data/htsjdk-2.23.0+dfsg/README.md:123: incompatiblities ==> incompatibilities
data/htsjdk-2.23.0+dfsg/README.md:124: exising ==> existing
data/htsjdk-2.23.0+dfsg/build.gradle:28: testng ==> testing
data/htsjdk-2.23.0+dfsg/build.gradle:28: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/samtools/AbstractBAMFileIndex.java:334: maxiumum ==> maximum
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/samtools/BAMFileReader.java:397: ths ==> the, this
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/samtools/BAMRecord.java:54: existance ==> existence
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/samtools/BAMSBIIndexer.java:70: blockIn ==> blocking
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/samtools/BAMSBIIndexer.java:71: blockIn ==> blocking
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/samtools/BAMSBIIndexer.java:77: blockIn ==> blocking
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/samtools/BAMSBIIndexer.java:79: blockIn ==> blocking
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/samtools/BAMSBIIndexer.java:83: blockIn ==> blocking
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/samtools/BamFileIoUtils.java:88: blockIn ==> blocking
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/samtools/BamFileIoUtils.java:89: blockIn ==> blocking
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/samtools/BamFileIoUtils.java:90: blockIn ==> blocking
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/samtools/BamFileIoUtils.java:96: blockIn ==> blocking
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/samtools/BamFileIoUtils.java:101: blockIn ==> blocking
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/samtools/BamFileIoUtils.java:102: blockIn ==> blocking
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/samtools/BamIndexValidator.java:112: browseable ==> browsable
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/samtools/BamIndexValidator.java:122: browseable ==> browsable
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/samtools/BamIndexValidator.java:201: browseable ==> browsable
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/samtools/ComparableSamRecordIterator.java:45: fo ==> of, for
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/samtools/Defaults.java:52: outputing ==> outputting
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/samtools/Defaults.java:58: outputing ==> outputting
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/samtools/SAMFileWriterImpl.java:229: hava ==> have, have a
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/samtools/SAMReadGroupRecord.java:48: FO ==> OF, FOR
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/samtools/SAMSequenceDictionary.java:210: fo ==> of, for
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/samtools/SAMSequenceDictionary.java:241: ths ==> the, this
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/samtools/SAMTag.java:94: compatibilty ==> compatibility
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/samtools/SAMUtils.java:50: Utilty ==> Utility
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/samtools/SAMUtils.java:346: binar ==> binary
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/samtools/SAMUtils.java:360: binar ==> binary
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/samtools/SAMUtils.java:523: WTH ==> WITH
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/samtools/SRAFileReader.java:188: browseable ==> browsable
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/samtools/SRAFileReader.java:202: browseable ==> browsable
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/samtools/SRAIndex.java:90: withing ==> within
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/samtools/SRAIterator.java:134: withing ==> within
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/samtools/SRAIterator.java:163: alignemnt ==> alignment
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/samtools/SamFileHeaderMerger.java:549: seqeunce ==> sequence
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/samtools/SamFileValidator.java:479: coodinates ==> coordinates
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/samtools/SamInputResource.java:105: GZIPed ==> gzipped
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/samtools/SamReader.java:107: browseable ==> browsable
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/samtools/SamReader.java:118: browseable ==> browsable
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/samtools/SamReader.java:153: ths ==> the, this
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/samtools/SamReader.java:477: browseable ==> browsable
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/samtools/cram/build/CRAMReferenceRegion.java:67: specifed ==> specified
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/samtools/cram/ref/ReferenceContext.java:84: refernce ==> reference
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/samtools/cram/structure/AlignmentContext.java:74: refernce ==> reference
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/samtools/cram/structure/CRAMRecordReadFeatures.java:245: fo ==> of, for
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/samtools/cram/structure/CompressionHeader.java:50: tage ==> stage, take, tag, tagged
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/samtools/cram/structure/Container.java:284: thats ==> that's
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/samtools/cram/structure/DataSeries.java:83: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/samtools/fastq/FastqEncoder.java:116: overriden ==> overridden
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/samtools/reference/FastaReferenceWriter.java:652: chracter ==> character
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/samtools/reference/FastaReferenceWriter.java:674: chracter ==> character
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/samtools/reference/ReferenceSequence.java:61: interally ==> internally
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/samtools/seekablestream/SeekableFTPStreamHelper.java:138: resue ==> reuse, rescue
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/samtools/sra/SRAAlignmentIterator.java:75: withing ==> within
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/samtools/sra/SRAUnalignmentIterator.java:68: withing ==> within
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/samtools/util/AbstractAsyncWriter.java:82: noone ==> no one
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/samtools/util/BlockCompressedOutputStream.java:107: tbe ==> the
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/samtools/util/CollectionUtil.java:69: inBetween ==> between, in between
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/samtools/util/CollectionUtil.java:70: inBetween ==> between, in between
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/samtools/util/CollectionUtil.java:73: inBetween ==> between, in between
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/samtools/util/DateParser.java:38: derivitive ==> derivative
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/samtools/util/DateParser.java:39: derivitive ==> derivative
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/samtools/util/Histogram.java:201: histgram ==> histogram
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/samtools/util/SequenceUtil.java:352: aligment ==> alignment
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/samtools/util/SequenceUtil.java:925: Convets ==> Converts
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/samtools/util/SequenceUtil.java:1068: Ths ==> The, this
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/samtools/util/ftp/FTPReply.java:87: postive ==> positive
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/samtools/util/ftp/FTPReply.java:106: postive ==> positive
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/tribble/bed/BEDCodec.java:251: co-ordinates ==> coordinates
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/tribble/bed/FullBEDFeature.java:83: neccessarily ==> necessarily
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/tribble/bed/FullBEDFeature.java:232: neccessarily ==> necessarily
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/tribble/example/CountRecords.java:67: doesnt' ==> doesn't
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/tribble/gff/Gff3Codec.java:115: compatability ==> compatibility
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/tribble/gff/Gff3Codec.java:174: immediatly ==> immediately
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/tribble/gff/Gff3Codec.java:474: overriden ==> overridden
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/tribble/index/AbstractIndex.java:156: overriden ==> overridden
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/tribble/index/interval/IntervalTree.java:107: effecient ==> efficient
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/tribble/index/interval/IntervalTreeIndex.java:99: indicies ==> indices
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/tribble/index/interval/IntervalTreeIndex.java:100: indicies ==> indices
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/tribble/index/linear/LinearIndex.java:457: setTS ==> sets
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/tribble/util/LittleEndianOutputStream.java:118: reseting ==> resetting
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/tribble/util/ParsingUtils.java:153: seperator ==> separator
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/tribble/util/popgen/HardyWeinbergCalculation.java:40: frequences ==> frequencies
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/utils/ClassFinder.java:174: equivelant ==> equivalent
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/variant/bcf2/BCF2Utils.java:75: identifers ==> identifiers
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/variant/variantcontext/FastGenotype.java:119: Implmenting ==> Implementing
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/variant/variantcontext/Genotype.java:600: sting ==> string
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/variant/variantcontext/Genotype.java:600: seperated ==> separated
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/variant/variantcontext/GenotypeJEXLContext.java:13: everytime ==> every time
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/variant/variantcontext/GenotypeType.java:43: availble ==> available
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/variant/variantcontext/VariantContext.java:1163: fo ==> of, for
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/variant/variantcontext/VariantContext.java:1175: fo ==> of, for
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/variant/variantcontext/VariantJEXLContext.java:41: everytime ==> every time
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/variant/variantcontext/writer/BCF2FieldWriter.java:204: fo ==> of, for
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/variant/vcf/AbstractVCFCodec.java:104: reencode ==> re-encode
data/htsjdk-2.23.0+dfsg/src/main/java/htsjdk/variant/vcf/VCFHeader.java:81: auxillary ==> auxiliary
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/TestClassDependenceTest.java:4: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/TestClassDependenceTest.java:5: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/TestClassDependenceTest.java:6: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/TestClassDependenceTest.java:7: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/TestClassDependenceTest.java:8: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/TestDataProviders.java:4: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/TestDataProviders.java:5: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/TestDataProviders.java:6: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/TestDataProviders.java:48: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/AbstractBAMFileIndexTest.java:5: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/AbstractBAMFileIndexTest.java:6: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/BAMCigarOverflowTest.java:5: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/BAMCigarOverflowTest.java:9: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/BAMFileIndexTest.java:28: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/BAMFileIndexTest.java:29: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/BAMFileIndexTest.java:30: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/BAMFileIndexTest.java:42: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/BAMFileReaderTest.java:7: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/BAMFileReaderTest.java:8: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/BAMFileReaderTest.java:9: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/BAMFileSpanTest.java:6: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/BAMFileSpanTest.java:7: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/BAMFileSpanTest.java:8: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/BAMFileWriterTest.java:33: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/BAMFileWriterTest.java:34: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/BAMFileWriterTest.java:35: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/BAMFileWriterTest.java:52: readD ==> re-add, read
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/BAMIndexValidatorTest.java:4: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/BAMIndexValidatorTest.java:5: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/BAMIndexWriterTest.java:29: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/BAMIndexWriterTest.java:30: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/BAMIndexWriterTest.java:36: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/BAMIndexWriterTest.java:37: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/BAMIteratorTest.java:29: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/BAMIteratorTest.java:30: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/BAMIteratorTest.java:31: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/BAMMergerTest.java:36: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/BAMMergerTest.java:37: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/BAMQueryMultipleIntervalsIteratorFilterTest.java:5: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/BAMQueryMultipleIntervalsIteratorFilterTest.java:6: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/BAMQueryMultipleIntervalsIteratorFilterTest.java:7: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/BAMSBIIndexerTest.java:31: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/BAMSBIIndexerTest.java:32: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/BaiEqualityChecker.java:26: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/BinTest.java:28: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/BinTest.java:29: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/BinningIndexBuilderTest.java:4: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/BinningIndexBuilderTest.java:5: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/BinningIndexBuilderTest.java:6: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/CRAMAllEncodingStrategiesTest.java:12: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/CRAMAllEncodingStrategiesTest.java:13: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/CRAMAllEncodingStrategiesTest.java:14: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/CRAMBAIIndexerTest.java:11: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/CRAMBAIIndexerTest.java:12: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/CRAMBAIIndexerTest.java:19: thats ==> that's
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/CRAMBAIIndexerTest.java:133: thats ==> that's
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/CRAMCRAIIndexerTest.java:12: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/CRAMCRAIIndexerTest.java:13: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/CRAMComplianceTest.java:13: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/CRAMComplianceTest.java:14: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/CRAMComplianceTest.java:15: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/CRAMContainerStreamWriterTest.java:7: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/CRAMContainerStreamWriterTest.java:8: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/CRAMEdgeCasesTest.java:8: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/CRAMEdgeCasesTest.java:9: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/CRAMEdgeCasesTest.java:10: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/CRAMFileBAIIndexTest.java:17: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/CRAMFileBAIIndexTest.java:18: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/CRAMFileBAIIndexTest.java:19: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/CRAMFileCRAIIndexTest.java:17: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/CRAMFileCRAIIndexTest.java:18: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/CRAMFileCRAIIndexTest.java:19: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/CRAMFileReaderTest.java:31: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/CRAMFileReaderTest.java:32: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/CRAMFileReaderTest.java:33: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/CRAMFileWriterTest.java:33: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/CRAMFileWriterTest.java:34: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/CRAMFileWriterTest.java:35: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/CRAMFileWriterTest.java:36: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/CRAMFileWriterWithIndexTest.java:11: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/CRAMFileWriterWithIndexTest.java:12: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/CRAMFileWriterWithIndexTest.java:13: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/CRAMIndexPermutationsTests.java:8: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/CRAMIndexPermutationsTests.java:9: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/CRAMIndexPermutationsTests.java:10: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/CRAMIndexPermutationsTests.java:222: larget ==> larger, largest, target
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/CRAMIndexQueryTest.java:29: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/CRAMIndexQueryTest.java:30: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/CRAMIndexQueryTest.java:31: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/CRAMIndexQueryTest.java:32: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/CRAMIndexTestHelper.java:9: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/CRAMIteratorTest.java:6: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/CRAMIteratorTest.java:7: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/CRAMMergerTest.java:40: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/CRAMMergerTest.java:41: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/CRAMReferencelessTest.java:6: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/CRAMReferencelessTest.java:7: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/CRAMSliceMD5Test.java:14: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/CRAMSliceMD5Test.java:15: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/CSIIndexTest.java:4: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/CSIIndexTest.java:5: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/CSIIndexTest.java:6: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/CSIIndexTest.java:7: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/CachingBAMFileIndexTest.java:7: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/CachingBAMFileIndexTest.java:8: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/ChunkTest.java:27: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/ChunkTest.java:28: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/CigarCodecTest.java:27: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/CigarCodecTest.java:28: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/CigarOperatorUnitTest.java:28: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/CigarOperatorUnitTest.java:29: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/CigarOperatorUnitTest.java:30: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/CigarTest.java:27: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/CigarTest.java:28: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/CigarTest.java:29: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/CramContainerHeaderIteratorTest.java:10: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/CramContainerHeaderIteratorTest.java:11: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/DownsamplingIteratorTests.java:5: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/DownsamplingIteratorTests.java:6: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/DuplicateScoringStrategyTest.java:4: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/DuplicateScoringStrategyTest.java:5: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/DuplicateScoringStrategyTest.java:6: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/DuplicateSetIteratorTest.java:4: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/DuplicateSetIteratorTest.java:5: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/GenomicIndexUtilTest.java:4: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/GenomicIndexUtilTest.java:5: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/GenomicIndexUtilTest.java:6: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/MergingSamRecordIteratorGroupCollisionTest.java:28: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/MergingSamRecordIteratorGroupCollisionTest.java:29: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/MergingSamRecordIteratorGroupCollisionTest.java:30: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/MergingSamRecordIteratorTest.java:28: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/MergingSamRecordIteratorTest.java:29: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/MergingSamRecordIteratorTest.java:165: garantee ==> guarantee
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/MergingSamRecordIteratorTest.java:247: tHi ==> the, this
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/MergingSamRecordIteratorTest.java:247: tHi ==> the, this
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/PathInputResourceTest.java:10: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/PathInputResourceTest.java:11: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/ProgramRecordChainingTest.java:27: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/ProgramRecordChainingTest.java:28: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/QueryIntervalTest.java:4: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/QueryIntervalTest.java:5: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SAMBinaryTagAndValueUnitTest.java:5: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SAMBinaryTagAndValueUnitTest.java:6: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SAMBinaryTagAndValueUnitTest.java:7: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SAMCloneTest.java:27: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SAMCloneTest.java:28: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SAMCloneTest.java:39: readD ==> re-add, read
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SAMFileHeaderTest.java:27: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SAMFileHeaderTest.java:28: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SAMFileHeaderTest.java:29: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SAMFileWriterFactoryTest.java:34: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SAMFileWriterFactoryTest.java:35: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SAMFileWriterFactoryTest.java:36: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SAMFlagTest.java:28: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SAMFlagTest.java:29: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SAMProgramRecordTest.java:27: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SAMProgramRecordTest.java:28: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SAMReadGroupRecordTest.java:28: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SAMReadGroupRecordTest.java:29: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SAMReadGroupRecordTest.java:30: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SAMRecordDuplicateComparatorTest.java:27: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SAMRecordDuplicateComparatorTest.java:28: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SAMRecordQueryHashComparatorTest.java:28: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SAMRecordQueryHashComparatorTest.java:29: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SAMRecordQueryNameComparatorTest.java:28: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SAMRecordQueryNameComparatorTest.java:29: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SAMRecordQueryNameComparatorTest.java:30: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SAMRecordSetBuilderTest.java:12: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SAMRecordSetBuilderTest.java:13: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SAMRecordUnitTest.java:33: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SAMRecordUnitTest.java:34: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SAMRecordUnitTest.java:35: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SAMSequenceDictionaryCodecTest.java:31: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SAMSequenceDictionaryCodecTest.java:32: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SAMSequenceDictionaryCodecTest.java:39: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SAMSequenceDictionaryCodecTest.java:40: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SAMSequenceDictionaryTest.java:30: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SAMSequenceDictionaryTest.java:31: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SAMSequenceDictionaryTest.java:32: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SAMSequenceRecordTest.java:28: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SAMSequenceRecordTest.java:29: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SAMSequenceRecordTest.java:30: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SAMTextReaderTest.java:29: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SAMTextReaderTest.java:30: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SAMTextReaderTest.java:31: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SAMTextWriterTest.java:27: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SAMTextWriterTest.java:28: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SAMTextWriterTest.java:42: readD ==> re-add, read
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SAMUtilsTest.java:27: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SAMUtilsTest.java:28: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SAMUtilsTest.java:29: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SamFileHeaderMergerTest.java:33: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SamFileHeaderMergerTest.java:34: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SamFileHeaderMergerTest.java:35: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SamFileHeaderMergerTest.java:50: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SamFileHeaderMergerTest.java:115: seqeunce ==> sequence
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SamFilesTest.java:7: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SamFilesTest.java:8: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SamFilesTest.java:9: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SamFlagFieldTest.java:4: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SamFlagFieldTest.java:5: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SamFlagFieldTest.java:6: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SamHeaderRecordComparatorTest.java:28: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SamHeaderRecordComparatorTest.java:29: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SamHeaderRecordComparatorTest.java:30: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SamIndexesTest.java:9: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SamIndexesTest.java:10: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SamPairUtilTest.java:28: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SamPairUtilTest.java:29: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SamPairUtilTest.java:30: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SamReaderSortTest.java:29: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SamReaderSortTest.java:30: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SamReaderSortTest.java:31: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SamReaderTest.java:29: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SamReaderTest.java:30: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SamReaderTest.java:31: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SamSpecIntTest.java:29: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SamSpecIntTest.java:30: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SamSpecIntTest.java:31: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SequenceNameTruncationAndValidationTest.java:28: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SequenceNameTruncationAndValidationTest.java:29: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SequenceNameTruncationAndValidationTest.java:30: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/TextTagCodecTest.java:4: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/TextTagCodecTest.java:5: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/TextTagCodecTest.java:6: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/ValidateSamFileTest.java:37: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/ValidateSamFileTest.java:38: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/ValidateSamFileTest.java:39: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/BAMRemoteFileTest.java:29: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/BAMRemoteFileTest.java:39: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SAMIntegerTagTest.java:31: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SAMIntegerTagTest.java:32: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SAMIntegerTagTest.java:33: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SAMIntegerTagTest.java:34: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SamStreamsTest.java:31: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/SamStreamsTest.java:32: testng ==> testing
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data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/cram/CRAIEntryTest.java:8: testng ==> testing
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data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/cram/build/CompressionHeaderFactoryTest.java:31: ACi ==> acpi
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data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/cram/build/CompressionHeaderFactoryTest.java:74: ACi ==> acpi
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data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/cram/structure/SliceBlockReadStreamTest.java:6: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/cram/structure/SliceBlockWriteStreamTest.java:5: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/cram/structure/SliceBlockWriteStreamTest.java:6: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/cram/structure/SliceBlocksTest.java:9: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/cram/structure/SliceBlocksTest.java:10: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/cram/structure/SliceTests.java:15: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/cram/structure/SliceTests.java:16: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/cram/structure/SliceTests.java:17: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/cram/structure/StructureTestUtils.java:5: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/cram/structure/SubstitutionMatrixTest.java:5: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/cram/structure/SubstitutionMatrixTest.java:6: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/cram/structure/SubstitutionMatrixTest.java:7: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/cram/structure/CRAMRecordTestHelper.java:6: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/cram/structure/block/BlockTest.java:11: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/cram/structure/block/BlockTest.java:12: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/cram/structure/block/BlockTest.java:13: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/cram/structure/block/CRAMRecordReadFeaturesTest.java:7: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/cram/structure/block/CRAMRecordReadFeaturesTest.java:8: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/cram/structure/block/CRAMRecordReadFeaturesTest.java:9: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/fastq/FastqEncoderTest.java:30: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/fastq/FastqEncoderTest.java:31: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/fastq/FastqRecordTest.java:6: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/fastq/FastqRecordTest.java:7: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/filter/FailsVendorReadQualityFilterTest.java:29: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/filter/FailsVendorReadQualityFilterTest.java:30: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/filter/FailsVendorReadQualityFilterTest.java:31: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/filter/InsertSizeFilterTest.java:6: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/filter/InsertSizeFilterTest.java:7: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/filter/InsertSizeFilterTest.java:8: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/filter/InsertSizeFilterTest.java:9: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/filter/IntervalFilterTest.java:10: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/filter/IntervalFilterTest.java:11: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/filter/IntervalFilterTest.java:12: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/filter/JavascriptSamRecordFilterTest.java:32: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/filter/JavascriptSamRecordFilterTest.java:33: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/filter/JavascriptSamRecordFilterTest.java:34: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/filter/MappingQualityFilterTest.java:6: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/filter/MappingQualityFilterTest.java:7: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/filter/MappingQualityFilterTest.java:8: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/filter/MappingQualityFilterTest.java:9: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/filter/OverclippedReadFilterTest.java:30: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/filter/OverclippedReadFilterTest.java:31: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/filter/OverclippedReadFilterTest.java:32: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/filter/OverclippedReadFilterTest.java:33: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/filter/ReadNameFilterTest.java:6: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/filter/ReadNameFilterTest.java:7: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/filter/ReadNameFilterTest.java:8: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/filter/SecondaryAlignmentFilterTest.java:5: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/filter/SecondaryAlignmentFilterTest.java:6: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/filter/SecondaryOrSupplementaryFilterTest.java:5: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/filter/SecondaryOrSupplementaryFilterTest.java:6: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/filter/SecondaryOrSupplementaryFilterTest.java:8: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/filter/SolexaNoiseFilterTest.java:29: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/filter/SolexaNoiseFilterTest.java:30: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/filter/SolexaNoiseFilterTest.java:31: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/filter/TagFilterTest.java:31: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/filter/TagFilterTest.java:32: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/filter/TagFilterTest.java:33: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/filter/IntervalKeepPairFilterTest.java:7: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/filter/IntervalKeepPairFilterTest.java:8: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/filter/IntervalKeepPairFilterTest.java:9: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/filter/IntervalKeepPairFilterTest.java:10: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/liftover/LiftOverTest.java:29: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/liftover/LiftOverTest.java:30: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/liftover/LiftOverTest.java:31: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/liftover/LiftOverTest.java:32: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/metrics/MetricBaseTest.java:4: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/metrics/MetricBaseTest.java:5: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/metrics/MetricBaseTest.java:6: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/metrics/MetricsFileTest.java:32: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/metrics/MetricsFileTest.java:33: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/metrics/StringHeaderTest.java:6: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/metrics/StringHeaderTest.java:7: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/metrics/VersionHeaderTest.java:5: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/metrics/VersionHeaderTest.java:6: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/reference/AbstractIndexedFastaSequenceFileTest.java:35: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/reference/AbstractIndexedFastaSequenceFileTest.java:36: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/reference/AbstractIndexedFastaSequenceFileTest.java:37: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/reference/FastaReferenceWriterTest.java:7: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/reference/FastaReferenceWriterTest.java:8: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/reference/FastaReferenceWriterTest.java:9: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/reference/FastaReferenceWriterTest.java:248: TestNG ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/reference/FastaReferenceWriterTest.java:361: discription ==> description
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/reference/FastaSequenceFileTest.java:30: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/reference/FastaSequenceFileTest.java:31: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/reference/FastaSequenceIndexCreatorTest.java:29: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/reference/FastaSequenceIndexCreatorTest.java:30: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/reference/FastaSequenceIndexCreatorTest.java:31: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/reference/FastaSequenceIndexTest.java:29: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/reference/FastaSequenceIndexTest.java:30: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/reference/FastaSequenceIndexTest.java:31: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/reference/ReferenceSequenceFileFactoryTests.java:4: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/reference/ReferenceSequenceFileFactoryTests.java:5: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/reference/ReferenceSequenceFileFactoryTests.java:6: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/reference/ReferenceSequenceFileWalkerTest.java:8: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/reference/ReferenceSequenceFileWalkerTest.java:9: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/reference/ReferenceSequenceFileWalkerTest.java:10: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/reference/ReferenceSequenceTests.java:29: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/reference/ReferenceSequenceTests.java:30: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/reference/ReferenceSequenceTests.java:31: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/reference/SamLocusAndReferenceIteratorTest.java:7: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/reference/SamLocusAndReferenceIteratorTest.java:8: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/seekablestream/ByteArraySeekableStreamTest.java:27: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/seekablestream/ByteArraySeekableStreamTest.java:28: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/seekablestream/ByteArraySeekableStreamTest.java:29: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/seekablestream/SeekableFileStreamTest.java:28: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/seekablestream/SeekableFileStreamTest.java:29: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/seekablestream/SeekableMemoryStreamTest.java:28: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/seekablestream/SeekableMemoryStreamTest.java:29: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/seekablestream/SeekablePathStreamTest.java:31: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/seekablestream/SeekablePathStreamTest.java:32: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/seekablestream/SeekableStreamFactoryTest.java:6: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/seekablestream/SeekableStreamFactoryTest.java:7: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/seekablestream/SeekableStreamFactoryTest.java:8: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/seekablestream/SeekableStreamTest.java:28: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/seekablestream/SeekableStreamTest.java:29: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/seekablestream/SeekableBufferedStreamTest.java:28: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/seekablestream/SeekableBufferedStreamTest.java:29: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/seekablestream/SeekableBufferedStreamTest.java:36: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/seekablestream/SeekableFTPStreamTest.java:27: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/seekablestream/SeekableFTPStreamTest.java:28: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/seekablestream/SeekableFTPStreamTest.java:29: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/seekablestream/SeekableFTPStreamTest.java:30: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/seekablestream/SeekableStreamGZIPinputStreamIntegrationTest.java:40: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/seekablestream/SeekableStreamGZIPinputStreamIntegrationTest.java:41: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/seekablestream/SeekableStreamGZIPinputStreamIntegrationTest.java:42: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/sra/AbstractSRATest.java:6: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/sra/AbstractSRATest.java:7: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/sra/AbstractSRATest.java:8: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/sra/AbstractSRATest.java:9: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/sra/AbstractSRATest.java:10: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/sra/SRAAccessionTest.java:3: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/sra/SRAAccessionTest.java:4: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/sra/SRAAccessionTest.java:5: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/sra/SRALazyRecordTest.java:7: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/sra/SRALazyRecordTest.java:8: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/sra/SRALazyRecordTest.java:9: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/sra/SRAQueryTest.java:8: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/sra/SRAQueryTest.java:9: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/sra/SRAReferenceTest.java:5: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/sra/SRAReferenceTest.java:6: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/sra/SRAReferenceTest.java:7: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/sra/SRAIndexTest.java:34: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/sra/SRAIndexTest.java:35: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/sra/SRAIndexTest.java:36: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/sra/SRATest.java:43: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/sra/SRATest.java:44: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/sra/SRATest.java:45: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/util/AbstractLocusInfoTest.java:31: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/util/AbstractLocusInfoTest.java:32: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/util/AbstractLocusInfoTest.java:34: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/util/AbstractRecordAndOffsetTest.java:29: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/util/AbstractRecordAndOffsetTest.java:30: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/util/AbstractRecordAndOffsetTest.java:32: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/util/AsyncBlockCompressedInputStreamTest.java:27: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/util/AsyncBlockCompressedInputStreamTest.java:28: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/util/AsyncBufferedIteratorTest.java:27: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/util/AsyncBufferedIteratorTest.java:28: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/util/AsyncWriterTest.java:27: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/util/AsyncWriterTest.java:28: testng ==> testing
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data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/util/BlockCompressedOutputStreamTest.java:29: testng ==> testing
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data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/util/DateParserTest.java:38: derivitive ==> derivative
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/util/DateParserTest.java:39: derivitive ==> derivative
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data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/util/IOUtilTest.java:63: wont ==> won't
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data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/util/IntervalUtilTest.java:6: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/util/IntervalUtilTest.java:7: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/util/IntervalUtilTest.java:8: testng ==> testing
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data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/util/GZIIndexTest.java:108: postion ==> position
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/samtools/util/BlockCompressedInputStreamTest.java:8: testng ==> testing
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data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/TestUtils.java:22: testng ==> testing
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data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/TribbleIndexedFeatureReaderTest.java:11: testng ==> testing
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data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/TribbleIndexedFeatureReaderTest.java:13: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/TribbleTest.java:5: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/TribbleTest.java:6: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/AbstractFeatureReaderTest.java:15: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/AbstractFeatureReaderTest.java:16: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/AbstractFeatureReaderTest.java:17: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/AbstractFeatureReaderTest.java:27: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/IntervalList/IntervalListCodecTest.java:38: testng ==> testing
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data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/IntervalList/IntervalListCodecTest.java:52: thi ==> the, this
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/IntervalList/IntervalListCodecTest.java:53: thi ==> the, this
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/IntervalList/IntervalListCodecTest.java:54: thi ==> the, this
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/IntervalList/IntervalListCodecTest.java:55: thi ==> the, this
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/IntervalList/IntervalListCodecTest.java:101: dictonary ==> dictionary
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/annotation/StrandTest.java:4: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/annotation/StrandTest.java:5: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/annotation/StrandTest.java:6: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/bed/BEDCodecTest.java:43: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/bed/BEDCodecTest.java:44: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/bed/BEDCodecTest.java:45: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/gff/Gff3CodecTest.java:10: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/gff/Gff3CodecTest.java:11: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/gff/Gff3CodecTest.java:12: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/gff/Gff3FeatureTest.java:8: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/gff/Gff3FeatureTest.java:9: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/gff/Gff3FeatureTest.java:10: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/gff/Gff3WriterTest.java:10: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/gff/Gff3WriterTest.java:11: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/gff/Gff3WriterTest.java:12: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/gff/Gff3WriterTest.java:13: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/index/IndexFactoryTest.java:47: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/index/IndexFactoryTest.java:48: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/index/IndexFactoryTest.java:49: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/index/IndexTest.java:18: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/index/IndexTest.java:19: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/index/IndexTest.java:20: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/index/interval/IntervalTreeTest.java:30: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/index/interval/IntervalTreeTest.java:31: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/index/interval/IntervalTreeTest.java:32: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/index/linear/LinearIndexTest.java:31: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/index/linear/LinearIndexTest.java:32: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/index/linear/LinearIndexTest.java:33: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/index/linear/LinearIndexTest.java:113: setTS ==> sets
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/index/tabix/TabixIndexTest.java:45: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/index/tabix/TabixIndexTest.java:46: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/index/tabix/TabixIndexTest.java:47: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/index/tabix/TbiEqualityChecker.java:33: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/readers/AsciiLineReaderTest.java:6: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/readers/AsciiLineReaderTest.java:7: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/readers/AsciiLineReaderTest.java:8: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/readers/AsciiLineReaderTest.java:14: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/readers/AsciiLineReaderTest.java:15: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/readers/BlockCompressedAsciiLineReaderTest.java:7: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/readers/BlockCompressedAsciiLineReaderTest.java:8: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/readers/LongLineBufferedReaderTest.java:5: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/readers/LongLineBufferedReaderTest.java:6: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/readers/PositionalBufferedStreamTest.java:5: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/readers/PositionalBufferedStreamTest.java:6: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/readers/PositionalBufferedStreamTest.java:7: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/readers/PositionalBufferedStreamTest.java:8: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/readers/PositionalBufferedStreamTest.java:9: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/readers/ReaderTest.java:5: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/readers/ReaderTest.java:6: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/readers/ReaderTest.java:7: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/readers/ReaderTest.java:8: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/readers/SynchronousLineReaderUnitTest.java:5: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/readers/SynchronousLineReaderUnitTest.java:6: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/readers/TabixReaderTest.java:7: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/readers/TabixReaderTest.java:8: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/readers/TabixReaderTest.java:9: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/readers/TabixReaderTest.java:10: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/util/ParsingUtilsTest.java:8: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/util/ParsingUtilsTest.java:9: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/util/ftp/FTPUtilsTest.java:5: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/util/ftp/FTPUtilsTest.java:9: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/util/ftp/FTPUtilsTest.java:10: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/util/ftp/FTPClientTest.java:6: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/util/ftp/FTPClientTest.java:7: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/util/ftp/FTPClientTest.java:8: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/util/ftp/FTPClientTest.java:9: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/util/popgen/HardyWeinbergCalculationTest.java:4: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/util/popgen/HardyWeinbergCalculationTest.java:5: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/tribble/util/popgen/HardyWeinbergCalculationTest.java:6: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/utils/ClassFinderTest.java:4: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/utils/ClassFinderTest.java:5: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/utils/TestNGUtils.java:4: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/utils/TestNGUtils.java:5: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/utils/TestNGUtils.java:13: TestNG ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/utils/TestNGUtilsTest.java:4: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/utils/TestNGUtilsTest.java:5: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/utils/TestNGUtilsTest.java:6: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/utils/SamtoolsTestUtilsTest.java:10: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/utils/SamtoolsTestUtilsTest.java:11: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/utils/SamtoolsTestUtilsTest.java:12: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/VariantBaseTest.java:38: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/VariantBaseTest.java:92: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/VariantBaseTest.java:260: comparision ==> comparison
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/PrintVariantsExampleTest.java:33: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/PrintVariantsExampleTest.java:34: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/bcf2/BCF2EncoderDecoderUnitTest.java:31: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/bcf2/BCF2EncoderDecoderUnitTest.java:32: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/bcf2/BCF2EncoderDecoderUnitTest.java:33: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/bcf2/BCF2EncoderDecoderUnitTest.java:34: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/bcf2/BCF2UtilsUnitTest.java:40: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/bcf2/BCF2UtilsUnitTest.java:41: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/bcf2/BCF2UtilsUnitTest.java:42: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/bcf2/BCF2UtilsUnitTest.java:97: TestNG ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/bcf2/BCF2VersionTest.java:4: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/bcf2/BCF2VersionTest.java:5: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/bcf2/BCF2VersionTest.java:6: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/bcf2/BCF2WriterUnitTest.java:42: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/bcf2/BCF2WriterUnitTest.java:43: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/bcf2/BCF2WriterUnitTest.java:44: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/bcf2/BCFCodecTest.java:8: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/bcf2/BCFCodecTest.java:9: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/utils/SAMSequenceDictionaryExtractorTest.java:29: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/utils/SAMSequenceDictionaryExtractorTest.java:30: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/utils/SAMSequenceDictionaryExtractorTest.java:31: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/utils/VCFHeaderReaderTest.java:7: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/utils/VCFHeaderReaderTest.java:8: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/utils/VCFHeaderReaderTest.java:9: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/variantcontext/AlleleUnitTest.java:33: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/variantcontext/AlleleUnitTest.java:34: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/variantcontext/AlleleUnitTest.java:35: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/variantcontext/AlleleUnitTest.java:36: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/variantcontext/GenotypeBuilderTest.java:29: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/variantcontext/GenotypeBuilderTest.java:30: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/variantcontext/GenotypeLikelihoodsUnitTest.java:35: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/variantcontext/GenotypeLikelihoodsUnitTest.java:36: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/variantcontext/GenotypeLikelihoodsUnitTest.java:37: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/variantcontext/GenotypeLikelihoodsUnitTest.java:38: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/variantcontext/GenotypeUnitTest.java:34: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/variantcontext/GenotypeUnitTest.java:35: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/variantcontext/GenotypeUnitTest.java:36: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/variantcontext/GenotypesContextUnitTest.java:35: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/variantcontext/GenotypesContextUnitTest.java:36: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/variantcontext/GenotypesContextUnitTest.java:37: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/variantcontext/GenotypesContextUnitTest.java:38: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/variantcontext/GenotypesContextUnitTest.java:294: setted ==> set
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/variantcontext/GenotypesContextUnitTest.java:295: setted ==> set
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/variantcontext/VariantContextBuilderTest.java:4: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/variantcontext/VariantContextBuilderTest.java:5: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/variantcontext/VariantContextBuilderTest.java:6: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/variantcontext/VariantContextTestProvider.java:52: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/variantcontext/VariantContextTestProvider.java:161: testNG ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/variantcontext/VariantContextUnitTest.java:44: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/variantcontext/VariantContextUnitTest.java:45: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/variantcontext/VariantContextUnitTest.java:46: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/variantcontext/VariantContextUnitTest.java:47: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/variantcontext/VariantContextUnitTest.java:48: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/variantcontext/VariantContextUnitTest.java:1272: frequncy ==> frequency
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/variantcontext/VariantJEXLContextUnitTest.java:33: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/variantcontext/VariantJEXLContextUnitTest.java:34: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/variantcontext/VariantJEXLContextUnitTest.java:35: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/variantcontext/filter/CompoundFilterTest.java:7: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/variantcontext/filter/CompoundFilterTest.java:8: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/variantcontext/filter/CompoundFilterTest.java:9: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/variantcontext/filter/FilteringVariantContextIteratorTest.java:30: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/variantcontext/filter/FilteringVariantContextIteratorTest.java:31: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/variantcontext/filter/FilteringVariantContextIteratorTest.java:32: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/variantcontext/filter/GenotypeQualityFilterTest.java:31: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/variantcontext/filter/GenotypeQualityFilterTest.java:32: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/variantcontext/filter/GenotypeQualityFilterTest.java:33: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/variantcontext/filter/HeterozygosityFilterTest.java:31: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/variantcontext/filter/HeterozygosityFilterTest.java:32: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/variantcontext/filter/HeterozygosityFilterTest.java:33: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/variantcontext/filter/JavascriptVariantFilterTest.java:29: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/variantcontext/filter/JavascriptVariantFilterTest.java:30: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/variantcontext/filter/JavascriptVariantFilterTest.java:31: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/variantcontext/filter/PassingVariantFilterTest.java:7: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/variantcontext/filter/PassingVariantFilterTest.java:8: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/variantcontext/filter/PassingVariantFilterTest.java:9: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/variantcontext/filter/SnpFilterTest.java:7: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/variantcontext/filter/SnpFilterTest.java:8: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/variantcontext/filter/SnpFilterTest.java:9: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/variantcontext/writer/AsyncVariantContextWriterUnitTest.java:42: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/variantcontext/writer/AsyncVariantContextWriterUnitTest.java:43: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/variantcontext/writer/AsyncVariantContextWriterUnitTest.java:44: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/variantcontext/writer/TabixOnTheFlyIndexCreationTest.java:35: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/variantcontext/writer/VCFWriterUnitTest.java:64: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/variantcontext/writer/VCFWriterUnitTest.java:65: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/variantcontext/writer/VCFWriterUnitTest.java:66: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/variantcontext/writer/VCFWriterUnitTest.java:67: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/variantcontext/writer/VariantContextWriterBuilderUnitTest.java:48: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/variantcontext/writer/VariantContextWriterBuilderUnitTest.java:49: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/variantcontext/writer/VariantContextWriterBuilderUnitTest.java:50: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/variantcontext/writer/VariantContextWriterBuilderUnitTest.java:51: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/variantcontext/writer/VariantContextWritersUnitTest.java:40: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/variantcontext/writer/VariantContextWritersUnitTest.java:41: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/variantcontext/writer/VariantContextWritersUnitTest.java:42: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/vcf/AbstractVCFCodecTest.java:8: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/vcf/AbstractVCFCodecTest.java:9: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/vcf/AbstractVCFCodecTest.java:10: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/vcf/AbstractVCFCodecTest.java:45: nonexistant ==> nonexistent
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/vcf/IndexFactoryUnitTest.java:40: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/vcf/IndexFactoryUnitTest.java:41: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/vcf/VCFCodec42FeaturesTest.java:4: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/vcf/VCFCodec42FeaturesTest.java:5: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/vcf/VCFCodec43FeaturesTest.java:13: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/vcf/VCFCodec43FeaturesTest.java:14: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/vcf/VCFCodec43FeaturesTest.java:15: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/vcf/VCFCompoundHeaderLineUnitTest.java:29: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/vcf/VCFCompoundHeaderLineUnitTest.java:30: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/vcf/VCFEncoderTest.java:9: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/vcf/VCFEncoderTest.java:10: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/vcf/VCFEncoderTest.java:11: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/vcf/VCFFileReaderTest.java:10: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/vcf/VCFFileReaderTest.java:11: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/vcf/VCFFileReaderTest.java:12: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/vcf/VCFHeaderLineTranslatorUnitTest.java:5: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/vcf/VCFHeaderLineTranslatorUnitTest.java:6: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/vcf/VCFHeaderLineTranslatorUnitTest.java:7: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/vcf/VCFHeaderLineUnitTest.java:4: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/vcf/VCFHeaderLineUnitTest.java:9: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/vcf/VCFHeaderLineUnitTest.java:10: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/vcf/VCFHeaderUnitTest.java:44: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/vcf/VCFHeaderUnitTest.java:45: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/vcf/VCFHeaderUnitTest.java:46: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/vcf/VCFHeaderUnitTest.java:47: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/vcf/VCFHeaderUnitTest.java:48: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/vcf/VCFHeaderUnitTest.java:344: readd ==> re-add, read
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/vcf/VCFHeaderUnitTest.java:364: readd ==> re-add, read
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/vcf/VCFHeaderVersionTest.java:4: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/vcf/VCFHeaderVersionTest.java:5: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/vcf/VCFHeaderVersionTest.java:6: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/vcf/VCFIteratorTest.java:37: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/vcf/VCFIteratorTest.java:38: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/vcf/VCFIteratorTest.java:39: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/vcf/VCFMergerTest.java:46: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/vcf/VCFMergerTest.java:47: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/vcf/VCFStandardHeaderLinesUnitTest.java:29: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/vcf/VCFStandardHeaderLinesUnitTest.java:30: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/vcf/VCFStandardHeaderLinesUnitTest.java:31: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/vcf/VCFTextTransformerTest.java:5: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/vcf/VCFTextTransformerTest.java:6: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/vcf/VCFTextTransformerTest.java:7: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/vcf/VCFUtilsTest.java:4: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/vcf/VCFUtilsTest.java:5: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/java/htsjdk/variant/vcf/VCFUtilsTest.java:6: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/resources/testng.xml:1: testng ==> testing
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/c1#unknown.sam:2: permuations ==> permutations
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#1.sam:2: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#1000.sam:6: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#1000.sam:15: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#1000.sam:26: DAA ==> DATA
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#1000.sam:38: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#1000.sam:51: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#1000.sam:72: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#1000.sam:73: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#1000.sam:79: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#1000.sam:83: DAA ==> DATA
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#1000.sam:88: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#1000.sam:95: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#1000.sam:97: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#1000.sam:100: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#1000.sam:106: DAA ==> DATA
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#1000.sam:160: DAA ==> DATA
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#1000.sam:170: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#1000.sam:240: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#1000.sam:247: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#1000.sam:248: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#1000.sam:248: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#1000.sam:250: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#1000.sam:281: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#1000.sam:294: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#1000.sam:300: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#1000.sam:312: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#1000.sam:322: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#1000.sam:349: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#1000.sam:356: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#1000.sam:361: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#1000.sam:381: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#1000.sam:383: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#1000.sam:404: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#1000.sam:418: DAA ==> DATA
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#1000.sam:419: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#1000.sam:431: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#1000.sam:440: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#1000.sam:449: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#1000.sam:457: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#1000.sam:469: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#1000.sam:490: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#1000.sam:539: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#1000.sam:562: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#1000.sam:562: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#1000.sam:581: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#1000.sam:584: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#1000.sam:603: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#1000.sam:626: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#1000.sam:667: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#1000.sam:692: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#1000.sam:712: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#1000.sam:714: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#1000.sam:727: DAA ==> DATA
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#1000.sam:773: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#1000.sam:785: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#1000.sam:808: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#1000.sam:830: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#1000.sam:831: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#1000.sam:840: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#1000.sam:840: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#1000.sam:849: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#1000.sam:850: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#1000.sam:860: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#1000.sam:880: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#1000.sam:939: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#1000.sam:939: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#1000.sam:954: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#1000.sam:960: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#1000.sam:964: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#1000.sam:980: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#1000.sam:981: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#1000.sam:989: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#2.sam:2: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#5.sam:6: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#5.sam:7: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#5.sam:8: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#5.sam:9: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#5.sam:10: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#5.sam:11: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#5b.sam:6: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#5b.sam:7: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#5b.sam:8: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#5b.sam:9: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#5b.sam:10: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#large_seq.sam:3: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#tag_depadded.sam:4: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#tag_depadded.sam:5: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#tag_depadded.sam:6: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#tag_depadded.sam:7: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#tag_depadded.sam:8: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#tag_padded.sam:4: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#tag_padded.sam:5: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#tag_padded.sam:6: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#tag_padded.sam:7: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#tag_padded.sam:8: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#unmap.sam:1: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#unmap.sam:2: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#unmap.sam:3: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#unmap.sam:4: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#unmap.sam:5: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#unmap.sam:6: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#unmap1.sam:11: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#unmap2.sam:11: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#unmap2.sam:20: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/ce#unmap2.sam:21: BA ==> BY, BE
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/xx#large_aux.sam:2: ba ==> by, be
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/xx#large_aux.sam:2: fo ==> of, for
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/xx#large_aux.sam:3: ba ==> by, be
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/xx#large_aux.sam:3: fo ==> of, for
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/xx#large_aux.sam:3: Ba ==> By, be
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/cram/xx#large_aux.sam:3: Fo ==> Of, for
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/intervallist/IntervalListFromVCFTest.vcf:2: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/intervallist/IntervalListFromVCFTest.vcf:2: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/intervallist/IntervalListFromVCFTest.vcf:2: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/intervallist/IntervalListFromVCFTest.vcf:2: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/intervallist/IntervalListFromVCFTest.vcf:3: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/intervallist/IntervalListFromVCFTest.vcf:3: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/intervallist/IntervalListFromVCFTest.vcf:3: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/intervallist/IntervalListFromVCFTest.vcf:3: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/intervallist/IntervalListFromVCFTest.vcf:3: minimumN ==> minimum
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/intervallist/IntervalListFromVCFTest.vcf:5: Lod ==> Load
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/intervallist/IntervalListFromVCFTest.vcf:6: Lod ==> Load
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/intervallist/IntervalListFromVCFTest.vcf:7: Lod ==> Load
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/intervallist/IntervalListFromVCFTest.vcf:8: Lod ==> Load
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/intervallist/IntervalListFromVCFTest.vcf:9: Lod ==> Load
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/intervallist/IntervalListFromVCFTest.vcf:10: Lod ==> Load
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/intervallist/IntervalListFromVCFTest.vcf:43: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/intervallist/IntervalListFromVCFTest.vcf:43: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/intervallist/IntervalListFromVCFTest.vcf:43: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/intervallist/IntervalListFromVCFTest.vcf:43: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/intervallist/IntervalListFromVCFTest.vcf:44: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/intervallist/IntervalListFromVCFTest.vcf:44: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/intervallist/IntervalListFromVCFTest.vcf:44: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/intervallist/IntervalListFromVCFTest.vcf:44: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/intervallist/IntervalListFromVCFTestManual.vcf:2: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/intervallist/IntervalListFromVCFTestManual.vcf:2: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/intervallist/IntervalListFromVCFTestManual.vcf:2: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/intervallist/IntervalListFromVCFTestManual.vcf:2: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/intervallist/IntervalListFromVCFTestManual.vcf:3: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/intervallist/IntervalListFromVCFTestManual.vcf:3: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/intervallist/IntervalListFromVCFTestManual.vcf:3: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/intervallist/IntervalListFromVCFTestManual.vcf:3: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/intervallist/IntervalListFromVCFTestManual.vcf:3: minimumN ==> minimum
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/intervallist/IntervalListFromVCFTestManual.vcf:5: Lod ==> Load
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/intervallist/IntervalListFromVCFTestManual.vcf:6: Lod ==> Load
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/intervallist/IntervalListFromVCFTestManual.vcf:7: Lod ==> Load
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/intervallist/IntervalListFromVCFTestManual.vcf:8: Lod ==> Load
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/intervallist/IntervalListFromVCFTestManual.vcf:9: Lod ==> Load
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/intervallist/IntervalListFromVCFTestManual.vcf:10: Lod ==> Load
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/intervallist/IntervalListFromVCFTestManual.vcf:43: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/intervallist/IntervalListFromVCFTestManual.vcf:43: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/intervallist/IntervalListFromVCFTestManual.vcf:43: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/intervallist/IntervalListFromVCFTestManual.vcf:43: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/intervallist/IntervalListFromVCFTestManual.vcf:44: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/intervallist/IntervalListFromVCFTestManual.vcf:44: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/intervallist/IntervalListFromVCFTestManual.vcf:44: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/intervallist/IntervalListFromVCFTestManual.vcf:44: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/io/dictionary_english_short.dic:415: accidently ==> accidentally
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/io/dictionary_english_short.dic:892: caesarian ==> caesarean
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/io/dictionary_english_short.dic:1133: contiguities ==> continuities
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/io/dictionary_english_short.dic:1373: discontentment ==> discontent
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/io/dictionary_english_short.dic:2069: incase ==> in case
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/io/dictionary_english_short.dic:2896: pastural ==> pastoral
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/io/dictionary_english_short.dic:3988: theer ==> there
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/io/dictionary_english_short.dic:4187: uncorrect ==> incorrect
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/io/dictionary_english_short.dic:4542: yeld ==> yield
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/io/ipsum.txt:3: varius ==> various
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/io/ipsum.txt:5: varius ==> various
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/io/ipsum.txt:7: varius ==> various
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/io/slurptest.txt:3: wont ==> won't
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.dict:2: Sting ==> String
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.dict:3: Sting ==> String
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/reference/leading_insertion.sam:2: Sting ==> String
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/reference/leading_insertion.sam:3: Sting ==> String
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/reference/simpleSmallFile.sam:2: Sting ==> String
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/samtools/reference/simpleSmallFile.sam:3: Sting ==> String
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/tribble/large.txt:2: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/tribble/large.txt:2: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/tribble/large.txt:2: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/tribble/large.txt:2: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/tribble/large.txt:3: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/tribble/large.txt:3: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/tribble/large.txt:3: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/tribble/large.txt:3: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/tribble/large.txt:3: minimumN ==> minimum
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/tribble/large.txt:9: Lod ==> Load
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/tribble/large.txt:10: Lod ==> Load
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/tribble/large.txt:11: Lod ==> Load
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/tribble/large.txt:12: Lod ==> Load
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/tribble/large.txt:13: Lod ==> Load
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/tribble/large.txt:14: Lod ==> Load
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/tribble/large.txt:15: Lod ==> Load
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/tribble/large.txt:16: Lod ==> Load
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/tribble/large.txt:17: Lod ==> Load
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/tribble/large.txt:59: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/tribble/large.txt:59: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/tribble/large.txt:59: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/tribble/large.txt:59: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/tribble/large.txt:60: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/tribble/large.txt:60: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/tribble/large.txt:60: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/tribble/large.txt:60: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/tribble/large.txt:61: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/tribble/large.txt:61: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/tribble/large.txt:61: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/tribble/large.txt:61: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/tribble/large.txt:62: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/tribble/large.txt:62: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/tribble/large.txt:62: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/tribble/large.txt:62: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/tribble/tabix/4featuresHG38Header.vcf:12: LOD ==> LOAD
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/tribble/tabix/4featuresHG38Header.vcf:33: LOD ==> LOAD
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/tribble/tabix/4featuresHG38Header.vcf:38: LOD ==> LOAD
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/ILLUMINA.wex.broad_phase2_baseline.20111114.both.exome.genotypes.1000.vcf:2: Lod ==> Load
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/ILLUMINA.wex.broad_phase2_baseline.20111114.both.exome.genotypes.1000.vcf:3: Lod ==> Load
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/ILLUMINA.wex.broad_phase2_baseline.20111114.both.exome.genotypes.1000.vcf:4: Lod ==> Load
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/ILLUMINA.wex.broad_phase2_baseline.20111114.both.exome.genotypes.1000.vcf:5: Lod ==> Load
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/ILLUMINA.wex.broad_phase2_baseline.20111114.both.exome.genotypes.1000.vcf:6: Lod ==> Load
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/ILLUMINA.wex.broad_phase2_baseline.20111114.both.exome.genotypes.1000.vcf:7: Lod ==> Load
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/ILLUMINA.wex.broad_phase2_baseline.20111114.both.exome.genotypes.1000.vcf:8: Lod ==> Load
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/ILLUMINA.wex.broad_phase2_baseline.20111114.both.exome.genotypes.1000.vcf:9: Lod ==> Load
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/VcfThatLacksAnIndex but has a space.vcf:2: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/VcfThatLacksAnIndex but has a space.vcf:2: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/VcfThatLacksAnIndex but has a space.vcf:2: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/VcfThatLacksAnIndex but has a space.vcf:2: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/VcfThatLacksAnIndex but has a space.vcf:3: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/VcfThatLacksAnIndex but has a space.vcf:3: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/VcfThatLacksAnIndex but has a space.vcf:3: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/VcfThatLacksAnIndex but has a space.vcf:3: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/VcfThatLacksAnIndex but has a space.vcf:3: minimumN ==> minimum
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/VcfThatLacksAnIndex but has a space.vcf:5: Lod ==> Load
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/VcfThatLacksAnIndex but has a space.vcf:6: Lod ==> Load
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/VcfThatLacksAnIndex but has a space.vcf:7: Lod ==> Load
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/VcfThatLacksAnIndex but has a space.vcf:8: Lod ==> Load
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/VcfThatLacksAnIndex but has a space.vcf:9: Lod ==> Load
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/VcfThatLacksAnIndex but has a space.vcf:10: Lod ==> Load
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/VcfThatLacksAnIndex but has a space.vcf:43: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/VcfThatLacksAnIndex but has a space.vcf:43: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/VcfThatLacksAnIndex but has a space.vcf:43: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/VcfThatLacksAnIndex but has a space.vcf:43: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/VcfThatLacksAnIndex but has a space.vcf:44: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/VcfThatLacksAnIndex but has a space.vcf:44: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/VcfThatLacksAnIndex but has a space.vcf:44: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/VcfThatLacksAnIndex but has a space.vcf:44: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/VcfThatLacksAnIndex.vcf:2: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/VcfThatLacksAnIndex.vcf:2: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/VcfThatLacksAnIndex.vcf:2: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/VcfThatLacksAnIndex.vcf:2: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/VcfThatLacksAnIndex.vcf:3: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/VcfThatLacksAnIndex.vcf:3: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/VcfThatLacksAnIndex.vcf:3: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/VcfThatLacksAnIndex.vcf:3: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/VcfThatLacksAnIndex.vcf:3: minimumN ==> minimum
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/VcfThatLacksAnIndex.vcf:5: Lod ==> Load
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/VcfThatLacksAnIndex.vcf:6: Lod ==> Load
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/VcfThatLacksAnIndex.vcf:7: Lod ==> Load
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/VcfThatLacksAnIndex.vcf:8: Lod ==> Load
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/VcfThatLacksAnIndex.vcf:9: Lod ==> Load
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/VcfThatLacksAnIndex.vcf:10: Lod ==> Load
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/VcfThatLacksAnIndex.vcf:43: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/VcfThatLacksAnIndex.vcf:43: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/VcfThatLacksAnIndex.vcf:43: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/VcfThatLacksAnIndex.vcf:43: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/VcfThatLacksAnIndex.vcf:44: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/VcfThatLacksAnIndex.vcf:44: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/VcfThatLacksAnIndex.vcf:44: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/VcfThatLacksAnIndex.vcf:44: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/dbsnp_135.b37.1000.vcf:32: refernce ==> reference
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/dbsnp_135.b37.1000.vcf:58: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/dbsnp_135.b37.1000.vcf:58: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/dbsnp_135.b37.1000.vcf:58: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/diagnosis_targets_testfile.vcf:2: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/diagnosis_targets_testfile.vcf:2: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/diagnosis_targets_testfile.vcf:2: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/test1.vcf:2: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/test1.vcf:2: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/test1.vcf:2: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/test1.vcf:2: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/test1.vcf:3: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/test1.vcf:3: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/test1.vcf:3: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/test1.vcf:3: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/test1.vcf:3: minimumN ==> minimum
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/test1.vcf:5: Lod ==> Load
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/test1.vcf:6: Lod ==> Load
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/test1.vcf:7: Lod ==> Load
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/test1.vcf:8: Lod ==> Load
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/test1.vcf:9: Lod ==> Load
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/test1.vcf:10: Lod ==> Load
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/test1.vcf:43: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/test1.vcf:43: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/test1.vcf:43: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/test1.vcf:43: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/test1.vcf:44: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/test1.vcf:44: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/test1.vcf:44: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/test1.vcf:44: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/test2.vcf:2: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/test2.vcf:2: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/test2.vcf:2: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/test2.vcf:2: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/test2.vcf:3: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/test2.vcf:3: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/test2.vcf:3: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/test2.vcf:3: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/test2.vcf:3: minimumN ==> minimum
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/test2.vcf:5: Lod ==> Load
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/test2.vcf:6: Lod ==> Load
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/test2.vcf:7: Lod ==> Load
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/test2.vcf:8: Lod ==> Load
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/test2.vcf:9: Lod ==> Load
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/test2.vcf:10: Lod ==> Load
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/test2.vcf:43: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/test2.vcf:43: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/test2.vcf:43: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/test2.vcf:43: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/test2.vcf:44: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/test2.vcf:44: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/test2.vcf:44: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/test2.vcf:44: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/test_withGLandPL.vcf:2: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/test_withGLandPL.vcf:2: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/test_withGLandPL.vcf:2: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/test_withGLandPL.vcf:2: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/test_withGLandPL.vcf:3: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/test_withGLandPL.vcf:3: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/test_withGLandPL.vcf:3: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/test_withGLandPL.vcf:3: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/test_withGLandPL.vcf:3: minimumN ==> minimum
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/test_withGLandPL.vcf:5: Lod ==> Load
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/test_withGLandPL.vcf:6: Lod ==> Load
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/test_withGLandPL.vcf:7: Lod ==> Load
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/test_withGLandPL.vcf:8: Lod ==> Load
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/test_withGLandPL.vcf:9: Lod ==> Load
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/test_withGLandPL.vcf:10: Lod ==> Load
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/test_withGLandPL.vcf:43: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/test_withGLandPL.vcf:43: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/test_withGLandPL.vcf:43: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/test_withGLandPL.vcf:43: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/test_withGLandPL.vcf:44: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/test_withGLandPL.vcf:44: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/test_withGLandPL.vcf:44: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/test_withGLandPL.vcf:44: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/vcf42HeaderLines.vcf:9: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/vcf42HeaderLines.vcf:9: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/vcf42HeaderLines.vcf:9: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/vcf42HeaderLines.vcf:9: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/vcf42HeaderLines.vcf:9: minimumN ==> minimum
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/utils/SamSequenceDictionaryExtractor/Homo_sapiens_assembly18.trimmed.dict:2: Sting ==> String
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/utils/SamSequenceDictionaryExtractor/Homo_sapiens_assembly18.trimmed.dict:3: Sting ==> String
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/utils/SamSequenceDictionaryExtractor/test1.vcf:2: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/utils/SamSequenceDictionaryExtractor/test1.vcf:2: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/utils/SamSequenceDictionaryExtractor/test1.vcf:2: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/utils/SamSequenceDictionaryExtractor/test1.vcf:2: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/utils/SamSequenceDictionaryExtractor/test1.vcf:3: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/utils/SamSequenceDictionaryExtractor/test1.vcf:3: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/utils/SamSequenceDictionaryExtractor/test1.vcf:3: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/utils/SamSequenceDictionaryExtractor/test1.vcf:3: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/utils/SamSequenceDictionaryExtractor/test1.vcf:3: minimumN ==> minimum
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/utils/SamSequenceDictionaryExtractor/test1.vcf:5: Lod ==> Load
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/utils/SamSequenceDictionaryExtractor/test1.vcf:6: Lod ==> Load
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/utils/SamSequenceDictionaryExtractor/test1.vcf:7: Lod ==> Load
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/utils/SamSequenceDictionaryExtractor/test1.vcf:8: Lod ==> Load
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/utils/SamSequenceDictionaryExtractor/test1.vcf:9: Lod ==> Load
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/utils/SamSequenceDictionaryExtractor/test1.vcf:10: Lod ==> Load
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/utils/SamSequenceDictionaryExtractor/test1.vcf:43: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/utils/SamSequenceDictionaryExtractor/test1.vcf:43: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/utils/SamSequenceDictionaryExtractor/test1.vcf:43: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/utils/SamSequenceDictionaryExtractor/test1.vcf:43: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/utils/SamSequenceDictionaryExtractor/test1.vcf:44: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/utils/SamSequenceDictionaryExtractor/test1.vcf:44: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/utils/SamSequenceDictionaryExtractor/test1.vcf:44: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/utils/SamSequenceDictionaryExtractor/test1.vcf:44: sting ==> string
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/utils/SamSequenceDictionaryExtractor/test2_comp.interval_list:1: Sting ==> String
data/htsjdk-2.23.0+dfsg/src/test/resources/htsjdk/variant/utils/SamSequenceDictionaryExtractor/test2_comp.interval_list:2: Sting ==> String
data/htsjdk-2.23.0+dfsg/src/test/scala/htsjdk/samtools/fastq/FastqReaderWriterTest.scala:39: shouldBe ==> should, should be
data/htsjdk-2.23.0+dfsg/src/test/scala/htsjdk/samtools/fastq/FastqReaderWriterTest.scala:40: shouldBe ==> should, should be
data/htsjdk-2.23.0+dfsg/src/test/scala/htsjdk/samtools/fastq/FastqReaderWriterTest.scala:41: shouldBe ==> should, should be
data/htsjdk-2.23.0+dfsg/src/test/scala/htsjdk/samtools/fastq/FastqReaderWriterTest.scala:42: shouldBe ==> should, should be
data/htsjdk-2.23.0+dfsg/src/test/scala/htsjdk/samtools/fastq/FastqReaderWriterTest.scala:43: shouldBe ==> should, should be
data/htsjdk-2.23.0+dfsg/src/test/scala/htsjdk/samtools/fastq/FastqReaderWriterTest.scala:44: shouldBe ==> should, should be
data/htsjdk-2.23.0+dfsg/src/test/scala/htsjdk/samtools/fastq/FastqReaderWriterTest.scala:94: shouldBe ==> should, should be
data/htsjdk-2.23.0+dfsg/src/test/scala/htsjdk/samtools/fastq/FastqReaderWriterTest.scala:98: shouldBe ==> should, should be
data/htsjdk-2.23.0+dfsg/src/test/scala/htsjdk/samtools/fastq/FastqReaderWriterTest.scala:98: shouldnt ==> shouldn't
data/htsjdk-2.23.0+dfsg/src/test/scala/htsjdk/samtools/fastq/FastqReaderWriterTest.scala:105: shouldBe ==> should, should be
data/htsjdk-2.23.0+dfsg/src/test/scala/htsjdk/samtools/fastq/FastqReaderWriterTest.scala:133: shouldBe ==> should, should be
data/htsjdk-2.23.0+dfsg/src/test/scala/htsjdk/samtools/fastq/FastqReaderWriterTest.scala:148: shouldBe ==> should, should be
data/htsjdk-2.23.0+dfsg/src/test/scala/htsjdk/samtools/fastq/FastqReaderWriterTest.scala:162: shouldBe ==> should, should be
data/htsjdk-2.23.0+dfsg/src/test/scala/htsjdk/samtools/fastq/FastqReaderWriterTest.scala:176: shouldBe ==> should, should be
data/htsjdk-2.23.0+dfsg/src/test/scala/htsjdk/samtools/fastq/FastqReaderWriterTest.scala:177: shouldBe ==> should, should be
data/htsjdk-2.23.0+dfsg/src/test/scala/htsjdk/samtools/util/StringUtilTest.scala:33: shouldBe ==> should, should be
data/htsjdk-2.23.0+dfsg/src/test/scala/htsjdk/samtools/util/StringUtilTest.scala:41: shouldBe ==> should, should be
data/htsjdk-2.23.0+dfsg/src/test/scala/htsjdk/samtools/util/StringUtilTest.scala:46: shouldBe ==> should, should be
data/htsjdk-2.23.0+dfsg/src/test/scala/htsjdk/samtools/util/StringUtilTest.scala:47: shouldBe ==> should, should be
data/htsjdk-2.23.0+dfsg/src/test/scala/htsjdk/samtools/util/StringUtilTest.scala:51: shouldBe ==> should, should be
data/htsjdk-2.23.0+dfsg/src/test/scala/htsjdk/samtools/util/StringUtilTest.scala:56: shouldBe ==> should, should be
data/htsjdk-2.23.0+dfsg/src/test/scala/htsjdk/samtools/util/StringUtilTest.scala:61: shouldBe ==> should, should be
data/htsjdk-2.23.0+dfsg/src/test/scala/htsjdk/samtools/util/StringUtilTest.scala:65: shouldBe ==> should, should be
data/htsjdk-2.23.0+dfsg/src/test/scala/htsjdk/samtools/util/StringUtilTest.scala:69: shouldBe ==> should, should be
data/htsjdk-2.23.0+dfsg/src/test/scala/htsjdk/samtools/util/StringUtilTest.scala:70: shouldBe ==> should, should be
data/htsjdk-2.23.0+dfsg/src/test/scala/htsjdk/samtools/util/StringUtilTest.scala:75: shouldBe ==> should, should be
data/htsjdk-2.23.0+dfsg/src/test/scala/htsjdk/samtools/util/StringUtilTest.scala:80: shouldBe ==> should, should be
data/htsjdk-2.23.0+dfsg/src/test/scala/htsjdk/samtools/util/StringUtilTest.scala:81: shouldBe ==> should, should be
data/htsjdk-2.23.0+dfsg/src/test/scala/htsjdk/samtools/util/StringUtilTest.scala:85: shouldBe ==> should, should be
data/htsjdk-2.23.0+dfsg/src/test/scala/htsjdk/samtools/util/StringUtilTest.scala:89: shouldBe ==> should, should be
data/htsjdk-2.23.0+dfsg/src/test/scala/htsjdk/samtools/util/StringUtilTest.scala:96: shouldBe ==> should, should be
data/htsjdk-2.23.0+dfsg/src/test/scala/htsjdk/samtools/util/StringUtilTest.scala:100: shouldBe ==> should, should be
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