data/htslib-1.11/bgzf.c:327: non-useful ==> useless
data/htslib-1.11/bgzf.c:451: fpr ==> for, far, fps
data/htslib-1.11/bgzf.c:452: fpr ==> for, far, fps
data/htslib-1.11/bgzf.c:453: fpr ==> for, far, fps
data/htslib-1.11/bgzf.c:454: fpr ==> for, far, fps
data/htslib-1.11/bgzf.c:455: fpr ==> for, far, fps
data/htslib-1.11/bgzf.c:474: fpr ==> for, far, fps
data/htslib-1.11/bgzf.c:475: fpr ==> for, far, fps
data/htslib-1.11/bgzf.c:476: fpr ==> for, far, fps
data/htslib-1.11/bgzf.c:477: fpr ==> for, far, fps
data/htslib-1.11/bgzf.c:478: fpr ==> for, far, fps
data/htslib-1.11/faidx.5:50: TE ==> THE, BE, WE
data/htslib-1.11/faidx.5:177: TE ==> THE, BE, WE
data/htslib-1.11/faidx.5:187: TE ==> THE, BE, WE
data/htslib-1.11/faidx.5:229: TE ==> THE, BE, WE
data/htslib-1.11/knetfile.c:89: addapted ==> adapted
data/htslib-1.11/knetfile.c:154: modfied ==> modified
data/htslib-1.11/regidx.c:79: alloced ==> allocated
data/htslib-1.11/sam.5:45: TE ==> THE, BE, WE
data/htslib-1.11/sam.5:62: TE ==> THE, BE, WE
data/htslib-1.11/synced_bcf_reader.c:1131: als ==> also
data/htslib-1.11/synced_bcf_reader.c:1131: als ==> also
data/htslib-1.11/synced_bcf_reader.c:1295: als ==> also
data/htslib-1.11/synced_bcf_reader.c:1303: als ==> also
data/htslib-1.11/synced_bcf_reader.c:1305: als ==> also
data/htslib-1.11/synced_bcf_reader.c:1305: als ==> also
data/htslib-1.11/synced_bcf_reader.c:1310: als ==> also
data/htslib-1.11/synced_bcf_reader.c:1312: als ==> also
data/htslib-1.11/synced_bcf_reader.c:1312: als ==> also
data/htslib-1.11/vcf.5:44: TE ==> THE, BE, WE
data/htslib-1.11/vcf.c:1202: als ==> also
data/htslib-1.11/vcf.c:1210: als ==> also
data/htslib-1.11/vcf.c:2489: te ==> the, be, we
data/htslib-1.11/vcf.c:2490: te ==> the, be, we
data/htslib-1.11/vcf.c:2491: te ==> the, be, we
data/htslib-1.11/vcf.c:2501: te ==> the, be, we
data/htslib-1.11/vcf.c:2514: te ==> the, be, we
data/htslib-1.11/vcf.c:2515: te ==> the, be, we
data/htslib-1.11/vcf.c:2516: te ==> the, be, we
data/htslib-1.11/vcf.c:2522: te ==> the, be, we
data/htslib-1.11/vcf.c:2751: te ==> the, be, we
data/htslib-1.11/vcf.c:2773: te ==> the, be, we
data/htslib-1.11/vcf.c:2774: te ==> the, be, we
data/htslib-1.11/vcf.c:2787: te ==> the, be, we
data/htslib-1.11/vcf.c:2794: te ==> the, be, we
data/htslib-1.11/vcf.c:2795: te ==> the, be, we
data/htslib-1.11/vcf.c:2806: te ==> the, be, we
data/htslib-1.11/vcf.c:2842: te ==> the, be, we
data/htslib-1.11/vcf.c:2843: te ==> the, be, we
data/htslib-1.11/vcf.c:2845: te ==> the, be, we
data/htslib-1.11/vcf.c:3032: als ==> also
data/htslib-1.11/vcf.c:3034: als ==> also
data/htslib-1.11/vcf.c:3043: als ==> also
data/htslib-1.11/vcf.c:3047: als ==> also
data/htslib-1.11/vcf.c:4407: als ==> also
data/htslib-1.11/vcf.c:4407: als ==> also
data/htslib-1.11/vcf.c:4411: als ==> also
data/htslib-1.11/vcf.c:4412: als ==> also
data/htslib-1.11/vcf.c:4412: als ==> also
data/htslib-1.11/vcf.c:4413: als ==> also
data/htslib-1.11/vcf.c:4439: als ==> also
data/htslib-1.11/vcf.c:4442: als ==> also
data/htslib-1.11/vcf.c:4442: als ==> also
data/htslib-1.11/vcf.c:4446: als ==> also
data/htslib-1.11/vcf.c:4449: als ==> also
data/htslib-1.11/vcf.c:4456: als ==> also
data/htslib-1.11/vcf.c:4465: als ==> also
data/htslib-1.11/vcf.c:4467: als ==> also
data/htslib-1.11/vcf.c:4470: als ==> also
data/htslib-1.11/configure:4350: creat ==> create
data/htslib-1.11/cram/cram_encode.c:391: BA ==> BY, BE
data/htslib-1.11/cram/cram_encode.c:1633: BA ==> BY, BE
data/htslib-1.11/cram/cram_encode.c:3020: BA ==> BY, BE
data/htslib-1.11/cram/cram_io.c:581: flate ==> flat
data/htslib-1.11/cram/cram_io.c:632: strat ==> start, strata
data/htslib-1.11/cram/cram_io.c:737: strat ==> start, strata
data/htslib-1.11/cram/cram_io.c:761: strat ==> start, strata
data/htslib-1.11/cram/cram_io.c:803: reenabled ==> re-enabled
data/htslib-1.11/cram/cram_io.c:1190: strat ==> start, strata
data/htslib-1.11/cram/cram_io.c:1201: strat ==> start, strata
data/htslib-1.11/cram/cram_io.c:1203: strat ==> start, strata
data/htslib-1.11/cram/cram_io.c:1205: strat ==> start, strata
data/htslib-1.11/cram/cram_io.c:1278: strat ==> start, strata
data/htslib-1.11/cram/cram_io.c:1493: strat ==> start, strata
data/htslib-1.11/cram/cram_io.c:1496: strat ==> start, strata
data/htslib-1.11/cram/cram_io.c:1572: strat ==> start, strata
data/htslib-1.11/cram/cram_io.c:1572: strat ==> start, strata
data/htslib-1.11/cram/cram_io.c:1578: strat ==> start, strata
data/htslib-1.11/cram/cram_io.c:1618: strat ==> start, strata
data/htslib-1.11/cram/cram_io.c:3508: BA ==> BY, BE
data/htslib-1.11/cram/cram_structs.h:237: strat ==> start, strata
data/htslib-1.11/cram/mFILE.c:140: alloced ==> allocated
data/htslib-1.11/cram/mFILE.c:212: alloced ==> allocated
data/htslib-1.11/cram/mFILE.c:230: alloced ==> allocated
data/htslib-1.11/cram/mFILE.c:314: alloced ==> allocated
data/htslib-1.11/cram/mFILE.c:369: Mmaped ==> Mapped
data/htslib-1.11/cram/mFILE.c:387: mmaped ==> mapped
data/htslib-1.11/cram/mFILE.c:425: mmaped ==> mapped
data/htslib-1.11/cram/mFILE.c:536: alloced ==> allocated
data/htslib-1.11/cram/mFILE.c:537: alloced ==> allocated
data/htslib-1.11/cram/mFILE.c:537: alloced ==> allocated
data/htslib-1.11/cram/mFILE.c:540: alloced ==> allocated
data/htslib-1.11/cram/mFILE.h:43: alloced ==> allocated
data/htslib-1.11/cram/rANS_byte.h:4: ANS ==> AND
data/htslib-1.11/cram/cram_decode.c:1448: BA ==> BY, BE
data/htslib-1.11/cram/cram_decode.c:1544: BA ==> BY, BE
data/htslib-1.11/cram/cram_decode.c:1597: BA ==> BY, BE
data/htslib-1.11/htslib/synced_bcf_reader.h:114: als ==> also
data/htslib-1.11/htslib/synced_bcf_reader.h:300: als ==> also
data/htslib-1.11/htslib/vcf.h:185: als ==> also
data/htslib-1.11/htslib/vcf.h:186: als ==> also
data/htslib-1.11/test/c1#unknown.sam:2: permuations ==> permutations
data/htslib-1.11/test/ce#1.sam:2: BA ==> BY, BE
data/htslib-1.11/test/ce#1000.sam:6: BA ==> BY, BE
data/htslib-1.11/test/ce#1000.sam:15: BA ==> BY, BE
data/htslib-1.11/test/ce#1000.sam:26: DAA ==> DATA
data/htslib-1.11/test/ce#1000.sam:38: BA ==> BY, BE
data/htslib-1.11/test/ce#1000.sam:51: BA ==> BY, BE
data/htslib-1.11/test/ce#1000.sam:72: BA ==> BY, BE
data/htslib-1.11/test/ce#1000.sam:73: BA ==> BY, BE
data/htslib-1.11/test/ce#1000.sam:79: BA ==> BY, BE
data/htslib-1.11/test/ce#1000.sam:83: DAA ==> DATA
data/htslib-1.11/test/ce#1000.sam:88: BA ==> BY, BE
data/htslib-1.11/test/ce#1000.sam:95: BA ==> BY, BE
data/htslib-1.11/test/ce#1000.sam:97: BA ==> BY, BE
data/htslib-1.11/test/ce#1000.sam:100: BA ==> BY, BE
data/htslib-1.11/test/ce#1000.sam:106: DAA ==> DATA
data/htslib-1.11/test/ce#1000.sam:160: DAA ==> DATA
data/htslib-1.11/test/ce#1000.sam:170: BA ==> BY, BE
data/htslib-1.11/test/ce#1000.sam:240: BA ==> BY, BE
data/htslib-1.11/test/ce#1000.sam:247: BA ==> BY, BE
data/htslib-1.11/test/ce#1000.sam:248: BA ==> BY, BE
data/htslib-1.11/test/ce#1000.sam:248: BA ==> BY, BE
data/htslib-1.11/test/ce#1000.sam:250: BA ==> BY, BE
data/htslib-1.11/test/ce#1000.sam:281: BA ==> BY, BE
data/htslib-1.11/test/ce#1000.sam:294: BA ==> BY, BE
data/htslib-1.11/test/ce#1000.sam:300: BA ==> BY, BE
data/htslib-1.11/test/ce#1000.sam:312: BA ==> BY, BE
data/htslib-1.11/test/ce#1000.sam:322: BA ==> BY, BE
data/htslib-1.11/test/ce#1000.sam:349: BA ==> BY, BE
data/htslib-1.11/test/ce#1000.sam:356: BA ==> BY, BE
data/htslib-1.11/test/ce#1000.sam:361: BA ==> BY, BE
data/htslib-1.11/test/ce#1000.sam:381: BA ==> BY, BE
data/htslib-1.11/test/ce#1000.sam:383: BA ==> BY, BE
data/htslib-1.11/test/ce#1000.sam:404: BA ==> BY, BE
data/htslib-1.11/test/ce#1000.sam:418: DAA ==> DATA
data/htslib-1.11/test/ce#1000.sam:419: BA ==> BY, BE
data/htslib-1.11/test/ce#1000.sam:431: BA ==> BY, BE
data/htslib-1.11/test/ce#1000.sam:440: BA ==> BY, BE
data/htslib-1.11/test/ce#1000.sam:449: BA ==> BY, BE
data/htslib-1.11/test/ce#1000.sam:457: BA ==> BY, BE
data/htslib-1.11/test/ce#1000.sam:469: BA ==> BY, BE
data/htslib-1.11/test/ce#1000.sam:490: BA ==> BY, BE
data/htslib-1.11/test/ce#1000.sam:539: BA ==> BY, BE
data/htslib-1.11/test/ce#1000.sam:562: BA ==> BY, BE
data/htslib-1.11/test/ce#1000.sam:562: BA ==> BY, BE
data/htslib-1.11/test/ce#1000.sam:581: BA ==> BY, BE
data/htslib-1.11/test/ce#1000.sam:584: BA ==> BY, BE
data/htslib-1.11/test/ce#1000.sam:603: BA ==> BY, BE
data/htslib-1.11/test/ce#1000.sam:626: BA ==> BY, BE
data/htslib-1.11/test/ce#1000.sam:667: BA ==> BY, BE
data/htslib-1.11/test/ce#1000.sam:692: BA ==> BY, BE
data/htslib-1.11/test/ce#1000.sam:712: BA ==> BY, BE
data/htslib-1.11/test/ce#1000.sam:714: BA ==> BY, BE
data/htslib-1.11/test/ce#1000.sam:727: DAA ==> DATA
data/htslib-1.11/test/ce#1000.sam:773: BA ==> BY, BE
data/htslib-1.11/test/ce#1000.sam:785: BA ==> BY, BE
data/htslib-1.11/test/ce#1000.sam:808: BA ==> BY, BE
data/htslib-1.11/test/ce#1000.sam:830: BA ==> BY, BE
data/htslib-1.11/test/ce#1000.sam:831: BA ==> BY, BE
data/htslib-1.11/test/ce#1000.sam:840: BA ==> BY, BE
data/htslib-1.11/test/ce#1000.sam:840: BA ==> BY, BE
data/htslib-1.11/test/ce#1000.sam:849: BA ==> BY, BE
data/htslib-1.11/test/ce#1000.sam:850: BA ==> BY, BE
data/htslib-1.11/test/ce#1000.sam:860: BA ==> BY, BE
data/htslib-1.11/test/ce#1000.sam:880: BA ==> BY, BE
data/htslib-1.11/test/ce#1000.sam:939: BA ==> BY, BE
data/htslib-1.11/test/ce#1000.sam:939: BA ==> BY, BE
data/htslib-1.11/test/ce#1000.sam:954: BA ==> BY, BE
data/htslib-1.11/test/ce#1000.sam:960: BA ==> BY, BE
data/htslib-1.11/test/ce#1000.sam:964: BA ==> BY, BE
data/htslib-1.11/test/ce#1000.sam:980: BA ==> BY, BE
data/htslib-1.11/test/ce#1000.sam:981: BA ==> BY, BE
data/htslib-1.11/test/ce#1000.sam:989: BA ==> BY, BE
data/htslib-1.11/test/ce#2.sam:2: BA ==> BY, BE
data/htslib-1.11/test/ce#5.sam:6: BA ==> BY, BE
data/htslib-1.11/test/ce#5.sam:7: BA ==> BY, BE
data/htslib-1.11/test/ce#5.sam:8: BA ==> BY, BE
data/htslib-1.11/test/ce#5.sam:9: BA ==> BY, BE
data/htslib-1.11/test/ce#5.sam:10: BA ==> BY, BE
data/htslib-1.11/test/ce#5.sam:11: BA ==> BY, BE
data/htslib-1.11/test/ce#5b.sam:6: BA ==> BY, BE
data/htslib-1.11/test/ce#5b.sam:7: BA ==> BY, BE
data/htslib-1.11/test/ce#5b.sam:8: BA ==> BY, BE
data/htslib-1.11/test/ce#5b.sam:9: BA ==> BY, BE
data/htslib-1.11/test/ce#5b.sam:10: BA ==> BY, BE
data/htslib-1.11/test/ce#large_seq.sam:3: BA ==> BY, BE
data/htslib-1.11/test/ce#tag_depadded.sam:4: BA ==> BY, BE
data/htslib-1.11/test/ce#tag_depadded.sam:5: BA ==> BY, BE
data/htslib-1.11/test/ce#tag_depadded.sam:6: BA ==> BY, BE
data/htslib-1.11/test/ce#tag_depadded.sam:7: BA ==> BY, BE
data/htslib-1.11/test/ce#tag_depadded.sam:8: BA ==> BY, BE
data/htslib-1.11/test/ce#tag_padded.sam:4: BA ==> BY, BE
data/htslib-1.11/test/ce#tag_padded.sam:5: BA ==> BY, BE
data/htslib-1.11/test/ce#tag_padded.sam:6: BA ==> BY, BE
data/htslib-1.11/test/ce#tag_padded.sam:7: BA ==> BY, BE
data/htslib-1.11/test/ce#tag_padded.sam:8: BA ==> BY, BE
data/htslib-1.11/test/ce#unmap.sam:1: BA ==> BY, BE
data/htslib-1.11/test/ce#unmap.sam:2: BA ==> BY, BE
data/htslib-1.11/test/ce#unmap.sam:3: BA ==> BY, BE
data/htslib-1.11/test/ce#unmap.sam:4: BA ==> BY, BE
data/htslib-1.11/test/ce#unmap.sam:5: BA ==> BY, BE
data/htslib-1.11/test/ce#unmap.sam:6: BA ==> BY, BE
data/htslib-1.11/test/ce#unmap1.sam:11: BA ==> BY, BE
data/htslib-1.11/test/ce#unmap2.sam:11: BA ==> BY, BE
data/htslib-1.11/test/ce#unmap2.sam:20: BA ==> BY, BE
data/htslib-1.11/test/ce#unmap2.sam:21: BA ==> BY, BE
data/htslib-1.11/test/fastqs.fq:92: BA ==> BY, BE
data/htslib-1.11/test/fastqs.fq:204: BA ==> BY, BE
data/htslib-1.11/test/index.sam:16: BA ==> BY, BE
data/htslib-1.11/test/index.sam:32: BA ==> BY, BE
data/htslib-1.11/test/index.sam:35: BA ==> BY, BE
data/htslib-1.11/test/index.sam:43: BA ==> BY, BE
data/htslib-1.11/test/index.sam:58: BA ==> BY, BE
data/htslib-1.11/test/index.sam:67: BA ==> BY, BE
data/htslib-1.11/test/index.sam:97: BA ==> BY, BE
data/htslib-1.11/test/index.sam:97: BA ==> BY, BE
data/htslib-1.11/test/index.sam:120: BA ==> BY, BE
data/htslib-1.11/test/index.sam:145: BA ==> BY, BE
data/htslib-1.11/test/index.sam:147: BA ==> BY, BE
data/htslib-1.11/test/index.sam:147: BA ==> BY, BE
data/htslib-1.11/test/index.sam:153: BA ==> BY, BE
data/htslib-1.11/test/index.sam:171: BA ==> BY, BE
data/htslib-1.11/test/index.sam:172: BA ==> BY, BE
data/htslib-1.11/test/index.sam:174: BA ==> BY, BE
data/htslib-1.11/test/index.sam:187: BA ==> BY, BE
data/htslib-1.11/test/no_hdr_sq_1.expected.sam:11: BA ==> BY, BE
data/htslib-1.11/test/no_hdr_sq_1.expected.sam:12: BA ==> BY, BE
data/htslib-1.11/test/no_hdr_sq_1.expected.sam:13: BA ==> BY, BE
data/htslib-1.11/test/no_hdr_sq_1.expected.sam:14: BA ==> BY, BE
data/htslib-1.11/test/no_hdr_sq_1.expected.sam:15: BA ==> BY, BE
data/htslib-1.11/test/no_hdr_sq_1.expected.sam:16: BA ==> BY, BE
data/htslib-1.11/test/test-bcf-sr.pl:127: als ==> also
data/htslib-1.11/test/test-bcf-sr.pl:130: als ==> also
data/htslib-1.11/test/test-bcf-sr.pl:140: als ==> also
data/htslib-1.11/test/test-bcf-sr.pl:143: als ==> also
data/htslib-1.11/test/test-bcf-sr.pl:153: als ==> also
data/htslib-1.11/test/test-bcf-sr.pl:156: als ==> also
data/htslib-1.11/test/test-vcf-hdr-in.vcf:7: Lod ==> Load
data/htslib-1.11/test/test-vcf-hdr-in.vcf:8: Lod ==> Load
data/htslib-1.11/test/test-vcf-hdr.out:8: Lod ==> Load
data/htslib-1.11/test/test-vcf-hdr.out:9: Lod ==> Load
data/htslib-1.11/test/test_str2int.c:188: hel ==> help, hell, heal
data/htslib-1.11/test/xx#large_aux.sam:2: ba ==> by, be
data/htslib-1.11/test/xx#large_aux.sam:2: fo ==> of, for
data/htslib-1.11/test/xx#large_aux.sam:3: ba ==> by, be
data/htslib-1.11/test/xx#large_aux.sam:3: fo ==> of, for
data/htslib-1.11/test/xx#large_aux.sam:3: Ba ==> By, be
data/htslib-1.11/test/xx#large_aux.sam:3: Fo ==> Of, for
data/htslib-1.11/test/test.pl:62: nNumber ==> number
data/htslib-1.11/test/test.pl:185: tthe ==> the
data/htslib-1.11/test/test.pl:209: tthe ==> the
data/htslib-1.11/test/longrefs/longref.sam:2: BA ==> BY, BE
data/htslib-1.11/test/longrefs/longref.sam:11: BA ==> BY, BE
data/htslib-1.11/test/longrefs/longref.sam:22: DAA ==> DATA
data/htslib-1.11/test/longrefs/longref.sam:34: BA ==> BY, BE
data/htslib-1.11/test/longrefs/longref.sam:51: BA ==> BY, BE
data/htslib-1.11/test/longrefs/longref.sam:55: BA ==> BY, BE
data/htslib-1.11/test/longrefs/longref.sam:71: BA ==> BY, BE
data/htslib-1.11/test/longrefs/longref.sam:72: BA ==> BY, BE
data/htslib-1.11/test/longrefs/longref.sam:80: BA ==> BY, BE
data/htslib-1.11/test/longrefs/longref_itr.expected.sam:2: BA ==> BY, BE
data/htslib-1.11/test/longrefs/longref_itr.expected.sam:11: BA ==> BY, BE
data/htslib-1.11/test/longrefs/longref_itr.expected.sam:22: DAA ==> DATA
data/htslib-1.11/test/longrefs/longref_multi.expected.sam:2: BA ==> BY, BE
data/htslib-1.11/test/longrefs/longref_multi.expected.sam:11: BA ==> BY, BE
data/htslib-1.11/test/longrefs/longref_multi.expected.sam:22: DAA ==> DATA
data/htslib-1.11/test/longrefs/longref_multi.expected.sam:34: BA ==> BY, BE
data/htslib-1.11/debian/changelog:50: erronously ==> erroneously
data/htslib-1.11/debian/rules:79: independant ==> independent
data/htslib-1.11/.pc/testShebang.patch/test/test.pl:62: nNumber ==> number
data/htslib-1.11/.pc/testShebang.patch/test/test.pl:185: tthe ==> the
data/htslib-1.11/.pc/testShebang.patch/test/test.pl:209: tthe ==> the
data/htslib-1.11/.pc/cram_to_bam_export.patch/cram/cram_decode.c:1448: BA ==> BY, BE
data/htslib-1.11/.pc/cram_to_bam_export.patch/cram/cram_decode.c:1544: BA ==> BY, BE
data/htslib-1.11/.pc/cram_to_bam_export.patch/cram/cram_decode.c:1597: BA ==> BY, BE