data/hyphy-2.5.23+dfsg/LICENSE:10: Hepler ==> Helper data/hyphy-2.5.23+dfsg/README.md:14: gard ==> guard data/hyphy-2.5.23+dfsg/bench.js:93: GARD ==> GUARD data/hyphy-2.5.23+dfsg/run_unit_tests.sh:19: faield ==> failed data/hyphy-2.5.23+dfsg/CMakeLists.txt:611: GARD ==> GUARD data/hyphy-2.5.23+dfsg/CMakeLists.txt:611: GARD ==> GUARD data/hyphy-2.5.23+dfsg/Examples/Categories/definitions+MLE.bf:25: enrty ==> entry data/hyphy-2.5.23+dfsg/Examples/Categories/definitions2.bf:23: continous ==> continuous data/hyphy-2.5.23+dfsg/Examples/Categories/definitions2.bf:192: distrubution ==> distribution data/hyphy-2.5.23+dfsg/Examples/Categories/definitions2.bf:219: distrubution ==> distribution data/hyphy-2.5.23+dfsg/Examples/Categories/definitions2.bf:247: distrubution ==> distribution data/hyphy-2.5.23+dfsg/Examples/ConstraintDefinition/ReplicateConstraint1.bf:59: containts ==> contains data/hyphy-2.5.23+dfsg/Examples/ConstraintDefinition/ReplicateConstraint1.bf:77: accross ==> across data/hyphy-2.5.23+dfsg/Examples/ConstraintDefinition/ReplicateConstraint2.bf:29: aslo ==> also data/hyphy-2.5.23+dfsg/Examples/DataFilters/HKY852blocks.bf:3: parititions ==> partitions data/hyphy-2.5.23+dfsg/Examples/DataFilters/HKY852blocks2models.bf:5: parititions ==> partitions data/hyphy-2.5.23+dfsg/Examples/MoreComplexModels/ExonIntron.bf:67: intergrated ==> integrated data/hyphy-2.5.23+dfsg/Examples/MoreComplexModels/Models/MG94x2.mdl:41: Ser ==> Set data/hyphy-2.5.23+dfsg/Examples/SimpleAnalyses/K2Pshared.bf:11: accross ==> across data/hyphy-2.5.23+dfsg/Examples/Simulation/ParametricBootstrap.bf:155: lik ==> like, lick, link data/hyphy-2.5.23+dfsg/res/GeneticCodes/Vertebratemtdna.cod:12: Ser ==> Set data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/AddABias.ibf:172: Subsitution ==> Substitution data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/BGM.bf:147: minium ==> minimum data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/BGM.bf:154: minium ==> minimum data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/CleanGaps.bf:32: retrun ==> return data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/CodonModelCompare.bf:618: lenghts ==> lengths data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/DistanceMatrix.bf:99: Peform ==> Perform data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:14: sinlge ==> single data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:27: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:30: GARD ==> GUARD data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:62: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:62: GARD ==> GUARD data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:74: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:80: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:80: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:87: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:94: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:94: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:95: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:96: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:102: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:102: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:104: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:105: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:105: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:106: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:106: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:110: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:110: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:115: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:115: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:116: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:116: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:120: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:121: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:121: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:124: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:124: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:124: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:126: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:131: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:136: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:138: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:139: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:139: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:140: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:141: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:141: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:143: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:143: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:148: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:149: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:151: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:156: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:157: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:159: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:165: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:165: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:165: GARD ==> GUARD data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:166: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:167: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:169: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:169: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:170: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:171: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:175: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:175: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:176: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:176: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:176: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:176: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:176: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:177: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:178: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:180: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:180: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:180: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:180: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:181: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:182: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:185: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:185: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:186: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:186: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:189: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:192: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:195: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:195: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:195: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:201: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:205: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:205: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:205: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:210: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:210: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:211: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:211: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:212: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:213: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:214: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:216: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:216: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:219: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:221: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:221: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:222: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:223: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:223: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:225: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:225: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:226: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:226: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:227: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:236: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:236: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:242: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:245: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:245: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:245: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:246: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:246: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:247: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:247: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:247: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:248: lenth ==> length data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:251: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:254: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:254: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:254: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:254: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:255: GARD ==> GUARD data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:255: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:255: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:261: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:261: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:261: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:262: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:264: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:266: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:266: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:266: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:266: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:266: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:266: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:271: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:272: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:278: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:278: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:279: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:279: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:280: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:285: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:285: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:286: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:287: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:288: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:290: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:290: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:291: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:291: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:301: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:310: GARD ==> GUARD data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:312: GARD ==> GUARD data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:316: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:320: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:323: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:331: sinlge ==> single data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:333: sinlge ==> single data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:338: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:338: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:339: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:339: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:340: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:340: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:341: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:342: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:342: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:343: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:347: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:350: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:350: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:357: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:359: GARD ==> GUARD data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:363: GARD ==> GUARD data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:367: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:368: GARD ==> GUARD data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:369: GARD ==> GUARD data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:379: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:387: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:395: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:398: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:404: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:416: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:419: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:442: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:442: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:442: GARD ==> GUARD data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:450: GARD ==> GUARD data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:455: GARD ==> GUARD data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:464: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:469: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:475: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:480: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:491: GARD ==> GUARD data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:494: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:504: Bolean ==> Boolean data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:510: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:521: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:529: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:529: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:530: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:532: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:536: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:537: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:538: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:538: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:539: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:539: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:541: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:562: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:572: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:579: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:579: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:579: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:591: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:592: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:597: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:598: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:599: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:599: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:603: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:605: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:606: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:607: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:608: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:612: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:613: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:614: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:618: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:618: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:629: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:646: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:647: Dictonary ==> Dictionary data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:648: Bolean ==> Boolean data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:651: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:656: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:657: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:657: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:658: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:658: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:658: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:658: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:659: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:659: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:660: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:660: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:662: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:664: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:665: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:665: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:668: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:668: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:672: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:673: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:675: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:676: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:676: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:677: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:679: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:679: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:682: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:684: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:685: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:685: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:685: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:685: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:685: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:685: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:687: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:688: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:689: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:690: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:691: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:691: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:692: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:694: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:695: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:695: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:697: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:698: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:698: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:699: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:699: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:701: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:701: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:702: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:702: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:705: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:706: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:707: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:710: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:710: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:711: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:711: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:713: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:713: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:713: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:713: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:713: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:717: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:718: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:718: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:718: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:718: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:719: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:719: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:719: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:719: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:719: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:720: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:723: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:724: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:725: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:726: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:726: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:728: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:729: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:730: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:730: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:731: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:731: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:733: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:734: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:734: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:734: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:736: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:738: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:738: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:740: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:741: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:741: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:741: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:745: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:745: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:746: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:748: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:748: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:749: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:749: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:750: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:751: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:752: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:752: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:752: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:755: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:762: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:766: Dictonary ==> Dictionary data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:768: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:780: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:781: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:783: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:783: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:783: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:789: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:791: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:792: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:792: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:792: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:800: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:806: Dictonary ==> Dictionary data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:808: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:811: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:819: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:820: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:821: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:824: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:835: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:836: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:836: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:836: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:836: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:836: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:852: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:853: Dictonary ==> Dictionary data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:854: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:856: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:860: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:861: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:861: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:862: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:863: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:864: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:867: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:872: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:873: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:874: Dictonary ==> Dictionary data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:876: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:878: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:879: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:880: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:884: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:889: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:910: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:913: Bolean ==> Boolean data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:915: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:920: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:924: Dictonary ==> Dictionary data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:928: Dictonary ==> Dictionary data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:930: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:933: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:943: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:944: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:959: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:960: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:961: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:967: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:973: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:975: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:975: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:975: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:975: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:975: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:1004: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:1006: Dictonary ==> Dictionary data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:1009: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:1011: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:1013: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:1020: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:1028: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:1032: assending ==> ascending data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GARD.bf:1033: gard ==> guard data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GA_CHC_Binary.ibf:164: aNumber ==> a number data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GA_CHC_Binary.ibf:165: aNumber ==> a number data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GA_CHC_Binary.ibf:167: aNumber ==> a number data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GA_CHC_Binary.ibf:167: aNumber ==> a number data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GA_CHC_Binary.ibf:168: aNumber ==> a number data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/GA_CHC_Binary.ibf:174: lentgh ==> length data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/KHTest.bf:172: expeceted ==> expected data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/KHTest.bf:220: expeceted ==> expected data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/LEISR.bf:247: invalide ==> invalid data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/LRTRecombTest.bf:165: expeceted ==> expected data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/LRTRecombTest.bf:247: expeceted ==> expected data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/LRTRecombTest.bf:247: alignemt ==> alignment data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/ModelTest.bf:633: nNumber ==> number data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/NucModelCompare.bf:484: lenghts ==> lengths data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/PairwiseRelativeRate.bf:79: substituions ==> substitutions data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/PairwiseRelativeRate.bf:195: encoutered ==> encountered data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/PairwiseRelativeRatio.bf:320: encoutered ==> encountered data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/SGEmulator.bf:638: waN ==> want data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/SGEmulator.bf:665: waN ==> want data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/SGEmulator.bf:665: waN ==> want data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/SGEmulator.bf:669: waN ==> want data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/SGEmulator.bf:669: waN ==> want data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/SGEmulator.bf:702: waN ==> want data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/SGEmulator.bf:702: waN ==> want data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/SGEmulator.bf:706: waN ==> want data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/SGEmulator.bf:706: waN ==> want data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/SGEmulator.bf:729: waN ==> want data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/SGEmulator_MF.bf:487: waN ==> want data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/SGEmulator_MF.bf:514: waN ==> want data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/SGEmulator_MF.bf:514: waN ==> want data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/SGEmulator_MF.bf:518: waN ==> want data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/SGEmulator_MF.bf:518: waN ==> want data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/SGEmulator_MF.bf:551: waN ==> want data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/SGEmulator_MF.bf:551: waN ==> want data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/SGEmulator_MF.bf:555: waN ==> want data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/SGEmulator_MF.bf:555: waN ==> want data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/SGEmulator_MF.bf:578: waN ==> want data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/SimilarityPlot.bf:99: repID ==> rapid data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/SimilarityPlot.bf:99: repID ==> rapid data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/SimilarityPlot.bf:99: repID ==> rapid data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/SimilarityPlot.bf:99: repID ==> rapid data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/SlidingWindowAnalysis.bf:256: Finshed ==> Finished data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/TestBranchDNDS.bf:412: som ==> some data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/TestBranchDNDS.bf:418: som ==> some data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/TestClade.bf:1049: boostrap ==> bootstrap data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/branchSwappingFunctions.bf:251: upTo ==> up to data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/branchSwappingFunctions.bf:253: upTo ==> up to data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/branchSwappingFunctions.bf:255: upTo ==> up to data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/categoryEcho.bf:3: Dislpay ==> Display data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/chooseDistanceFormula.def:5: substituions ==> substitutions data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/chooseDistanceFormula.def:17: mulitple ==> multiple data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/chooseDistanceFormula.def:18: substituions ==> substitutions data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/chooseDistanceFormula.def:67: charcters ==> characters data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/dNdSBivariateRateAnalysis.bf:168: inital ==> initial data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/dNdSDistributionComparison.bf:300: inital ==> initial data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/dNdSRateAnalysis.bf:7: dum ==> dumb data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/dNdSRateAnalysis.bf:422: Recommened ==> Recommended data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/dNdSRateAnalysis.bf:460: inital ==> initial data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/dNdSRateAnalysis.bf:776: receieves ==> receives data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/dNdSRateAnalysis.bf:888: varN ==> warn data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/dNdSRateAnalysis.bf:892: varN ==> warn data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/dNdSRateAnalysis.bf:893: varN ==> warn data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/dNdSResultProcessor.bf:1160: Recommened ==> Recommended data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/dNdSResultProcessor.bf:1174: Recommened ==> Recommended data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/files.lst:26: ADN ==> AND data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/files.lst:41: Peform ==> Perform data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/files.lst:97: GARD ==> GUARD data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/files.lst:97: GARD ==> GUARD data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/files.lst:97: GARD ==> GUARD data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/files.lst:97: GARD ==> GUARD data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/files.lst:100: som ==> some data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/files.lst:111: optinally ==> optionally data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/molclockBootstrap.bf:154: encoutered ==> encountered data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/relrateBootstrap.bf:283: encoutered ==> encountered data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/relratioBootstrap.bf:109: encoutered ==> encountered data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/Miscellaneous/phylohandbook/NeutralExpectation.bf:56: frequences ==> frequencies data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/Miscellaneous/phylohandbook/dSdN.bf:185: tE ==> the, be, we data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/Miscellaneous/phylohandbook/dSdN.bf:186: tE ==> the, be, we data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/ProteinAnalyses/ProteinGTRFit.bf:31: Nickle ==> Nickel data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/ProteinAnalyses/ProteinGTRFit.bf:33: Nickle ==> Nickel data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/SelectionAnalyses/FUBAR.bf:441: computaion ==> computation data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/SelectionAnalyses/RELAX.bf:1075: alterative ==> alternative data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/SelectionAnalyses/SLAC.bf:682: upto ==> up to data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/SelectionAnalyses/SLAC.bf:684: upto ==> up to data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/SelectionAnalyses/contrast-fel.bf:122: positves ==> positives data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/SelectionAnalyses/contrast-fel.bf:123: positves ==> positives data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/TemplateModels/ECM+F+omega.mdl:109: indeces ==> indices data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/TemplateModels/ECM+F.mdl:107: indeces ==> indices data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/TemplateModels/ECM+F3x4.mdl:137: indeces ==> indices data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/TemplateModels/ECM+MLFREQS.mdl:116: indeces ==> indices data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/TemplateModels/ECM.mdl:109: indeces ==> indices data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/TemplateModels/GY94customF3x4.mdl:2: substituions ==> substitutions data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/TemplateModels/MG94custom.mdl:2: substituions ==> substitutions data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/TemplateModels/MG94customCF3x4.mdl:2: substituions ==> substitutions data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/TemplateModels/MG94customF1x4.mdl:2: substituions ==> substitutions data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/TemplateModels/MG94customFreqs.mdl:2: substituions ==> substitutions data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/TemplateModels/MG94wAA.mdl:2: substituions ==> substitutions data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/TemplateModels/MG94wAAF61.mdl:2: substituions ==> substitutions data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/TemplateModels/MG94wAAFreqs.mdl:2: substituions ==> substitutions data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/TemplateModels/MG94wAAUserFreqs.mdl:2: substituions ==> substitutions data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/TemplateModels/MG94x2.mdl:2: substituions ==> substitutions data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/TemplateModels/MG94x2.mdl:311: nNumber ==> number data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/TemplateModels/MG94x2.mdl:317: nNumber ==> number data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/TemplateModels/NRM+Freqs.mdl:1: expicit ==> explicit data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/TemplateModels/STGRM.mdl:1: matix ==> matrix data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/TemplateModels/UniversalCode.def:16: Ser ==> Set data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/TemplateModels/UniversalCode.def:119: Ser ==> Set data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/TemplateModels/UniversalCode.def:120: Ser ==> Set data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/TemplateModels/UniversalCode.def:140: Ser ==> Set data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/TemplateModels/UniversalCode.def:141: Ser ==> Set data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/TemplateModels/UniversalCode.def:158: Ser ==> Set data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/TemplateModels/UniversalCode.def:178: Ser ==> Set data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/TemplateModels/UniversalCode.def:179: Ser ==> Set data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/TemplateModels/chooseGeneticCode.def:18: Ser ==> Set data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/TemplateModels/chooseGeneticCode.def:218: Ser ==> Set data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/TemplateModels/chooseGeneticCode.def:219: Ser ==> Set data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/TemplateModels/chooseGeneticCode.def:241: Ser ==> Set data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/TemplateModels/chooseGeneticCode.def:242: Ser ==> Set data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/TemplateModels/chooseGeneticCode.def:261: Ser ==> Set data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/TemplateModels/chooseGeneticCode.def:283: Ser ==> Set data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/TemplateModels/chooseGeneticCode.def:284: Ser ==> Set data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/TemplateModels/chooseGeneticCode.def:316: Ser ==> Set data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/TemplateModels/chooseGeneticCode.def:397: Ser ==> Set data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/TemplateModels/defineGamma.mdl:55: alph ==> alpha data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/TemplateModels/defineGamma.mdl:57: alph ==> alpha data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/TemplateModels/defineGamma.mdl:61: alph ==> alpha data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/TemplateModels/defineGamma.mdl:76: distrubution ==> distribution data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/TemplateModels/defineGamma.mdl:77: distrubution ==> distribution data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/TemplateModels/defineGamma.mdl:77: restriced ==> restricted data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/TemplateModels/defineHM.mdl:55: alph ==> alpha data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/TemplateModels/defineHM.mdl:57: alph ==> alpha data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/TemplateModels/defineHM.mdl:61: alph ==> alpha data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/TemplateModels/defineHM.mdl:73: distrubution ==> distribution data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/TemplateModels/defineHM.mdl:74: distrubution ==> distribution data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/TemplateModels/defineHM.mdl:74: restriced ==> restricted data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/TemplateModels/EmpiricalAA/modellist.ibf:52: Nickle ==> Nickel data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/TemplateModels/EmpiricalAA/modellist.ibf:63: Nickle ==> Nickel data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/Utility/AncestralMapper.bf:84: correponds ==> corresponds data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/Utility/AncestralMapper.bf:87: unambigous ==> unambiguous data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/Utility/AncestralMapper.bf:319: consisent ==> consistent data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/Utility/ReadDelimitedFiles.bf:131: aLine ==> align, a line, line, saline data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/Utility/ReadDelimitedFiles.bf:132: aLine ==> align, a line, line, saline data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/Utility/ReadDelimitedFiles.bf:137: aLine ==> align, a line, line, saline data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/libv3/IOFunctions.bf:30: propmts ==> prompts data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/libv3/all-terms.bf:142: defintions ==> definitions data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/libv3/convenience/math.bf:260: Dictonary ==> Dictionary data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/libv3/convenience/math.bf:260: Dictonary ==> Dictionary data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/libv3/convenience/regexp.bf:8: occurence ==> occurrence data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/libv3/convenience/regexp.bf:78: upto ==> up to data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/libv3/convenience/regexp.bf:79: upto ==> up to data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/libv3/models/frequencies.bf:9: chatacter ==> character data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/libv3/models/frequencies.bf:78: dependancies ==> dependencies data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/libv3/models/parameters.bf:780: Geneate ==> Generate data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/libv3/models/protein.bf:21: Nickle ==> Nickel data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/libv3/models/protein.bf:22: Nickle ==> Nickel data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/libv3/tasks/ancestral.bf:175: correponds ==> corresponds data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/libv3/tasks/ancestral.bf:178: unambigous ==> unambiguous data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/libv3/tasks/ancestral.bf:495: occured ==> occurred data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/libv3/tasks/ancestral.bf:671: consisent ==> consistent data/hyphy-2.5.23+dfsg/res/TemplateBatchFiles/libv3/tasks/estimators.bf:355: lenghts ==> lengths data/hyphy-2.5.23+dfsg/src/contrib/regex.cpp:1151: tempory ==> temporary data/hyphy-2.5.23+dfsg/src/core/_hyExecutionContext.cpp:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/alignment.cpp:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/associative_list.cpp:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/avllist.cpp:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/avllist.cpp:153: hist ==> heist, his data/hyphy-2.5.23+dfsg/src/core/avllist.cpp:160: hist ==> heist, his data/hyphy-2.5.23+dfsg/src/core/avllist.cpp:163: hist ==> heist, his data/hyphy-2.5.23+dfsg/src/core/avllist.cpp:175: hist ==> heist, his data/hyphy-2.5.23+dfsg/src/core/avllist.cpp:178: hist ==> heist, his data/hyphy-2.5.23+dfsg/src/core/avllist.cpp:181: hist ==> heist, his data/hyphy-2.5.23+dfsg/src/core/avllist.cpp:186: hist ==> heist, his data/hyphy-2.5.23+dfsg/src/core/avllist.cpp:187: hist ==> heist, his data/hyphy-2.5.23+dfsg/src/core/avllist.cpp:202: hist ==> heist, his data/hyphy-2.5.23+dfsg/src/core/avllist.cpp:233: hist ==> heist, his data/hyphy-2.5.23+dfsg/src/core/avllist.cpp:236: hist ==> heist, his data/hyphy-2.5.23+dfsg/src/core/avllist.cpp:239: hist ==> heist, his data/hyphy-2.5.23+dfsg/src/core/avllist.cpp:244: hist ==> heist, his data/hyphy-2.5.23+dfsg/src/core/avllist.cpp:245: hist ==> heist, his data/hyphy-2.5.23+dfsg/src/core/avllist.cpp:245: hist ==> heist, his data/hyphy-2.5.23+dfsg/src/core/avllist.cpp:247: hist ==> heist, his data/hyphy-2.5.23+dfsg/src/core/avllist.cpp:247: hist ==> heist, his data/hyphy-2.5.23+dfsg/src/core/avllist.cpp:262: hist ==> heist, his data/hyphy-2.5.23+dfsg/src/core/avllist.cpp:294: hist ==> heist, his data/hyphy-2.5.23+dfsg/src/core/avllist.cpp:296: hist ==> heist, his data/hyphy-2.5.23+dfsg/src/core/avllist.cpp:301: hist ==> heist, his data/hyphy-2.5.23+dfsg/src/core/avllist.cpp:362: Constistency ==> Consistency data/hyphy-2.5.23+dfsg/src/core/avllist.cpp:369: Constistency ==> Consistency data/hyphy-2.5.23+dfsg/src/core/avllist.cpp:376: Constistency ==> Consistency data/hyphy-2.5.23+dfsg/src/core/avllist.cpp:382: Constistency ==> Consistency data/hyphy-2.5.23+dfsg/src/core/avllist.cpp:388: Constistency ==> Consistency data/hyphy-2.5.23+dfsg/src/core/avllist.cpp:398: Constistency ==> Consistency data/hyphy-2.5.23+dfsg/src/core/avllist.cpp:436: hist ==> heist, his data/hyphy-2.5.23+dfsg/src/core/avllist.cpp:439: hist ==> heist, his data/hyphy-2.5.23+dfsg/src/core/avllist.cpp:452: hist ==> heist, his data/hyphy-2.5.23+dfsg/src/core/avllist.cpp:466: hist ==> heist, his data/hyphy-2.5.23+dfsg/src/core/avllist.cpp:469: hist ==> heist, his data/hyphy-2.5.23+dfsg/src/core/avllist.cpp:473: hist ==> heist, his data/hyphy-2.5.23+dfsg/src/core/avllistx.cpp:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/avllistx.cpp:98: hist ==> heist, his data/hyphy-2.5.23+dfsg/src/core/avllistx.cpp:101: hist ==> heist, his data/hyphy-2.5.23+dfsg/src/core/avllistx.cpp:110: hist ==> heist, his data/hyphy-2.5.23+dfsg/src/core/avllistx_iterator.cpp:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/avllistxl.cpp:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/avllistxl.cpp:90: hist ==> heist, his data/hyphy-2.5.23+dfsg/src/core/avllistxl.cpp:93: hist ==> heist, his data/hyphy-2.5.23+dfsg/src/core/avllistxl.cpp:101: hist ==> heist, his data/hyphy-2.5.23+dfsg/src/core/avllistxl_iterator.cpp:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/baseobj.cpp:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/batchlan.cpp:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/batchlan.cpp:1749: desription ==> description data/hyphy-2.5.23+dfsg/src/core/batchlan.cpp:1751: desription ==> description data/hyphy-2.5.23+dfsg/src/core/batchlan.cpp:1894: upto ==> up to data/hyphy-2.5.23+dfsg/src/core/batchlan.cpp:1900: upto ==> up to data/hyphy-2.5.23+dfsg/src/core/batchlan.cpp:1903: upto ==> up to data/hyphy-2.5.23+dfsg/src/core/batchlan.cpp:1909: upto ==> up to data/hyphy-2.5.23+dfsg/src/core/batchlan.cpp:2259: contruction ==> construction data/hyphy-2.5.23+dfsg/src/core/batchlan.cpp:2707: parm ==> param, pram, parma data/hyphy-2.5.23+dfsg/src/core/batchlan.cpp:3263: contruction ==> construction data/hyphy-2.5.23+dfsg/src/core/batchlan.cpp:3384: contruction ==> construction data/hyphy-2.5.23+dfsg/src/core/batchlan.cpp:3546: parms ==> params, prams data/hyphy-2.5.23+dfsg/src/core/batchlan.cpp:3547: parms ==> params, prams data/hyphy-2.5.23+dfsg/src/core/batchlan.cpp:3548: parms ==> params, prams data/hyphy-2.5.23+dfsg/src/core/batchlan.cpp:4029: delimeter ==> delimiter data/hyphy-2.5.23+dfsg/src/core/batchlan.cpp:4032: extaction ==> extraction data/hyphy-2.5.23+dfsg/src/core/batchlan.cpp:4097: delimeter ==> delimiter data/hyphy-2.5.23+dfsg/src/core/batchlan.cpp:4149: bewteen ==> between data/hyphy-2.5.23+dfsg/src/core/batchlan.cpp:4293: upto ==> up to data/hyphy-2.5.23+dfsg/src/core/batchlan.cpp:4305: upto ==> up to data/hyphy-2.5.23+dfsg/src/core/batchlan.cpp:4336: upto ==> up to data/hyphy-2.5.23+dfsg/src/core/batchlan.cpp:4337: upto ==> up to data/hyphy-2.5.23+dfsg/src/core/batchlan.cpp:4338: upto ==> up to data/hyphy-2.5.23+dfsg/src/core/batchlan.cpp:4340: upto ==> up to data/hyphy-2.5.23+dfsg/src/core/batchlan.cpp:4884: upto ==> up to data/hyphy-2.5.23+dfsg/src/core/batchlan.cpp:4887: upto ==> up to data/hyphy-2.5.23+dfsg/src/core/batchlan.cpp:4887: upto ==> up to data/hyphy-2.5.23+dfsg/src/core/batchlan.cpp:4909: upto ==> up to data/hyphy-2.5.23+dfsg/src/core/batchlan2.cpp:11: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/batchlanhelpers.cpp:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/batchlanruntime.cpp:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/batchlanruntime.cpp:1364: contraint ==> constraint data/hyphy-2.5.23+dfsg/src/core/batchlanruntime.cpp:1454: contstraint ==> constraint data/hyphy-2.5.23+dfsg/src/core/batchlanruntime.cpp:1460: contraints ==> constraints data/hyphy-2.5.23+dfsg/src/core/batchlanruntime.cpp:1577: paramters ==> parameters data/hyphy-2.5.23+dfsg/src/core/batchlanruntime.cpp:3904: wil ==> will, well data/hyphy-2.5.23+dfsg/src/core/calcnode.cpp:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/calcnode.cpp:71: parms ==> params, prams data/hyphy-2.5.23+dfsg/src/core/calcnode.cpp:75: parms ==> params, prams data/hyphy-2.5.23+dfsg/src/core/calcnode.cpp:88: parms ==> params, prams data/hyphy-2.5.23+dfsg/src/core/calcnode.cpp:98: parms ==> params, prams data/hyphy-2.5.23+dfsg/src/core/calcnode.cpp:105: parms ==> params, prams data/hyphy-2.5.23+dfsg/src/core/category.cpp:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/category.cpp:74: parms ==> params, prams data/hyphy-2.5.23+dfsg/src/core/category.cpp:81: parms ==> params, prams data/hyphy-2.5.23+dfsg/src/core/category.cpp:180: dependance ==> dependence data/hyphy-2.5.23+dfsg/src/core/category.cpp:232: indepenent ==> independent data/hyphy-2.5.23+dfsg/src/core/category.cpp:478: dependance ==> dependence data/hyphy-2.5.23+dfsg/src/core/category.cpp:492: dependance ==> dependence data/hyphy-2.5.23+dfsg/src/core/category.cpp:583: hist ==> heist, his data/hyphy-2.5.23+dfsg/src/core/category.cpp:586: hist ==> heist, his data/hyphy-2.5.23+dfsg/src/core/category.cpp:595: hist ==> heist, his data/hyphy-2.5.23+dfsg/src/core/category.cpp:983: theV ==> the data/hyphy-2.5.23+dfsg/src/core/constant.cpp:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/constant.cpp:209: theV ==> the data/hyphy-2.5.23+dfsg/src/core/constant.cpp:211: theV ==> the data/hyphy-2.5.23+dfsg/src/core/constant.cpp:217: theV ==> the data/hyphy-2.5.23+dfsg/src/core/constant.cpp:257: ser ==> set data/hyphy-2.5.23+dfsg/src/core/constant.cpp:263: ser ==> set data/hyphy-2.5.23+dfsg/src/core/constant.cpp:273: ser ==> set data/hyphy-2.5.23+dfsg/src/core/constant.cpp:277: ser ==> set data/hyphy-2.5.23+dfsg/src/core/dataset.cpp:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/dataset.cpp:533: represntation ==> representation data/hyphy-2.5.23+dfsg/src/core/dataset.cpp:1183: aNumber ==> a number data/hyphy-2.5.23+dfsg/src/core/dataset.cpp:1185: aNumber ==> a number data/hyphy-2.5.23+dfsg/src/core/dataset.cpp:1191: aNumber ==> a number data/hyphy-2.5.23+dfsg/src/core/dataset.cpp:1397: upTo ==> up to data/hyphy-2.5.23+dfsg/src/core/dataset.cpp:1398: upTo ==> up to data/hyphy-2.5.23+dfsg/src/core/dataset.cpp:1401: upTo ==> up to data/hyphy-2.5.23+dfsg/src/core/dataset.cpp:1711: mimatched ==> mismatched data/hyphy-2.5.23+dfsg/src/core/dataset.cpp:1734: exisiting ==> existing data/hyphy-2.5.23+dfsg/src/core/dataset.cpp:1967: theS ==> this, these data/hyphy-2.5.23+dfsg/src/core/dataset.cpp:2016: theS ==> this, these data/hyphy-2.5.23+dfsg/src/core/dataset.cpp:2020: theS ==> this, these data/hyphy-2.5.23+dfsg/src/core/dataset.cpp:2291: theS ==> this, these data/hyphy-2.5.23+dfsg/src/core/dataset_filter.cpp:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/dataset_filter.cpp:452: startD ==> started data/hyphy-2.5.23+dfsg/src/core/dataset_filter.cpp:561: funcion ==> function data/hyphy-2.5.23+dfsg/src/core/dataset_filter.cpp:561: bacause ==> because data/hyphy-2.5.23+dfsg/src/core/dataset_filter.cpp:565: somthing ==> something data/hyphy-2.5.23+dfsg/src/core/dataset_filter.cpp:1005: upTo ==> up to data/hyphy-2.5.23+dfsg/src/core/dataset_filter.cpp:1006: upTo ==> up to data/hyphy-2.5.23+dfsg/src/core/dataset_filter.cpp:1534: convertion ==> conversion data/hyphy-2.5.23+dfsg/src/core/dataset_filter.cpp:1978: upTo ==> up to data/hyphy-2.5.23+dfsg/src/core/dataset_filter.cpp:1994: upTo ==> up to data/hyphy-2.5.23+dfsg/src/core/dataset_filter.cpp:1995: upTo ==> up to data/hyphy-2.5.23+dfsg/src/core/dataset_filter.cpp:1996: upTo ==> up to data/hyphy-2.5.23+dfsg/src/core/dataset_filter.cpp:2000: upTo ==> up to data/hyphy-2.5.23+dfsg/src/core/dataset_filter.cpp:2010: upTo ==> up to data/hyphy-2.5.23+dfsg/src/core/dataset_filter.cpp:2084: upTo ==> up to data/hyphy-2.5.23+dfsg/src/core/dataset_filter.cpp:2087: upTo ==> up to data/hyphy-2.5.23+dfsg/src/core/dataset_filter.cpp:2201: upTo ==> up to data/hyphy-2.5.23+dfsg/src/core/dataset_filter.cpp:2204: upTo ==> up to data/hyphy-2.5.23+dfsg/src/core/dataset_filter.cpp:2206: upTo ==> up to data/hyphy-2.5.23+dfsg/src/core/dataset_filter.cpp:2207: upTo ==> up to data/hyphy-2.5.23+dfsg/src/core/dataset_filter.cpp:2222: upTo ==> up to data/hyphy-2.5.23+dfsg/src/core/dataset_filter.cpp:2228: upTo ==> up to data/hyphy-2.5.23+dfsg/src/core/dataset_filter_numeric.cpp:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/dataset_filter_numeric.cpp:107: startD ==> started data/hyphy-2.5.23+dfsg/src/core/fisher_exact.cpp:131: Lenth ==> Length data/hyphy-2.5.23+dfsg/src/core/fisher_exact.cpp:378: ND ==> AND, 2ND data/hyphy-2.5.23+dfsg/src/core/fisher_exact.cpp:391: ND ==> AND, 2ND data/hyphy-2.5.23+dfsg/src/core/fisher_exact.cpp:397: nd ==> and, 2nd data/hyphy-2.5.23+dfsg/src/core/fisher_exact.cpp:416: nd ==> and, 2nd data/hyphy-2.5.23+dfsg/src/core/fisher_exact.cpp:420: nd ==> and, 2nd data/hyphy-2.5.23+dfsg/src/core/fisher_exact.cpp:436: nd ==> and, 2nd data/hyphy-2.5.23+dfsg/src/core/fisher_exact.cpp:439: nd ==> and, 2nd data/hyphy-2.5.23+dfsg/src/core/fisher_exact.cpp:450: nd ==> and, 2nd data/hyphy-2.5.23+dfsg/src/core/fisher_exact.cpp:462: nd ==> and, 2nd data/hyphy-2.5.23+dfsg/src/core/fisher_exact.cpp:466: nd ==> and, 2nd data/hyphy-2.5.23+dfsg/src/core/fisher_exact.cpp:466: nd ==> and, 2nd data/hyphy-2.5.23+dfsg/src/core/fisher_exact.cpp:470: nd ==> and, 2nd data/hyphy-2.5.23+dfsg/src/core/fisher_exact.cpp:470: nd ==> and, 2nd data/hyphy-2.5.23+dfsg/src/core/fisher_exact.cpp:475: nd ==> and, 2nd data/hyphy-2.5.23+dfsg/src/core/fisher_exact.cpp:484: nd ==> and, 2nd data/hyphy-2.5.23+dfsg/src/core/fisher_exact.cpp:522: numebers ==> numbers data/hyphy-2.5.23+dfsg/src/core/fisher_exact.cpp:735: mutlipliers ==> multipliers data/hyphy-2.5.23+dfsg/src/core/fisher_exact.cpp:1225: IST ==> IS, IT, ITS, IT'S, SIT, LIST data/hyphy-2.5.23+dfsg/src/core/fisher_exact.cpp:1246: IST ==> IS, IT, ITS, IT'S, SIT, LIST data/hyphy-2.5.23+dfsg/src/core/fisher_exact.cpp:1254: ist ==> is, it, its, it's, sit, list data/hyphy-2.5.23+dfsg/src/core/fisher_exact.cpp:1300: ist ==> is, it, its, it's, sit, list data/hyphy-2.5.23+dfsg/src/core/fisher_exact.cpp:1549: ist ==> is, it, its, it's, sit, list data/hyphy-2.5.23+dfsg/src/core/fisher_exact.cpp:1551: ist ==> is, it, its, it's, sit, list data/hyphy-2.5.23+dfsg/src/core/fisher_exact.cpp:1561: ist ==> is, it, its, it's, sit, list data/hyphy-2.5.23+dfsg/src/core/fisher_exact.cpp:1563: ist ==> is, it, its, it's, sit, list data/hyphy-2.5.23+dfsg/src/core/fisher_exact.cpp:1575: ist ==> is, it, its, it's, sit, list data/hyphy-2.5.23+dfsg/src/core/fisher_exact.cpp:1595: ist ==> is, it, its, it's, sit, list data/hyphy-2.5.23+dfsg/src/core/fisher_exact.cpp:1596: ist ==> is, it, its, it's, sit, list data/hyphy-2.5.23+dfsg/src/core/fisher_exact.cpp:1838: multiplers ==> multipliers data/hyphy-2.5.23+dfsg/src/core/fisher_exact.cpp:2290: ALOG ==> ALONG data/hyphy-2.5.23+dfsg/src/core/formula.cpp:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/formula.cpp:1173: fatser ==> faster data/hyphy-2.5.23+dfsg/src/core/formula.cpp:1634: dependancies ==> dependencies data/hyphy-2.5.23+dfsg/src/core/formula.cpp:1692: theX ==> the, then data/hyphy-2.5.23+dfsg/src/core/formula.cpp:1693: algoruthm ==> algorithm data/hyphy-2.5.23+dfsg/src/core/formula.cpp:1717: theX ==> the, then data/hyphy-2.5.23+dfsg/src/core/formula.cpp:1718: theX ==> the, then data/hyphy-2.5.23+dfsg/src/core/formula.cpp:2706: theV ==> the data/hyphy-2.5.23+dfsg/src/core/formula_parsing_context.cpp:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/fstring.cpp:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/fstring.cpp:655: insenstive ==> insensitive data/hyphy-2.5.23+dfsg/src/core/fstring.cpp:774: insenstive ==> insensitive data/hyphy-2.5.23+dfsg/src/core/global_object_lists.cpp:11: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/global_things.cpp:11: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/hbl_env.cpp:11: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/hbl_env.cpp:109: defaut ==> default data/hyphy-2.5.23+dfsg/src/core/hbl_env.cpp:187: dependancies ==> dependencies data/hyphy-2.5.23+dfsg/src/core/hbl_env.cpp:189: whetehr ==> whether data/hyphy-2.5.23+dfsg/src/core/hbl_env.cpp:192: whetehr ==> whether data/hyphy-2.5.23+dfsg/src/core/hbl_env.cpp:210: returing ==> returning data/hyphy-2.5.23+dfsg/src/core/hbl_env.cpp:234: substitions ==> substitutions data/hyphy-2.5.23+dfsg/src/core/hbl_env.cpp:270: teh ==> the data/hyphy-2.5.23+dfsg/src/core/likefunc.cpp:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/likefunc.cpp:1394: upto ==> up to data/hyphy-2.5.23+dfsg/src/core/likefunc.cpp:1396: upto ==> up to data/hyphy-2.5.23+dfsg/src/core/likefunc.cpp:1396: upto ==> up to data/hyphy-2.5.23+dfsg/src/core/likefunc.cpp:1397: upto ==> up to data/hyphy-2.5.23+dfsg/src/core/likefunc.cpp:1494: dependant ==> dependent data/hyphy-2.5.23+dfsg/src/core/likefunc.cpp:1985: upto ==> up to data/hyphy-2.5.23+dfsg/src/core/likefunc.cpp:1986: upto ==> up to data/hyphy-2.5.23+dfsg/src/core/likefunc.cpp:2384: dependance ==> dependence data/hyphy-2.5.23+dfsg/src/core/likefunc.cpp:2389: dependance ==> dependence data/hyphy-2.5.23+dfsg/src/core/likefunc.cpp:2390: dependance ==> dependence data/hyphy-2.5.23+dfsg/src/core/likefunc.cpp:2397: dependance ==> dependence data/hyphy-2.5.23+dfsg/src/core/likefunc.cpp:2452: dependance ==> dependence data/hyphy-2.5.23+dfsg/src/core/likefunc.cpp:2461: dependance ==> dependence data/hyphy-2.5.23+dfsg/src/core/likefunc.cpp:2462: dependance ==> dependence data/hyphy-2.5.23+dfsg/src/core/likefunc.cpp:2473: dependance ==> dependence data/hyphy-2.5.23+dfsg/src/core/likefunc.cpp:2696: dependancies ==> dependencies data/hyphy-2.5.23+dfsg/src/core/likefunc.cpp:2698: dependancies ==> dependencies data/hyphy-2.5.23+dfsg/src/core/likefunc.cpp:2700: dependance ==> dependence data/hyphy-2.5.23+dfsg/src/core/likefunc.cpp:2715: dependancies ==> dependencies data/hyphy-2.5.23+dfsg/src/core/likefunc.cpp:2717: dependancies ==> dependencies data/hyphy-2.5.23+dfsg/src/core/likefunc.cpp:2726: dependancies ==> dependencies data/hyphy-2.5.23+dfsg/src/core/likefunc.cpp:2728: dependancies ==> dependencies data/hyphy-2.5.23+dfsg/src/core/likefunc.cpp:2736: dependancies ==> dependencies data/hyphy-2.5.23+dfsg/src/core/likefunc.cpp:2738: dependant ==> dependent data/hyphy-2.5.23+dfsg/src/core/likefunc.cpp:2750: dependancies ==> dependencies data/hyphy-2.5.23+dfsg/src/core/likefunc.cpp:2756: dependancies ==> dependencies data/hyphy-2.5.23+dfsg/src/core/likefunc.cpp:2760: dependancies ==> dependencies data/hyphy-2.5.23+dfsg/src/core/likefunc.cpp:2777: indepdenent ==> independent data/hyphy-2.5.23+dfsg/src/core/likefunc.cpp:2843: withing ==> within data/hyphy-2.5.23+dfsg/src/core/likefunc.cpp:2846: dependancies ==> dependencies data/hyphy-2.5.23+dfsg/src/core/likefunc.cpp:2857: dependancies ==> dependencies data/hyphy-2.5.23+dfsg/src/core/likefunc.cpp:2869: dependancies ==> dependencies data/hyphy-2.5.23+dfsg/src/core/likefunc.cpp:2870: dependancies ==> dependencies data/hyphy-2.5.23+dfsg/src/core/likefunc.cpp:2871: dependancies ==> dependencies data/hyphy-2.5.23+dfsg/src/core/likefunc.cpp:2874: dependancies ==> dependencies data/hyphy-2.5.23+dfsg/src/core/likefunc.cpp:2881: dependancies ==> dependencies data/hyphy-2.5.23+dfsg/src/core/likefunc.cpp:2881: dependancies ==> dependencies data/hyphy-2.5.23+dfsg/src/core/likefunc.cpp:3624: represenation ==> representation data/hyphy-2.5.23+dfsg/src/core/likefunc.cpp:5629: paremeter ==> parameter data/hyphy-2.5.23+dfsg/src/core/likefunc.cpp:6702: successfull ==> successful data/hyphy-2.5.23+dfsg/src/core/likefunc.cpp:6938: successfull ==> successful data/hyphy-2.5.23+dfsg/src/core/likefunc.cpp:7387: relected ==> reelected data/hyphy-2.5.23+dfsg/src/core/likefunc.cpp:7703: dependance ==> dependence data/hyphy-2.5.23+dfsg/src/core/likefunc.cpp:7713: theV ==> the data/hyphy-2.5.23+dfsg/src/core/likefunc.cpp:7715: theV ==> the data/hyphy-2.5.23+dfsg/src/core/likefunc.cpp:7716: theV ==> the data/hyphy-2.5.23+dfsg/src/core/likefunc.cpp:7932: theV ==> the data/hyphy-2.5.23+dfsg/src/core/likefunc.cpp:7934: theV ==> the data/hyphy-2.5.23+dfsg/src/core/likefunc.cpp:7935: theV ==> the data/hyphy-2.5.23+dfsg/src/core/likefunc.cpp:8387: dependancies ==> dependencies data/hyphy-2.5.23+dfsg/src/core/likefunc.cpp:9934: substituion ==> substitution data/hyphy-2.5.23+dfsg/src/core/likefunc.cpp:10869: hist ==> heist, his data/hyphy-2.5.23+dfsg/src/core/likefunc2.cpp:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/likefuncocl.cpp:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/list.cpp:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/list.cpp:69: contructor ==> constructor data/hyphy-2.5.23+dfsg/src/core/mathobj.cpp:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/matrix.cpp:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/matrix.cpp:148: 2st ==> 2nd data/hyphy-2.5.23+dfsg/src/core/matrix.cpp:302: nore ==> nor, more data/hyphy-2.5.23+dfsg/src/core/matrix.cpp:1364: Constrcts ==> Constructs, constricts data/hyphy-2.5.23+dfsg/src/core/matrix.cpp:1839: threshhold ==> threshold data/hyphy-2.5.23+dfsg/src/core/matrix.cpp:1846: threshhold ==> threshold data/hyphy-2.5.23+dfsg/src/core/matrix.cpp:1853: threshhold ==> threshold data/hyphy-2.5.23+dfsg/src/core/matrix.cpp:1860: threshhold ==> threshold data/hyphy-2.5.23+dfsg/src/core/matrix.cpp:3356: upto ==> up to data/hyphy-2.5.23+dfsg/src/core/matrix.cpp:3369: upto ==> up to data/hyphy-2.5.23+dfsg/src/core/matrix.cpp:3380: upto ==> up to data/hyphy-2.5.23+dfsg/src/core/matrix.cpp:3396: upto ==> up to data/hyphy-2.5.23+dfsg/src/core/matrix.cpp:3404: upto ==> up to data/hyphy-2.5.23+dfsg/src/core/matrix.cpp:3413: upto ==> up to data/hyphy-2.5.23+dfsg/src/core/matrix.cpp:3417: upto ==> up to data/hyphy-2.5.23+dfsg/src/core/matrix.cpp:3965: desination ==> destination data/hyphy-2.5.23+dfsg/src/core/matrix.cpp:4579: multipled ==> multiplied data/hyphy-2.5.23+dfsg/src/core/matrix.cpp:4944: smalles ==> smallest data/hyphy-2.5.23+dfsg/src/core/matrix.cpp:5142: packe ==> packed, packet data/hyphy-2.5.23+dfsg/src/core/matrix.cpp:8088: theV ==> the data/hyphy-2.5.23+dfsg/src/core/matrix.cpp:8089: theV ==> the data/hyphy-2.5.23+dfsg/src/core/matrix.cpp:8616: upTo ==> up to data/hyphy-2.5.23+dfsg/src/core/matrix.cpp:8629: upTo ==> up to data/hyphy-2.5.23+dfsg/src/core/matrix.cpp:8630: upTo ==> up to data/hyphy-2.5.23+dfsg/src/core/matrix.cpp:8631: upTo ==> up to data/hyphy-2.5.23+dfsg/src/core/matrix.cpp:8652: upTo ==> up to data/hyphy-2.5.23+dfsg/src/core/matrix.cpp:9366: artifical ==> artificial data/hyphy-2.5.23+dfsg/src/core/nexus.cpp:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/nexus.cpp:438: upto ==> up to data/hyphy-2.5.23+dfsg/src/core/nexus.cpp:441: upto ==> up to data/hyphy-2.5.23+dfsg/src/core/nexus.cpp:446: upto ==> up to data/hyphy-2.5.23+dfsg/src/core/ntuplestorage.cpp:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/operation.cpp:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/operation.cpp:232: theS ==> this, these data/hyphy-2.5.23+dfsg/src/core/operation.cpp:234: theS ==> this, these data/hyphy-2.5.23+dfsg/src/core/operation.cpp:241: theS ==> this, these data/hyphy-2.5.23+dfsg/src/core/operation.cpp:241: theS ==> this, these data/hyphy-2.5.23+dfsg/src/core/operation.cpp:245: theS ==> this, these data/hyphy-2.5.23+dfsg/src/core/operation.cpp:248: theS ==> this, these data/hyphy-2.5.23+dfsg/src/core/operation.cpp:577: theV ==> the data/hyphy-2.5.23+dfsg/src/core/parser.cpp:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/parser.cpp:448: parms ==> params, prams data/hyphy-2.5.23+dfsg/src/core/parser.cpp:452: Indentify ==> Identify data/hyphy-2.5.23+dfsg/src/core/parser.cpp:453: dependend ==> dependent, depended data/hyphy-2.5.23+dfsg/src/core/parser.cpp:454: parms ==> params, prams data/hyphy-2.5.23+dfsg/src/core/parser.cpp:468: parms ==> params, prams data/hyphy-2.5.23+dfsg/src/core/parser.cpp:537: parms ==> params, prams data/hyphy-2.5.23+dfsg/src/core/parser.cpp:622: parms ==> params, prams data/hyphy-2.5.23+dfsg/src/core/parser.cpp:634: parms ==> params, prams data/hyphy-2.5.23+dfsg/src/core/parser.cpp:720: theV ==> the data/hyphy-2.5.23+dfsg/src/core/parser.cpp:721: theV ==> the data/hyphy-2.5.23+dfsg/src/core/parser.cpp:734: theV ==> the data/hyphy-2.5.23+dfsg/src/core/parser.cpp:735: theV ==> the data/hyphy-2.5.23+dfsg/src/core/parser.cpp:752: theV ==> the data/hyphy-2.5.23+dfsg/src/core/parser.cpp:787: theV ==> the data/hyphy-2.5.23+dfsg/src/core/parser.cpp:852: theV ==> the data/hyphy-2.5.23+dfsg/src/core/parser.cpp:857: theV ==> the data/hyphy-2.5.23+dfsg/src/core/parser.cpp:859: theV ==> the data/hyphy-2.5.23+dfsg/src/core/parser.cpp:1061: mimimum ==> minimum data/hyphy-2.5.23+dfsg/src/core/parser.cpp:1246: theV ==> the data/hyphy-2.5.23+dfsg/src/core/parser.cpp:1248: theV ==> the data/hyphy-2.5.23+dfsg/src/core/parser2.cpp:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/parser2.cpp:232: theV ==> the data/hyphy-2.5.23+dfsg/src/core/parser2.cpp:233: theV ==> the data/hyphy-2.5.23+dfsg/src/core/parser2.cpp:252: theV ==> the data/hyphy-2.5.23+dfsg/src/core/parser2.cpp:253: theV ==> the data/hyphy-2.5.23+dfsg/src/core/parser2.cpp:277: theV ==> the data/hyphy-2.5.23+dfsg/src/core/parser2.cpp:280: theV ==> the data/hyphy-2.5.23+dfsg/src/core/parser2.cpp:283: theV ==> the data/hyphy-2.5.23+dfsg/src/core/parser2.cpp:284: theV ==> the data/hyphy-2.5.23+dfsg/src/core/parser2.cpp:554: theV ==> the data/hyphy-2.5.23+dfsg/src/core/parser2.cpp:578: theV ==> the data/hyphy-2.5.23+dfsg/src/core/parser2.cpp:642: expresion ==> expression data/hyphy-2.5.23+dfsg/src/core/parser2.cpp:684: upto ==> up to data/hyphy-2.5.23+dfsg/src/core/parser2.cpp:685: upto ==> up to data/hyphy-2.5.23+dfsg/src/core/parser2.cpp:686: upto ==> up to data/hyphy-2.5.23+dfsg/src/core/parser2.cpp:1436: refrence ==> reference data/hyphy-2.5.23+dfsg/src/core/parser2.cpp:1803: dependancies ==> dependencies data/hyphy-2.5.23+dfsg/src/core/polynoml.cpp:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/polynoml.cpp:933: theV ==> the data/hyphy-2.5.23+dfsg/src/core/polynoml.cpp:1666: compRes ==> compress, compares data/hyphy-2.5.23+dfsg/src/core/polynoml.cpp:1776: compRes ==> compress, compares data/hyphy-2.5.23+dfsg/src/core/polynoml.cpp:1802: compRes ==> compress, compares data/hyphy-2.5.23+dfsg/src/core/polynoml.cpp:1807: compRes ==> compress, compares data/hyphy-2.5.23+dfsg/src/core/polynoml.cpp:1810: compRes ==> compress, compares data/hyphy-2.5.23+dfsg/src/core/polynoml.cpp:1812: compRes ==> compress, compares data/hyphy-2.5.23+dfsg/src/core/polynoml.cpp:1830: compRes ==> compress, compares data/hyphy-2.5.23+dfsg/src/core/polynoml.cpp:1884: compRes ==> compress, compares data/hyphy-2.5.23+dfsg/src/core/polynoml.cpp:1885: compRes ==> compress, compares data/hyphy-2.5.23+dfsg/src/core/polynoml.cpp:1905: compRes ==> compress, compares data/hyphy-2.5.23+dfsg/src/core/simplelist.cpp:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/simplelist.cpp:116: contructor ==> constructor data/hyphy-2.5.23+dfsg/src/core/simplelist.cpp:125: upto ==> up to data/hyphy-2.5.23+dfsg/src/core/simplelist.cpp:126: upto ==> up to data/hyphy-2.5.23+dfsg/src/core/simplelist.cpp:127: upto ==> up to data/hyphy-2.5.23+dfsg/src/core/simplelist.cpp:490: theV ==> the data/hyphy-2.5.23+dfsg/src/core/simplelist.cpp:491: theV ==> the data/hyphy-2.5.23+dfsg/src/core/site.cpp:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/stack.cpp:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/string_buffer.cpp:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/string_file_wrapper.cpp:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/strings.cpp:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/time_difference.cpp:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/time_difference.cpp:68: numer ==> number data/hyphy-2.5.23+dfsg/src/core/topology.cpp:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/topology.cpp:113: parms ==> params, prams data/hyphy-2.5.23+dfsg/src/core/topology.cpp:119: parms ==> params, prams data/hyphy-2.5.23+dfsg/src/core/topology.cpp:280: parms ==> params, prams data/hyphy-2.5.23+dfsg/src/core/topology.cpp:347: parms ==> params, prams data/hyphy-2.5.23+dfsg/src/core/topology.cpp:349: parms ==> params, prams data/hyphy-2.5.23+dfsg/src/core/topology.cpp:453: parms ==> params, prams data/hyphy-2.5.23+dfsg/src/core/topology.cpp:458: parms ==> params, prams data/hyphy-2.5.23+dfsg/src/core/topology.cpp:464: parms ==> params, prams data/hyphy-2.5.23+dfsg/src/core/topology.cpp:468: parms ==> params, prams data/hyphy-2.5.23+dfsg/src/core/topology.cpp:476: parms ==> params, prams data/hyphy-2.5.23+dfsg/src/core/topology.cpp:480: parms ==> params, prams data/hyphy-2.5.23+dfsg/src/core/topology.cpp:491: parms ==> params, prams data/hyphy-2.5.23+dfsg/src/core/topology.cpp:493: parms ==> params, prams data/hyphy-2.5.23+dfsg/src/core/topology.cpp:499: parms ==> params, prams data/hyphy-2.5.23+dfsg/src/core/topology.cpp:503: parms ==> params, prams data/hyphy-2.5.23+dfsg/src/core/topology.cpp:518: parms ==> params, prams data/hyphy-2.5.23+dfsg/src/core/topology.cpp:522: parms ==> params, prams data/hyphy-2.5.23+dfsg/src/core/topology.cpp:536: parms ==> params, prams data/hyphy-2.5.23+dfsg/src/core/topology.cpp:538: parms ==> params, prams data/hyphy-2.5.23+dfsg/src/core/topology.cpp:538: parms ==> params, prams data/hyphy-2.5.23+dfsg/src/core/topology.cpp:2929: compRes ==> compress, compares data/hyphy-2.5.23+dfsg/src/core/topology.cpp:2944: compRes ==> compress, compares data/hyphy-2.5.23+dfsg/src/core/topology.cpp:2945: compRes ==> compress, compares data/hyphy-2.5.23+dfsg/src/core/topology.cpp:2947: compRes ==> compress, compares data/hyphy-2.5.23+dfsg/src/core/topology.cpp:2993: dependancies ==> dependencies data/hyphy-2.5.23+dfsg/src/core/topology.cpp:3000: dependancies ==> dependencies data/hyphy-2.5.23+dfsg/src/core/topology.cpp:3001: dependancies ==> dependencies data/hyphy-2.5.23+dfsg/src/core/topology.cpp:3003: dependancies ==> dependencies data/hyphy-2.5.23+dfsg/src/core/topology.cpp:3009: dependancies ==> dependencies data/hyphy-2.5.23+dfsg/src/core/topology.cpp:3018: dependancies ==> dependencies data/hyphy-2.5.23+dfsg/src/core/topology.cpp:3019: dependancies ==> dependencies data/hyphy-2.5.23+dfsg/src/core/topology.cpp:3030: dependancies ==> dependencies data/hyphy-2.5.23+dfsg/src/core/topology.cpp:3033: dependancies ==> dependencies data/hyphy-2.5.23+dfsg/src/core/topology.cpp:3035: dependancies ==> dependencies data/hyphy-2.5.23+dfsg/src/core/topology.cpp:3038: dependancies ==> dependencies data/hyphy-2.5.23+dfsg/src/core/topology.cpp:3258: compRes ==> compress, compares data/hyphy-2.5.23+dfsg/src/core/topology.cpp:3271: compRes ==> compress, compares data/hyphy-2.5.23+dfsg/src/core/topology.cpp:3272: compRes ==> compress, compares data/hyphy-2.5.23+dfsg/src/core/topology.cpp:3274: compRes ==> compress, compares data/hyphy-2.5.23+dfsg/src/core/topology.cpp:3685: traveral ==> traversal data/hyphy-2.5.23+dfsg/src/core/topology.cpp:3845: compRes ==> compress, compares data/hyphy-2.5.23+dfsg/src/core/topology.cpp:3859: compRes ==> compress, compares data/hyphy-2.5.23+dfsg/src/core/topology.cpp:3860: compRes ==> compress, compares data/hyphy-2.5.23+dfsg/src/core/topology.cpp:3861: compRes ==> compress, compares data/hyphy-2.5.23+dfsg/src/core/topology.cpp:3868: compRes ==> compress, compares data/hyphy-2.5.23+dfsg/src/core/topology.cpp:3869: compRes ==> compress, compares data/hyphy-2.5.23+dfsg/src/core/topology.cpp:3870: compRes ==> compress, compares data/hyphy-2.5.23+dfsg/src/core/topology.cpp:3901: compRes ==> compress, compares data/hyphy-2.5.23+dfsg/src/core/topology.cpp:3902: compRes ==> compress, compares data/hyphy-2.5.23+dfsg/src/core/topology.cpp:3907: compRes ==> compress, compares data/hyphy-2.5.23+dfsg/src/core/translation_table.cpp:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/tree.cpp:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/tree.cpp:117: nd ==> and, 2nd data/hyphy-2.5.23+dfsg/src/core/tree.cpp:222: parms ==> params, prams data/hyphy-2.5.23+dfsg/src/core/tree.cpp:227: parms ==> params, prams data/hyphy-2.5.23+dfsg/src/core/tree.cpp:517: nodel ==> model, nodal data/hyphy-2.5.23+dfsg/src/core/tree.cpp:844: reslove ==> resolve data/hyphy-2.5.23+dfsg/src/core/tree_evaluator.cpp:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/tree_iterator.cpp:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/trie.cpp:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/trie.cpp:408: alph ==> alpha data/hyphy-2.5.23+dfsg/src/core/trie.cpp:428: alph ==> alpha data/hyphy-2.5.23+dfsg/src/core/trie.cpp:453: alph ==> alpha data/hyphy-2.5.23+dfsg/src/core/trie.cpp:496: alph ==> alpha data/hyphy-2.5.23+dfsg/src/core/trie.cpp:497: alph ==> alpha data/hyphy-2.5.23+dfsg/src/core/trie_iterator.cpp:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/trie_iterator.cpp:116: alph ==> alpha data/hyphy-2.5.23+dfsg/src/core/trie_iterator.cpp:117: alph ==> alpha data/hyphy-2.5.23+dfsg/src/core/variable.cpp:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/variable.cpp:347: hist ==> heist, his data/hyphy-2.5.23+dfsg/src/core/variable.cpp:350: hist ==> heist, his data/hyphy-2.5.23+dfsg/src/core/variable.cpp:366: hist ==> heist, his data/hyphy-2.5.23+dfsg/src/core/variable.cpp:712: theV ==> the data/hyphy-2.5.23+dfsg/src/core/variable.cpp:716: theV ==> the data/hyphy-2.5.23+dfsg/src/core/variablecontainer.cpp:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/variablecontainer.cpp:320: actuall ==> actually, actual data/hyphy-2.5.23+dfsg/src/core/vector.cpp:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/include/_hyExecutionContext.h:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/include/alignment.h:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/include/associative_list.h:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/include/associative_list.h:106: argumens ==> arguments data/hyphy-2.5.23+dfsg/src/core/include/avllist.h:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/include/avllistx.h:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/include/avllistx_iterator.h:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/include/avllistx_iterator.h:63: compiant ==> compliant data/hyphy-2.5.23+dfsg/src/core/include/avllistx_iterator.h:93: fo ==> of, for data/hyphy-2.5.23+dfsg/src/core/include/avllistxl.h:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/include/avllistxl_iterator.h:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/include/avllistxl_iterator.h:64: compiant ==> compliant data/hyphy-2.5.23+dfsg/src/core/include/avllistxl_iterator.h:94: fo ==> of, for data/hyphy-2.5.23+dfsg/src/core/include/baseobj.h:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/include/baseobj.h:122: retrun ==> return data/hyphy-2.5.23+dfsg/src/core/include/batchlan.h:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/include/batchlan.h:163: dependancies ==> dependencies data/hyphy-2.5.23+dfsg/src/core/include/batchlan.h:166: dependancies ==> dependencies data/hyphy-2.5.23+dfsg/src/core/include/batchlan.h:299: delimeter ==> delimiter data/hyphy-2.5.23+dfsg/src/core/include/batchlan.h:396: dependancies ==> dependencies data/hyphy-2.5.23+dfsg/src/core/include/calcnode copy.h:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/include/calcnode copy.h:210: corresponing ==> corresponding data/hyphy-2.5.23+dfsg/src/core/include/calcnode copy.h:492: agrument ==> argument data/hyphy-2.5.23+dfsg/src/core/include/calcnode copy.h:568: parms ==> params, prams data/hyphy-2.5.23+dfsg/src/core/include/calcnode copy.h:722: traveral ==> traversal data/hyphy-2.5.23+dfsg/src/core/include/calcnode.h:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/include/calcnode.h:136: corresponing ==> corresponding data/hyphy-2.5.23+dfsg/src/core/include/category.h:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/include/category.h:77: parms ==> params, prams data/hyphy-2.5.23+dfsg/src/core/include/classes.h:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/include/constant.h:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/include/dataset.h:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/include/dataset_filter.h:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/include/dataset_filter.h:330: speficy ==> specify data/hyphy-2.5.23+dfsg/src/core/include/dataset_filter_numeric.h:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/include/defines.h:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/include/defines.h:246: Lanuage ==> Language data/hyphy-2.5.23+dfsg/src/core/include/formula.h:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/include/formula.h:94: operatons ==> operations data/hyphy-2.5.23+dfsg/src/core/include/formula.h:96: operatons ==> operations data/hyphy-2.5.23+dfsg/src/core/include/formula.h:119: commend ==> comment, command data/hyphy-2.5.23+dfsg/src/core/include/formula.h:203: forumla ==> formula data/hyphy-2.5.23+dfsg/src/core/include/formula.h:229: inifinite ==> infinite data/hyphy-2.5.23+dfsg/src/core/include/formula.h:230: inifinite ==> infinite data/hyphy-2.5.23+dfsg/src/core/include/formula_parsing_context.h:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/include/fstring.h:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/include/function_templates.h:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/include/global_object_lists.h:11: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/include/global_things.h:11: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/include/global_things.h:142: stuctures ==> structures data/hyphy-2.5.23+dfsg/src/core/include/global_things.h:225: accoding ==> according data/hyphy-2.5.23+dfsg/src/core/include/hbl_env.h:11: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/include/hy_string_buffer.h:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/include/hy_strings.h:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/include/hy_strings.h:96: constuctor ==> constructor data/hyphy-2.5.23+dfsg/src/core/include/hy_strings.h:105: initalization ==> initialization data/hyphy-2.5.23+dfsg/src/core/include/hy_strings.h:123: interger ==> integer data/hyphy-2.5.23+dfsg/src/core/include/hy_strings.h:241: charcater ==> character data/hyphy-2.5.23+dfsg/src/core/include/hy_strings.h:274: desctructor ==> destructor data/hyphy-2.5.23+dfsg/src/core/include/hy_strings.h:402: emtpy ==> empty data/hyphy-2.5.23+dfsg/src/core/include/hy_strings.h:547: charcter ==> character data/hyphy-2.5.23+dfsg/src/core/include/hy_strings.h:664: beween ==> between data/hyphy-2.5.23+dfsg/src/core/include/hy_strings.h:702: impelementation ==> implementation data/hyphy-2.5.23+dfsg/src/core/include/hy_strings.h:712: impementation ==> implementation data/hyphy-2.5.23+dfsg/src/core/include/hy_strings.h:771: occurence ==> occurrence data/hyphy-2.5.23+dfsg/src/core/include/hy_strings.h:786: occurence ==> occurrence data/hyphy-2.5.23+dfsg/src/core/include/hy_strings.h:802: occurence ==> occurrence data/hyphy-2.5.23+dfsg/src/core/include/hy_strings.h:817: occurence ==> occurrence data/hyphy-2.5.23+dfsg/src/core/include/hy_strings.h:820: whioch ==> which data/hyphy-2.5.23+dfsg/src/core/include/hy_strings.h:832: occurence ==> occurrence data/hyphy-2.5.23+dfsg/src/core/include/hy_strings.h:835: modifed ==> modified data/hyphy-2.5.23+dfsg/src/core/include/hy_strings.h:845: occurences ==> occurrences data/hyphy-2.5.23+dfsg/src/core/include/hy_strings.h:1004: paranthesis ==> parenthesis data/hyphy-2.5.23+dfsg/src/core/include/hy_strings.h:1007: paranthesis ==> parenthesis data/hyphy-2.5.23+dfsg/src/core/include/hy_strings.h:1019: convered ==> converted, covered data/hyphy-2.5.23+dfsg/src/core/include/hy_strings.h:1020: explict ==> explicit data/hyphy-2.5.23+dfsg/src/core/include/hy_strings.h:1355: charcters ==> characters data/hyphy-2.5.23+dfsg/src/core/include/hy_types.h:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/include/likefunc.h:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/include/likefunc.h:159: indepenent ==> independent data/hyphy-2.5.23+dfsg/src/core/include/likefunc.h:176: indepenent ==> independent data/hyphy-2.5.23+dfsg/src/core/include/likefunc.h:181: indepdendent ==> independent data/hyphy-2.5.23+dfsg/src/core/include/likefunc.h:344: compuation ==> computation data/hyphy-2.5.23+dfsg/src/core/include/likefunc.h:583: partitons ==> partitions data/hyphy-2.5.23+dfsg/src/core/include/likefunc.h:621: paritition ==> partition data/hyphy-2.5.23+dfsg/src/core/include/likefunc.h:629: coordiante ==> coordinate data/hyphy-2.5.23+dfsg/src/core/include/list.h:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/include/list.h:84: contructor ==> constructor data/hyphy-2.5.23+dfsg/src/core/include/list.h:237: upTo ==> up to data/hyphy-2.5.23+dfsg/src/core/include/mathobj.h:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/include/matrix.h:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/include/matrix.h:103: caclulations ==> calculations data/hyphy-2.5.23+dfsg/src/core/include/matrix.h:235: coordiates ==> coordinates data/hyphy-2.5.23+dfsg/src/core/include/matrix.h:648: rountines ==> routines data/hyphy-2.5.23+dfsg/src/core/include/mypthread.h:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/include/ntuplestorage.h:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/include/operation.h:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/include/operation.h:100: commend ==> comment, command data/hyphy-2.5.23+dfsg/src/core/include/parser.h:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/include/parser.h:177: exeptions ==> exceptions data/hyphy-2.5.23+dfsg/src/core/include/polynoml.h:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/include/simplelist.h:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/include/simplelist.h:85: contructor ==> constructor data/hyphy-2.5.23+dfsg/src/core/include/simplelist.h:144: elemnt ==> element data/hyphy-2.5.23+dfsg/src/core/include/simplelist.h:284: entires ==> entries data/hyphy-2.5.23+dfsg/src/core/include/simplelist.h:552: Retrive ==> Retrieve data/hyphy-2.5.23+dfsg/src/core/include/site.h:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/include/stack.h:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/include/string_file_wrapper.h:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/include/time_difference.h:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/include/topology.h:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/include/topology.h:289: agrument ==> argument data/hyphy-2.5.23+dfsg/src/core/include/translation_table.h:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/include/tree.h:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/include/tree.h:90: parms ==> params, prams data/hyphy-2.5.23+dfsg/src/core/include/tree.h:216: traveral ==> traversal data/hyphy-2.5.23+dfsg/src/core/include/tree_iterator.h:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/include/trie.h:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/include/trie.h:168: teh ==> the data/hyphy-2.5.23+dfsg/src/core/include/trie.h:250: retrive ==> retrieve data/hyphy-2.5.23+dfsg/src/core/include/trie_iterator.h:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/include/trie_iterator.h:66: compiant ==> compliant data/hyphy-2.5.23+dfsg/src/core/include/trie_iterator.h:97: fo ==> of, for data/hyphy-2.5.23+dfsg/src/core/include/variable.h:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/include/variablecontainer.h:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/core/include/vector.h:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/lib/batchfiles.list:214: GARD ==> GUARD data/hyphy-2.5.23+dfsg/src/lib/Examples/Python/BasicHyPhy.py:32: exection ==> execution data/hyphy-2.5.23+dfsg/src/lib/Examples/Python/BasicHyPhy.py:49: retrive ==> retrieve data/hyphy-2.5.23+dfsg/src/lib/Examples/Python/BasicHyPhy.py:52: exection ==> execution data/hyphy-2.5.23+dfsg/src/lib/Examples/Python/BasicHyPhy.py:67: intergration ==> integration data/hyphy-2.5.23+dfsg/src/lib/link/THyPhy.cpp:19: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/lib/link/THyPhy.cpp:72: hanlder ==> handler data/hyphy-2.5.23+dfsg/src/lib/link/THyPhy.cpp:79: hanlder ==> handler data/hyphy-2.5.23+dfsg/src/lib/link/THyPhy.h:19: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/lib/link/THyPhy.h:61: agruments ==> arguments data/hyphy-2.5.23+dfsg/src/lib/link/THyPhy.h:228: reponsible ==> responsible data/hyphy-2.5.23+dfsg/src/lib/link/THyPhy.h:279: intreface ==> interface data/hyphy-2.5.23+dfsg/src/mains/unix.cpp:121: gard ==> guard data/hyphy-2.5.23+dfsg/src/mains/unix.cpp:121: GARD ==> GUARD data/hyphy-2.5.23+dfsg/src/new/bayesgraph.cpp:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/new/bayesgraph2.cpp:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/new/bgm.cpp:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/new/bgm.cpp:175: ser ==> set data/hyphy-2.5.23+dfsg/src/new/bgm.cpp:180: ser ==> set data/hyphy-2.5.23+dfsg/src/new/bgm.cpp:183: ser ==> set data/hyphy-2.5.23+dfsg/src/new/bgm.cpp:186: ser ==> set data/hyphy-2.5.23+dfsg/src/new/bgm2.cpp:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/new/scfg.cpp:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/new/scfg.cpp:771: offest ==> offset data/hyphy-2.5.23+dfsg/src/new/scfg.cpp:1309: numer ==> number data/hyphy-2.5.23+dfsg/src/new/scfg.cpp:1318: numer ==> number data/hyphy-2.5.23+dfsg/src/new/scfg.cpp:1322: numer ==> number data/hyphy-2.5.23+dfsg/src/new/scfg.cpp:1328: numer ==> number data/hyphy-2.5.23+dfsg/src/new/scfg.cpp:1339: numer ==> number data/hyphy-2.5.23+dfsg/src/new/scfg.cpp:1377: numer ==> number data/hyphy-2.5.23+dfsg/src/new/scfg.cpp:1386: numer ==> number data/hyphy-2.5.23+dfsg/src/new/scfg.cpp:1390: numer ==> number data/hyphy-2.5.23+dfsg/src/new/include/bgm.h:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/new/include/scfg.h:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/new/include/scfg.h:228: enought ==> enough data/hyphy-2.5.23+dfsg/src/new/include/scfg.h:228: accomodate ==> accommodate data/hyphy-2.5.23+dfsg/src/ocl/opencl_kernels.cl:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/src/utils/hyphyunixutils.cpp:12: Hepler ==> Helper data/hyphy-2.5.23+dfsg/tests/data/flavNS5.nex:45: TBE ==> THE data/hyphy-2.5.23+dfsg/tests/hbltests/UnitTests/HBLCommands/Add.bf:27: elemet ==> element data/hyphy-2.5.23+dfsg/tests/hbltests/UnitTests/HBLCommands/Ampersand.bf:32: devined ==> defined data/hyphy-2.5.23+dfsg/tests/hbltests/UnitTests/HBLCommands/Beta.bf:28: acording ==> according data/hyphy-2.5.23+dfsg/tests/hbltests/UnitTests/HBLCommands/Beta.bf:32: percision ==> precision data/hyphy-2.5.23+dfsg/tests/hbltests/UnitTests/HBLCommands/Branchcount.bf:20: largeT ==> larger, largest, target data/hyphy-2.5.23+dfsg/tests/hbltests/UnitTests/HBLCommands/Branchcount.bf:27: largeT ==> larger, largest, target data/hyphy-2.5.23+dfsg/tests/hbltests/UnitTests/HBLCommands/Branchcount.bf:33: largeT ==> larger, largest, target data/hyphy-2.5.23+dfsg/tests/hbltests/UnitTests/HBLCommands/CChi2.bf:23: doesnt ==> doesn't, does not data/hyphy-2.5.23+dfsg/tests/hbltests/UnitTests/HBLCommands/Continue.bf:60: statment ==> statement data/hyphy-2.5.23+dfsg/tests/hbltests/UnitTests/HBLCommands/Differentiate.bf:30: Unparseable ==> Unparsable data/hyphy-2.5.23+dfsg/tests/hbltests/UnitTests/HBLCommands/Differentiate.bf:31: Unparseable ==> Unparsable data/hyphy-2.5.23+dfsg/tests/hbltests/UnitTests/HBLCommands/Divide.bf:19: divisable ==> divisible data/hyphy-2.5.23+dfsg/tests/hbltests/UnitTests/HBLCommands/Divide.bf:20: divisable ==> divisible data/hyphy-2.5.23+dfsg/tests/hbltests/UnitTests/HBLCommands/Divide.bf:25: substitue ==> substitute data/hyphy-2.5.23+dfsg/tests/hbltests/UnitTests/HBLCommands/Divide.bf:27: taht ==> that data/hyphy-2.5.23+dfsg/tests/hbltests/UnitTests/HBLCommands/Divide.bf:31: multipe ==> multiple data/hyphy-2.5.23+dfsg/tests/hbltests/UnitTests/HBLCommands/Divide.bf:52: differnet ==> different data/hyphy-2.5.23+dfsg/tests/hbltests/UnitTests/HBLCommands/Dollarsign.bf:20: corretly ==> correctly data/hyphy-2.5.23+dfsg/tests/hbltests/UnitTests/HBLCommands/Dollarsign.bf:20: divion ==> division data/hyphy-2.5.23+dfsg/tests/hbltests/UnitTests/HBLCommands/DoubleAmpersand.bf:63: commad ==> command data/hyphy-2.5.23+dfsg/tests/hbltests/UnitTests/HBLCommands/Erf.bf:46: stirng ==> string data/hyphy-2.5.23+dfsg/tests/hbltests/UnitTests/HBLCommands/ExclamationPoint.bf:30: sould ==> could, should, sold data/hyphy-2.5.23+dfsg/tests/hbltests/UnitTests/HBLCommands/ExclamationPointEquals.bf:26: correclty ==> correctly data/hyphy-2.5.23+dfsg/tests/hbltests/UnitTests/HBLCommands/Exp.bf:39: DOESNT ==> DOESN'T, DOES NOT data/hyphy-2.5.23+dfsg/tests/hbltests/UnitTests/HBLCommands/Ffunction.bf:39: refernce ==> reference data/hyphy-2.5.23+dfsg/tests/hbltests/UnitTests/HBLCommands/Format.bf:71: Formating ==> Formatting data/hyphy-2.5.23+dfsg/tests/hbltests/UnitTests/HBLCommands/Function.bf:49: refernce ==> reference data/hyphy-2.5.23+dfsg/tests/hbltests/UnitTests/HBLCommands/Greaterthan.bf:20: expresion ==> expression data/hyphy-2.5.23+dfsg/tests/hbltests/UnitTests/HBLCommands/Greaterthanorequalto.bf:20: expresion ==> expression data/hyphy-2.5.23+dfsg/tests/hbltests/UnitTests/HBLCommands/Integrate.bf:28: failes ==> fails data/hyphy-2.5.23+dfsg/tests/hbltests/UnitTests/HBLCommands/Lessthan.bf:20: expresion ==> expression data/hyphy-2.5.23+dfsg/tests/hbltests/UnitTests/HBLCommands/Lessthan.bf:58: addig ==> adding data/hyphy-2.5.23+dfsg/tests/hbltests/UnitTests/HBLCommands/Lessthanorequalto.bf:20: expresion ==> expression data/hyphy-2.5.23+dfsg/tests/hbltests/UnitTests/HBLCommands/MAccess_bracket.bf:51: acess ==> access data/hyphy-2.5.23+dfsg/tests/hbltests/UnitTests/HBLCommands/MAccess_bracket.bf:60: acess ==> access data/hyphy-2.5.23+dfsg/tests/hbltests/UnitTests/HBLCommands/MAccess_bracket.bf:65: accessable ==> accessible data/hyphy-2.5.23+dfsg/tests/hbltests/UnitTests/HBLCommands/MAccess_bracket.bf:66: parentesis ==> parentheses, parenthesis data/hyphy-2.5.23+dfsg/tests/hbltests/UnitTests/HBLCommands/Min.bf:47: folowing ==> following data/hyphy-2.5.23+dfsg/tests/hbltests/UnitTests/HBLCommands/Percentsign.bf:21: corretly ==> correctly data/hyphy-2.5.23+dfsg/tests/hbltests/UnitTests/HBLCommands/Percentsign.bf:36: differnet ==> different data/hyphy-2.5.23+dfsg/tests/hbltests/UnitTests/HBLCommands/Percentsign.bf:38: completly ==> completely data/hyphy-2.5.23+dfsg/tests/hbltests/UnitTests/HBLCommands/Random.bf:25: extremly ==> extremely data/hyphy-2.5.23+dfsg/tests/hbltests/UnitTests/HBLCommands/Random.bf:82: agrument ==> argument data/hyphy-2.5.23+dfsg/tests/hbltests/UnitTests/HBLCommands/Random.bf:83: agrument ==> argument data/hyphy-2.5.23+dfsg/tests/hbltests/UnitTests/HBLCommands/ReplicateConstraint.bf:116: contstraint ==> constraint data/hyphy-2.5.23+dfsg/tests/hbltests/UnitTests/HBLCommands/Return.bf:41: statment ==> statement data/hyphy-2.5.23+dfsg/tests/hbltests/UnitTests/HBLCommands/Return.bf:43: statment ==> statement data/hyphy-2.5.23+dfsg/tests/hbltests/UnitTests/HBLCommands/Return.bf:44: statment ==> statement data/hyphy-2.5.23+dfsg/tests/hbltests/UnitTests/HBLCommands/Simplify.bf:19: dictonary ==> dictionary data/hyphy-2.5.23+dfsg/tests/hbltests/UnitTests/HBLCommands/Simplify.bf:23: dictonary ==> dictionary data/hyphy-2.5.23+dfsg/tests/hbltests/UnitTests/HBLCommands/SimulateDataSet.bf:40: dimmensions ==> dimensions data/hyphy-2.5.23+dfsg/tests/hbltests/UnitTests/HBLCommands/SimulateDataSet.bf:51: orignal ==> original data/hyphy-2.5.23+dfsg/tests/hbltests/UnitTests/HBLCommands/Subtract.bf:25: elemet ==> element data/hyphy-2.5.23+dfsg/tests/hbltests/UnitTests/HBLCommands/Topology.bf:25: handeled ==> handled, handheld data/hyphy-2.5.23+dfsg/tests/hbltests/UnitTests/HBLCommands/Topology.bf:47: emtpy ==> empty data/hyphy-2.5.23+dfsg/tests/hbltests/UnitTests/HBLCommands/Topology.bf:47: wheras ==> whereas data/hyphy-2.5.23+dfsg/tests/hbltests/UnitTests/HBLCommands/Topology.bf:49: constuct ==> construct data/hyphy-2.5.23+dfsg/tests/hbltests/UnitTests/HBLCommands/Tree.bf:21: handeled ==> handled, handheld data/hyphy-2.5.23+dfsg/tests/hbltests/UnitTests/HBLCommands/Tree.bf:44: consrtuct ==> construct data/hyphy-2.5.23+dfsg/tests/hbltests/UnitTests/HBLCommands/break.bf:39: statment ==> statement data/hyphy-2.5.23+dfsg/tests/hbltests/UnitTests/HBLCommands/break.bf:53: statment ==> statement data/hyphy-2.5.23+dfsg/tests/hbltests/UnitTests/HBLCommands/lfunction.bf:47: refernce ==> reference data/hyphy-2.5.23+dfsg/tests/hbltests/UnitTests/HBLCommands/res/SCFG/SCFG.ibf:37: varaibles ==> variables data/hyphy-2.5.23+dfsg/tests/hbltests/libv3/GARD.wbf:4: GARD ==> GUARD data/hyphy-2.5.23+dfsg/tests/hbltests/libv3/GARD.wbf:11: GARD ==> GUARD data/hyphy-2.5.23+dfsg/tests/hbltests/libv3/GARD.wbf:12: gard ==> guard data/hyphy-2.5.23+dfsg/tests/hbltests/libv3/GARD.wbf:14: gard ==> guard data/hyphy-2.5.23+dfsg/tests/hbltests/libv3/GARD.wbf:15: gard ==> guard data/hyphy-2.5.23+dfsg/debian/changelog:214: unneded ==> unneeded data/hyphy-2.5.23+dfsg/debian/Python/BasicHyPhy3.py:33: exection ==> execution data/hyphy-2.5.23+dfsg/debian/Python/BasicHyPhy3.py:50: retrive ==> retrieve data/hyphy-2.5.23+dfsg/debian/Python/BasicHyPhy3.py:53: exection ==> execution data/hyphy-2.5.23+dfsg/debian/Python/BasicHyPhy3.py:68: intergration ==> integration data/hyphy-2.5.23+dfsg/debian/manuals/HYPHYMPI.1:110: Peform ==> Perform data/hyphy-2.5.23+dfsg/debian/manuals/HYPHYMPI.1:125: som ==> some data/hyphy-2.5.23+dfsg/debian/manuals/HYPHYMPI.1:157: adn ==> and data/hyphy-2.5.23+dfsg/debian/manuals/HYPHYMPI.1:203: optinally ==> optionally data/hyphy-2.5.23+dfsg/debian/manuals/HYPHYMPI.1:286: gard ==> guard data/hyphy-2.5.23+dfsg/debian/manuals/HYPHYMPI.1:287: GARD ==> GUARD data/hyphy-2.5.23+dfsg/debian/manuals/HYPHYMPI.1:287: GARD ==> GUARD data/hyphy-2.5.23+dfsg/debian/manuals/hyphy.1:110: Peform ==> Perform data/hyphy-2.5.23+dfsg/debian/manuals/hyphy.1:125: som ==> some data/hyphy-2.5.23+dfsg/debian/manuals/hyphy.1:157: adn ==> and data/hyphy-2.5.23+dfsg/debian/manuals/hyphy.1:203: optinally ==> optionally data/hyphy-2.5.23+dfsg/debian/manuals/hyphy.1:286: gard ==> guard data/hyphy-2.5.23+dfsg/debian/manuals/hyphy.1:287: GARD ==> GUARD data/hyphy-2.5.23+dfsg/debian/manuals/hyphy.1:287: GARD ==> GUARD data/hyphy-2.5.23+dfsg/.pc/use_debian_sqlite.patch/CMakeLists.txt:590: GARD ==> GUARD data/hyphy-2.5.23+dfsg/.pc/use_debian_sqlite.patch/CMakeLists.txt:590: GARD ==> GUARD data/hyphy-2.5.23+dfsg/.pc/rm_arch_specific_flags.patch/CMakeLists.txt:612: GARD ==> GUARD data/hyphy-2.5.23+dfsg/.pc/rm_arch_specific_flags.patch/CMakeLists.txt:612: GARD ==> GUARD