data/dssp-3.0.0/src/mas.cpp:79: ba ==> by, be
data/dssp-3.0.0/src/mas.cpp:547: substract ==> subtract
data/dssp-3.0.0/src/mas.cpp:572: ba ==> by, be
data/dssp-3.0.0/src/mas.cpp:1080: ba ==> by, be
data/dssp-3.0.0/src/mas.cpp:1082: ba ==> by, be
data/dssp-3.0.0/src/mas.cpp:1100: ba ==> by, be
data/dssp-3.0.0/src/mas.cpp:1102: ba ==> by, be
data/dssp-3.0.0/src/mas.cpp:1138: ba ==> by, be
data/dssp-3.0.0/src/mas.cpp:1143: ba ==> by, be
data/dssp-3.0.0/src/mas.cpp:1159: ba ==> by, be
data/dssp-3.0.0/src/mas.cpp:1340: ba ==> by, be
data/dssp-3.0.0/src/mas.cpp:1342: ba ==> by, be
data/dssp-3.0.0/src/mkdssp.cpp:39: ba ==> by, be
data/dssp-3.0.0/src/mkdssp.cpp:71: te ==> the, be, we
data/dssp-3.0.0/src/mkdssp.cpp:126: ba ==> by, be
data/dssp-3.0.0/src/mkdssp.cpp:131: ba ==> by, be
data/dssp-3.0.0/src/mkdssp.cpp:143: ba ==> by, be
data/dssp-3.0.0/src/mkdssp.cpp:143: ba ==> by, be
data/dssp-3.0.0/src/mkdssp.cpp:165: ba ==> by, be
data/dssp-3.0.0/src/mkdssp.cpp:167: ba ==> by, be
data/dssp-3.0.0/src/iocif.cpp:17: ba ==> by, be
data/dssp-3.0.0/src/iocif.cpp:158: ba ==> by, be
data/dssp-3.0.0/src/structure.cpp:28: ba ==> by, be
data/dssp-3.0.0/src/structure.cpp:112: ba ==> by, be
data/dssp-3.0.0/src/structure.cpp:113: ba ==> by, be
data/dssp-3.0.0/src/structure.cpp:149: ba ==> by, be
data/dssp-3.0.0/src/structure.cpp:308: SER ==> SET
data/dssp-3.0.0/src/structure.cpp:1089: ba ==> by, be
data/dssp-3.0.0/src/structure.cpp:1092: ba ==> by, be
data/dssp-3.0.0/src/structure.cpp:1100: ba ==> by, be
data/dssp-3.0.0/src/structure.cpp:1102: ba ==> by, be
data/dssp-3.0.0/src/structure.cpp:1110: ba ==> by, be
data/dssp-3.0.0/src/structure.cpp:1112: ba ==> by, be
data/dssp-3.0.0/src/structure.cpp:1120: ba ==> by, be
data/dssp-3.0.0/src/structure.cpp:1122: ba ==> by, be
data/dssp-3.0.0/src/structure.cpp:1130: ba ==> by, be
data/dssp-3.0.0/src/structure.cpp:1132: ba ==> by, be
data/dssp-3.0.0/src/structure.cpp:1138: ba ==> by, be
data/dssp-3.0.0/src/structure.cpp:1144: ba ==> by, be
data/dssp-3.0.0/src/structure.cpp:1147: ba ==> by, be
data/dssp-3.0.0/src/structure.cpp:1153: ba ==> by, be
data/dssp-3.0.0/src/structure.cpp:1157: ba ==> by, be
data/dssp-3.0.0/src/structure.cpp:1168: ba ==> by, be
data/dssp-3.0.0/src/structure.cpp:1188: ba ==> by, be
data/dssp-3.0.0/src/structure.cpp:1188: ba ==> by, be
data/dssp-3.0.0/src/structure.cpp:1194: ba ==> by, be
data/dssp-3.0.0/src/structure.cpp:1200: ba ==> by, be
data/dssp-3.0.0/src/structure.cpp:1202: ba ==> by, be
data/dssp-3.0.0/src/structure.cpp:1206: ba ==> by, be
data/dssp-3.0.0/src/structure.cpp:1211: ba ==> by, be
data/dssp-3.0.0/src/structure.cpp:1236: ba ==> by, be
data/dssp-3.0.0/src/structure.cpp:1391: ba ==> by, be
data/dssp-3.0.0/src/structure.h:97: ser ==> set
data/dssp-3.0.0/doc/mkdssp.1:152: TE ==> THE, BE, WE
data/dssp-3.0.0/debian/examples/5bmg.pdb:4301: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4302: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4303: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4304: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4305: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4306: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4307: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4308: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4309: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4310: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4311: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4312: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4313: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4314: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4315: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4316: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4317: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4318: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4319: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4320: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4321: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4322: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4323: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4324: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4325: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4326: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4327: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4328: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4329: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4330: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4331: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4332: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4333: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4334: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4335: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4336: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4337: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4338: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4339: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4340: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4341: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4342: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4343: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4344: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4345: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4346: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4347: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4348: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4349: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4350: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4351: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4352: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4353: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4354: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4355: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4356: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4357: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4358: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4359: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4360: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4361: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4362: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4363: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4364: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4365: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4366: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4367: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4368: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4369: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4370: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4371: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4372: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4373: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4374: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4375: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4376: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4377: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4378: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4379: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4380: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4381: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4382: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4383: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4384: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4385: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4386: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4387: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4388: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4389: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4390: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4391: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4392: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4393: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4394: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4395: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4396: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4397: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4398: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4399: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4400: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4401: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4402: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4403: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4404: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4405: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4406: CONECT ==> CONNECT
data/dssp-3.0.0/debian/examples/5bmg.pdb:4407: CONECT ==> CONNECT
data/dssp-3.0.0/.pc/boost1.65.patch/src/structure.cpp:28: ba ==> by, be
data/dssp-3.0.0/.pc/boost1.65.patch/src/structure.cpp:112: ba ==> by, be
data/dssp-3.0.0/.pc/boost1.65.patch/src/structure.cpp:113: ba ==> by, be
data/dssp-3.0.0/.pc/boost1.65.patch/src/structure.cpp:149: ba ==> by, be
data/dssp-3.0.0/.pc/boost1.65.patch/src/structure.cpp:308: SER ==> SET
data/dssp-3.0.0/.pc/boost1.65.patch/src/structure.cpp:1089: ba ==> by, be
data/dssp-3.0.0/.pc/boost1.65.patch/src/structure.cpp:1092: ba ==> by, be
data/dssp-3.0.0/.pc/boost1.65.patch/src/structure.cpp:1100: ba ==> by, be
data/dssp-3.0.0/.pc/boost1.65.patch/src/structure.cpp:1102: ba ==> by, be
data/dssp-3.0.0/.pc/boost1.65.patch/src/structure.cpp:1110: ba ==> by, be
data/dssp-3.0.0/.pc/boost1.65.patch/src/structure.cpp:1112: ba ==> by, be
data/dssp-3.0.0/.pc/boost1.65.patch/src/structure.cpp:1120: ba ==> by, be
data/dssp-3.0.0/.pc/boost1.65.patch/src/structure.cpp:1122: ba ==> by, be
data/dssp-3.0.0/.pc/boost1.65.patch/src/structure.cpp:1130: ba ==> by, be
data/dssp-3.0.0/.pc/boost1.65.patch/src/structure.cpp:1132: ba ==> by, be
data/dssp-3.0.0/.pc/boost1.65.patch/src/structure.cpp:1138: ba ==> by, be
data/dssp-3.0.0/.pc/boost1.65.patch/src/structure.cpp:1144: ba ==> by, be
data/dssp-3.0.0/.pc/boost1.65.patch/src/structure.cpp:1147: ba ==> by, be
data/dssp-3.0.0/.pc/boost1.65.patch/src/structure.cpp:1153: ba ==> by, be
data/dssp-3.0.0/.pc/boost1.65.patch/src/structure.cpp:1157: ba ==> by, be
data/dssp-3.0.0/.pc/boost1.65.patch/src/structure.cpp:1168: ba ==> by, be
data/dssp-3.0.0/.pc/boost1.65.patch/src/structure.cpp:1188: ba ==> by, be
data/dssp-3.0.0/.pc/boost1.65.patch/src/structure.cpp:1188: ba ==> by, be
data/dssp-3.0.0/.pc/boost1.65.patch/src/structure.cpp:1194: ba ==> by, be
data/dssp-3.0.0/.pc/boost1.65.patch/src/structure.cpp:1200: ba ==> by, be
data/dssp-3.0.0/.pc/boost1.65.patch/src/structure.cpp:1202: ba ==> by, be
data/dssp-3.0.0/.pc/boost1.65.patch/src/structure.cpp:1206: ba ==> by, be
data/dssp-3.0.0/.pc/boost1.65.patch/src/structure.cpp:1211: ba ==> by, be
data/dssp-3.0.0/.pc/boost1.65.patch/src/structure.cpp:1236: ba ==> by, be
data/dssp-3.0.0/.pc/boost1.65.patch/src/structure.cpp:1391: ba ==> by, be
data/dssp-3.0.0/.pc/boost1.65.patch/src/structure.h:97: ser ==> set