionObjectVCF_creator.py:255: Alignement ==> Alignment
data/discosnp-4.4.4/.pc/2to3.patch/scripts/functionObjectVCF_creator.py:266: accross ==> across
data/discosnp-4.4.4/.pc/2to3.patch/scripts/VCF_creator.py:44: uncorrectly ==> incorrectly
data/discosnp-4.4.4/.pc/2to3.patch/scripts/VCF_creator.py:123: splitted ==> split
data/discosnp-4.4.4/.pc/2to3.patch/scripts/VCF_creator.py:129: splitted ==> split
data/discosnp-4.4.4/.pc/2to3.patch/scripts/VCF_creator.py:151: Treatement ==> Treatment
data/discosnp-4.4.4/.pc/2to3.patch/scripts/format_phased_variants_for_haplotyping.py:13: continaing ==> containing
data/discosnp-4.4.4/.pc/2to3.patch/scripts/format_phased_variants_for_haplotyping.py:14: shoud ==> should
data/discosnp-4.4.4/.pc/2to3.patch/scripts/format_phased_variants_for_haplotyping.py:44: searche ==> search, searched
data/discosnp-4.4.4/.pc/2to3.patch/scripts/from_phased_alleles_to_clusters.sh:29: suppres ==> suppress
data/discosnp-4.4.4/.pc/2to3.patch/scripts/from_phased_alleles_to_clusters.sh:42: leas ==> least, lease
data/discosnp-4.4.4/.pc/2to3.patch/scripts/redundancy_removal_discosnp.py:19: nothin ==> nothing
data/discosnp-4.4.4/.pc/2to3.patch/scripts/simulations/multiple_samples_simulator.sh:23: lenght ==> length
data/discosnp-4.4.4/.pc/2to3.patch/scripts/simulations/multiple_samples_simulator.sh:55: lenght ==> length
data/discosnp-4.4.4/.pc/2to3.patch/scripts/k3000/K3000_gfa_to_dat.py:205: writen ==> written
data/discosnp-4.4.4/.pc/2to3.patch/scripts/k3000/K3000_gfa_to_dat.py:261: writen ==> written
data/discosnp-4.4.4/.pc/2to3.patch/scripts/k3000/K3000_gfa_to_dat.py:325: writen ==> written
data/discosnp-4.4.4/.pc/2to3.patch/scripts/k3000/K3000.py:38: Exemple ==> Example
data/discosnp-4.4.4/.pc/2to3.patch/scripts/k3000/K3000.py:104: extention ==> extension
data/discosnp-4.4.4/.pc/2to3.patch/scripts/k3000/K3000.py:105: extention ==> extension
data/discosnp-4.4.4/.pc/2to3.patch/scripts/k3000/K3000.py:105: extention ==> extension
data/discosnp-4.4.4/.pc/2to3.patch/scripts/k3000/K3000.py:105: extentions ==> extensions
data/discosnp-4.4.4/.pc/2to3.patch/scripts/k3000/K3000.py:107: extention ==> extension
data/discosnp-4.4.4/.pc/2to3.patch/scripts/k3000/K3000.py:120: extentions ==> extensions
data/discosnp-4.4.4/.pc/2to3.patch/scripts/k3000/K3000.py:123: extention ==> extension
data/discosnp-4.4.4/.pc/2to3.patch/scripts/k3000/K3000_node_ids_to_node_sequences.py:119: retreive ==> retrieve
data/discosnp-4.4.4/.pc/2to3.patch/scripts/k3000/K3000_node_ids_to_node_sequences.py:132: retreive ==> retrieve
data/discosnp-4.4.4/.pc/2to3.patch/scripts/k3000/K3000_node_ids_to_node_sequences.py:145: shold ==> should, hold, sold
data/discosnp-4.4.4/.pc/2to3.patch/scripts/k3000/K3000_node_ids_to_node_sequences.py:145: happend ==> happened, happens, happen
data/discosnp-4.4.4/.pc/2to3.patch/scripts/k3000/run.sh:110: succesion ==> succession
data/discosnp-4.4.4/.pc/2to3.patch/scripts/validation_scripts/compare_vcf_disco_pos_allele_only.py:22: usefull ==> useful
data/discosnp-4.4.4/.pc/2to3.patch/discoSnpRAD/run_discoSnpRad.sh:99: Usefull ==> Useful
data/discosnp-4.4.4/.pc/2to3.patch/discoSnpRAD/run_discoSnpRad.sh:120: fof ==> for
data/discosnp-4.4.4/.pc/2to3.patch/discoSnpRAD/run_discoSnpRad.sh:120: fof ==> for
data/discosnp-4.4.4/.pc/2to3.patch/discoSnpRAD/post-processing_scripts/README.md:63: Additionnally ==> Additionally
data/discosnp-4.4.4/.pc/2to3.patch/discoSnpRAD/post-processing_scripts/README.md:73: fof ==> for
data/discosnp-4.4.4/.pc/2to3.patch/discoSnpRAD/post-processing_scripts/README.md:75: fof ==> for
data/discosnp-4.4.4/.pc/2to3.patch/discoSnpRAD/post-processing_scripts/add_cluster_info_to_mapped_vcf.py:32: splitted ==> split
data/discosnp-4.4.4/.pc/2to3.patch/discoSnpRAD/post-processing_scripts/add_cluster_info_to_mapped_vcf.py:33: splitted ==> split
data/discosnp-4.4.4/.pc/2to3.patch/discoSnpRAD/post-processing_scripts/add_cluster_info_to_mapped_vcf.py:34: splitted ==> split
data/discosnp-4.4.4/.pc/2to3.patch/discoSnpRAD/post-processing_scripts/add_cluster_info_to_mapped_vcf.py:52: splitted ==> split
data/discosnp-4.4.4/.pc/2to3.patch/discoSnpRAD/post-processing_scripts/add_cluster_info_to_mapped_vcf.py:53: splitted ==> split
data/discosnp-4.4.4/.pc/2to3.patch/discoSnpRAD/post-processing_scripts/add_cluster_info_to_mapped_vcf.py:57: splitted ==> split
data/discosnp-4.4.4/.pc/2to3.patch/discoSnpRAD/post-processing_scripts/add_cluster_info_to_mapped_vcf.py:58: splitted ==> split
data/discosnp-4.4.4/.pc/2to3.patch/discoSnpRAD/post-processing_scripts/add_cluster_info_to_mapped_vcf.py:58: splitted ==> split
data/discosnp-4.4.4/.pc/2to3.patch/discoSnpRAD/post-processing_scripts/filter_vcf_by_indiv_cov_max_missing_and_maf.py:112: splitted ==> split
data/discosnp-4.4.4/.pc/2to3.patch/discoSnpRAD/post-processing_scripts/filter_vcf_by_indiv_cov_max_missing_and_maf.py:115: splitted ==> split
data/discosnp-4.4.4/.pc/2to3.patch/discoSnpRAD/post-processing_scripts/filter_vcf_by_indiv_cov_max_missing_and_maf.py:121: splitted ==> split
data/discosnp-4.4.4/.pc/2to3.patch/doc/discoSnp_user_guide.txt:17: Exemples ==> Examples
data/discosnp-4.4.4/.pc/2to3.patch/doc/discoSnp_user_guide.txt:39: fof ==> for
data/discosnp-4.4.4/.pc/2to3.patch/doc/discoSnp_user_guide.txt:65: wich ==> which
data/discosnp-4.4.4/.pc/2to3.patch/doc/discoSnp_user_guide.txt:110: fof ==> for
data/discosnp-4.4.4/.pc/2to3.patch/doc/discoSnp_user_guide.txt:113: fof ==> for
data/discosnp-4.4.4/.pc/2to3.patch/doc/discoSnp_user_guide.txt:119: fof ==> for
data/discosnp-4.4.4/.pc/2to3.patch/doc/discoSnp_user_guide.txt:123: fof ==> for
data/discosnp-4.4.4/.pc/2to3.patch/doc/discoSnp_user_guide.txt:134: Correspondance ==> Correspondence
data/discosnp-4.4.4/.pc/2to3.patch/doc/discoSnp_user_guide.txt:135: correspondance ==> correspondence
data/discosnp-4.4.4/.pc/2to3.patch/doc/discoSnp_user_guide.txt:149: fof ==> for
data/discosnp-4.4.4/.pc/2to3.patch/doc/discoSnp_user_guide.txt:174: sequece ==> sequence
data/discosnp-4.4.4/.pc/2to3.patch/doc/discoSnp_user_guide.txt:180: bellow ==> below
data/discosnp-4.4.4/.pc/2to3.patch/doc/discoSnp_user_guide.txt:180: correspondance ==> correspondence
data/discosnp-4.4.4/.pc/2to3.patch/doc/discoSnp_user_guide.txt:196: fof ==> for
data/discosnp-4.4.4/.pc/2to3.patch/doc/discoSnp_user_guide.txt:199: fof ==> for
data/discosnp-4.4.4/.pc/2to3.patch/doc/discoSnp_user_guide.txt:206: Exemples ==> Examples
data/discosnp-4.4.4/.pc/2to3.patch/doc/discoSnp_user_guide.txt:207: Exemple ==> Example
data/discosnp-4.4.4/.pc/2to3.patch/doc/discoSnp_user_guide.txt:215: Exemple ==> Example
data/discosnp-4.4.4/.pc/shell_syntax.patch/discoSnpRAD/clustering_scripts/discoRAD_clustering.sh:21: informations ==> information
data/discosnp-4.4.4/.pc/shell_syntax.patch/discoSnpRAD/clustering_scripts/discoRAD_clustering.sh:160: fof ==> for
data/discosnp-4.4.4/.pc/shell_syntax.patch/discoSnpRAD/clustering_scripts/discoRAD_clustering.sh:162: fof ==> for
data/discosnp-4.4.4/.pc/shell_syntax.patch/discoSnpRAD/clustering_scripts/discoRAD_clustering.sh:164: fof ==> for
data/discosnp-4.4.4/.pc/shell_syntax.patch/discoSnpRAD/clustering_scripts/discoRAD_clustering.sh:167: fof ==> for