data/igv-2.6.3+dfsg/docs/web/downloads.html:9: applcation ==> application
data/igv-2.6.3+dfsg/docs/web/releaseNotes.html:158: comman ==> command, common
data/igv-2.6.3+dfsg/docs/web/releaseNotes.html:263: assoicated ==> associated
data/igv-2.6.3+dfsg/docs/web/releaseNotes.html:681: neccessary ==> necessary
data/igv-2.6.3+dfsg/docs/web/releaseNotes.html:881: segmenets ==> segments
data/igv-2.6.3+dfsg/genomes/db/ce6/ce6_annotations.xml:10: Psuedo ==> Pseudo
data/igv-2.6.3+dfsg/src/main/java/org/apache/tomcat/util/HttpDate.java:83: dependant ==> dependent
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/DirectoryManager.java:103: remvoe ==> remove
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/Globals.java:49: resoure ==> resource
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/batch/CommandExecutor.java:190: UNKOWN ==> UNKNOWN
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/bbfile/BBFileHeader.java:80: sumary ==> summary
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/bbfile/BBZoomLevelHeader.java:62: summerized ==> summarized
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/bbfile/BBZoomLevelHeader.java:154: fle ==> file
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/bbfile/BPTreeHeader.java:64: charcter ==> character
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/bbfile/BPTreeNodeItem.java:41: alpha-numeric ==> alphanumeric
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/bbfile/BedFeature.java:44: fileds ==> fields
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/bbfile/BedFeature.java:47: fileds ==> fields
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/bbfile/BedFeature.java:56: seperated ==> separated
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/bbfile/BedFeature.java:56: valuse ==> values, value
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/bbfile/BedFeature.java:58: seperated ==> separated
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/bbfile/BedFeature.java:59: seperated ==> separated
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/bbfile/BedFeature.java:61: fileds ==> fields
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/bbfile/BigWigSectionHeader.java:44: accomodated ==> accommodated
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/bedpe/BedPEParser.java:33: overriden ==> overridden
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/bedpe/InteractionTrack.java:257: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/blast/Anchor.java:30: psuedo ==> pseudo
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/blast/Region.java:60: psuedo ==> pseudo
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/blast/Region.java:102: psuedo ==> pseudo
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/charts/ChartPanel.java:336: comapre ==> compare
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/charts/ScatterPlot.java:174: effecient ==> efficient
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/charts/ScatterPlotData.java:37: peformance ==> performance
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/charts/ScatterPlotData.java:38: considerd ==> considered
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/data/IGVDatasetParser.java:193: overriden ==> overridden
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/data/cufflinks/CufflinksTrack.java:70: symmetic ==> symmetric
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/data/expression/ExpressionDataset.java:59: colum ==> column
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/data/expression/ExpressionDataset.java:59: effecient ==> efficient
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/data/expression/ExpressionFileParser.java:88: effecient ==> efficient
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/data/expression/ExpressionFileParser.java:94: referes ==> refers, referees
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/data/expression/ExpressionFileParser.java:268: interruptable ==> interruptible
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/data/expression/GeneToLocusHelper.java:93: fiel ==> feel, field, file, phial
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/data/expression/GeneToLocusHelper.java:147: directrly ==> directly
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/data/seg/SegmentedAsciiDataSet.java:55: precense ==> presence
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/data/seg/SegmentedBinaryDataSet.java:48: precense ==> presence
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/feature/Chromosome.java:57: overriden ==> overridden
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/feature/FeatureUtils.java:103: whats ==> what's
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/feature/GisticFileParser.java:224: Unkown ==> Unknown
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/feature/Mutation.java:266: featre ==> feature
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/feature/SpliceJunctionFeature.java:206: overriden ==> overridden
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/feature/dranger/DRangerFeature.java:91: rearrangment ==> rearrangement
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/feature/genome/GenomeBuilderPane.java:292: uniqe ==> unique
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/feature/genome/GenomeImporter.java:131: neccessary ==> necessary
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/feature/genome/GenomeManager.java:235: readed ==> read, readd, readded
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/feature/genome/GenomeManager.java:483: avaliable ==> available
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/feature/genome/GenomeManager.java:1098: availble ==> available
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/feature/genome/SequenceWrapper.java:333: neccessary ==> necessary
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/feature/genome/fasta/FastaIndex.java:42: auther ==> author
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/feature/sprite/ClusterTrack.java:180: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/feature/tribble/CodecFactory.java:167: Eror ==> Error
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/feature/tribble/REPMaskCodec.java:124: Optimisitic ==> Optimistic
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/goby/GobyAlignment.java:4: Weill ==> Will
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/goby/GobyAlignment.java:86: Alignement ==> Alignment
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/goby/GobyAlignment.java:813: suppor ==> support
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/goby/GobyAlignment.java:821: suppor ==> support
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/goby/GobyAlignmentIterator.java:4: Weill ==> Will
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/goby/GobyAlignmentQueryReader.java:4: Weill ==> Will
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/goby/GobyCountArchiveDataSource.java:4: Weill ==> Will
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/google/GoogleUtils.java:117: sharable ==> shareable
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/google/OAuthUtils.java:179: paremeter ==> parameter
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/google/OAuthUtils.java:195: suppported ==> supported
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/gwas/GWASTrack.java:527: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/lists/GeneListManagerUI.java:77: withing ==> within
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/maf/MAFIndex.java:88: indeces ==> indices
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/maf/MultipleAlignmentTrack.java:306: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/maf/MultipleAlignmentTrack.java:329: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/maf/MultipleAlignmentTrack.java:330: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/maf/MultipleAlignmentTrack.java:335: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/methyl/CachingMethylSource.java:177: indeces ==> indices
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/prefs/IGVPreferences.java:721: pallete ==> palette
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/prefs/IGVPreferences.java:722: pallete ==> palette
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/prefs/IGVPreferences.java:723: pallete ==> palette
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/renderer/CytobandRenderer.java:143: prevEnd ==> prevent
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/renderer/CytobandRenderer.java:152: prevEnd ==> prevent
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/renderer/CytobandRenderer.java:154: prevEnd ==> prevent
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/renderer/IGVFeatureRenderer.java:121: neccessary ==> necessary
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/renderer/LineplotRenderer.java:120: neccessary ==> necessary
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/renderer/MappedColorScale.java:88: fo ==> of, for
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/renderer/SpliceJunctionRenderer.java:98: neccessary ==> necessary
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/renderer/XYPlotRenderer.java:342: frmo ==> from
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/AlignmentDataManager.java:458: positon ==> position, positron
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/AlignmentPacker.java:133: alignemnts ==> alignments
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/AlignmentPacker.java:322: Asssumes ==> Assumes
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/AlignmentRenderer.java:136: orienation ==> orientation
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/AlignmentRenderer.java:159: orienation ==> orientation
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/AlignmentRenderer.java:177: orienation ==> orientation
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/AlignmentRenderer.java:770: aligment ==> alignment
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/AlignmentRenderer.java:771: curren ==> current
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/AlignmentRenderer.java:1392: Maping ==> Mapping
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/AlignmentTrack.java:346: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/AlignmentTrack.java:348: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/AlignmentTrack.java:351: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/AlignmentTrack.java:358: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/AlignmentTrack.java:848: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/AlignmentTrack.java:861: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/AlignmentTrack.java:861: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/AlignmentTrack.java:864: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/AlignmentTrack.java:865: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/AlignmentTrack.java:876: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/AlignmentTrack.java:887: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/AlignmentTrack.java:1004: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/AlignmentTrack.java:1005: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/AlignmentTrack.java:1006: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/AlignmentTrack.java:1041: alignemnt ==> alignment
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/AlignmentTrack.java:1044: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/AlignmentTrack.java:1047: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/AlignmentTrack.java:1049: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/AlignmentTrack.java:1051: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/AlignmentTrack.java:1052: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/AlignmentTrack.java:1082: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/AlignmentTrack.java:1084: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/AlignmentTrack.java:1087: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/AlignmentTrack.java:1097: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/AlignmentTrack.java:1097: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/AlignmentTrack.java:1097: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/AlignmentTrack.java:1100: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/AlignmentTrack.java:1115: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/AlignmentTrack.java:1380: exlcusive ==> exclusive
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/AlignmentTrack.java:1649: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/AlignmentTrack.java:1650: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/AlignmentTrack.java:1651: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/AlignmentTrack.java:1877: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/AlignmentTrack.java:1879: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/AlignmentTrack.java:1882: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/AlignmentTrack.java:1892: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/AlignmentTrack.java:1916: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/AlignmentTrack.java:1919: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/AlignmentTrack.java:1921: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/AlignmentTrack.java:1925: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/AlignmentTrack.java:1933: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/AlignmentTrack.java:1936: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/AlignmentTrack.java:1938: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/AlignmentTrack.java:1960: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/AlignmentTrack.java:2105: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/AlignmentTrack.java:2110: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/AlignmentTrack.java:2128: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/AlignmentTrack.java:2133: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/AlignmentTrack.java:2154: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/AlignmentTrack.java:2159: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/AlignmentTrack.java:2256: pixelX ==> pixels, pixel
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/AlignmentTrack.java:2259: pixelX ==> pixels, pixel
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/CoverageTrack.java:761: effeciency ==> efficiency
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/CoverageTrack.java:777: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/CoverageTrack.java:782: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/CoverageTrack.java:791: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/CoverageTrack.java:799: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/CoverageTrack.java:802: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/CoverageTrack.java:803: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/CoverageTrack.java:803: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/CoverageTrack.java:803: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/CoverageTrack.java:803: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/CoverageTrack.java:803: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/SpliceJunctionTrack.java:145: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/SpliceJunctionTrack.java:160: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/SpliceJunctionTrack.java:308: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/SpliceJunctionTrack.java:309: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/lite/BAMAlignment.java:263: ba ==> by, be
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/lite/BAMAlignment.java:266: ba ==> by, be
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/lite/BAMAlignment.java:271: ba ==> by, be
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/lite/BAMIndex.java:52: ba ==> by, be
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/lite/BAMIndex.java:53: ba ==> by, be
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/lite/BAMIndex.java:63: ba ==> by, be
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/lite/BAMIndex.java:70: ba ==> by, be
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/lite/BAMIndex.java:75: ba ==> by, be
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/lite/BAMIndex.java:114: withing ==> within
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/lite/BAMIndex.java:268: psuedo ==> pseudo
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/lite/BAMReader.java:290: ba ==> by, be
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/lite/BAMReader.java:295: ba ==> by, be
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/lite/BAMReader.java:299: ba ==> by, be
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/lite/BAMReader.java:302: ba ==> by, be
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/lite/BAMReader.java:306: ba ==> by, be
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/lite/BAMReader.java:307: ba ==> by, be
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/lite/BAMReader.java:317: ba ==> by, be
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/lite/BAMReader.java:322: ba ==> by, be
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/lite/BAMReader.java:327: ba ==> by, be
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/lite/BAMReader.java:329: ba ==> by, be
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/lite/BAMReader.java:330: ba ==> by, be
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/lite/BAMReader.java:333: ba ==> by, be
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/lite/BAMReader.java:337: ba ==> by, be
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/lite/BAMReader.java:358: ba ==> by, be
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/lite/BAMReader.java:375: ba ==> by, be
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/lite/BAMReader.java:390: ba ==> by, be
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/lite/BAMReader.java:398: ba ==> by, be
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/lite/BAMReader.java:545: ba ==> by, be
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/lite/BAMReader.java:549: ba ==> by, be
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/lite/BAMReader.java:561: ba ==> by, be
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/lite/BAMReader.java:562: ba ==> by, be
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/lite/BAMReader.java:562: ba ==> by, be
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/lite/BAMReader.java:562: ba ==> by, be
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/lite/BAMReader.java:562: ba ==> by, be
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/reader/FeatureIndex.java:122: execption ==> exception
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/sam/reader/FeatureIndex.java:195: Unfortuantely ==> Unfortunately
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/session/IGVSessionReader.java:507: elments ==> elements
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/session/Session.java:494: substracted ==> subtracted
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/tdf/TDFReader.java:275: occured ==> occurred
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/tdf/TDFReader.java:312: occured ==> occurred
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/tdf/TDFReader.java:348: occured ==> occurred
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/tdf/TDFWriter.java:244: doese ==> does
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/tdf/notes.txt:52: NECCESSARY ==> NECESSARY
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/tdf/notes.txt:66: NECCESSARY ==> NECESSARY
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/tdf/notes.txt:70: NECCESSARY ==> NECESSARY
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/tools/IgvTools.java:1257: Estimage ==> Estimate
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/tools/IgvToolsGui.java:374: Overwite ==> Overwrite
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/tools/converters/GCTtoIGVConverter.java:177: effecient ==> efficient
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/tools/converters/MageTabToIGVConverter.java:175: effecient ==> efficient
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/tools/converters/MageTabToIGVConverter.java:189: indeces ==> indices
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/tools/parsers/CNParser.java:146: overriden ==> overridden
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/track/AbstractTrack.java:587: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/track/AbstractTrack.java:590: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/track/AbstractTrack.java:672: explicity ==> explicitly
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/track/AbstractTrack.java:834: Overriden ==> Overridden
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/track/AbstractTrack.java:900: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/track/AttributeManager.java:502: curently ==> currently
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/track/AttributeManager.java:525: identifers ==> identifiers
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/track/BlatTrack.java:106: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/track/BlatTrack.java:107: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/track/CNFreqTrack.java:162: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/track/FeatureTrack.java:105: collpased ==> collapsed
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/track/FeatureTrack.java:570: minum ==> minimum
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/track/FeatureTrack.java:585: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/track/FeatureTrack.java:587: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/track/FeatureTrack.java:613: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/track/FeatureTrack.java:628: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/track/FeatureTrack.java:646: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/track/FeatureTrack.java:647: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/track/FeatureTrack.java:648: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/track/FeatureTrack.java:672: Explicity ==> Explicitly
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/track/MergedTracks.java:288: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/track/MutationTrack.java:93: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/track/MutationTrack.java:94: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/track/SelectableFeatureTrack.java:57: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/track/SelectableFeatureTrack.java:58: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/track/SelectableFeatureTrack.java:59: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/track/SelectableFeatureTrack.java:69: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/track/SequenceTrack.java:335: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/track/Track.java:75: ot ==> to, of, or
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/track/Track.java:249: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/track/TrackGroup.java:244: neccessary ==> necessary
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/track/TrackLoader.java:493: specifing ==> specifying
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/track/TrackMenuItemBuilder.java:42: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/track/TrackMenuItemBuilder.java:46: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/track/TrackMenuUtils.java:91: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/track/TrackMenuUtils.java:106: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/track/TrackMenuUtils.java:117: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/track/TrackMenuUtils.java:119: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/track/TrackMenuUtils.java:122: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/track/TrackMenuUtils.java:136: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/track/TrackMenuUtils.java:178: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/track/TrackMenuUtils.java:456: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/track/TrackMenuUtils.java:464: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/track/TrackMenuUtils.java:466: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/track/TrackMenuUtils.java:474: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/track/TrackMenuUtils.java:480: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/track/TrackProperties.java:96: renderes ==> renders, renderers, renderer's
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/ui/AWTFrameTest.java:50: neccessary ==> necessary
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/ui/DefaultExceptionHandler.java:48: occured ==> occurred
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/ui/IGV.java:1339: tread ==> thread, treat
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/ui/IGV.java:1656: neccessary ==> necessary
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/ui/IGV.java:2215: overriden ==> overridden
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/ui/Main.java:174: neccessary ==> necessary
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/ui/Main.java:445: argments ==> arguments
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/ui/ResourceTree.java:525: decendants ==> descendants
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/ui/ResourceTree.java:626: matchs ==> matches
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/ui/TrackFilterPane.java:164: prefered ==> preferred
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/ui/action/FitDataToWindowMenuAction.java:60: neccessary ==> necessary
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/ui/action/LoadFromServerAction.java:257: neccessary ==> necessary
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/ui/color/ColorUtilities.java:351: pallete ==> palette
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/ui/color/ColorUtilities.java:356: pallete ==> palette
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/ui/commandbar/IGVCommandBar.java:303: neccessary ==> necessary
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/ui/legend/HeatmapLegendPanel.java:77: fo ==> of, for
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/ui/legend/HeatmapLegendPanel.java:111: fo ==> of, for
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/ui/panel/AttributePanel.java:330: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/ui/panel/AttributePanel.java:331: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/ui/panel/AttributePanel.java:340: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/ui/panel/AttributePanel.java:341: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/ui/panel/DataPanel.java:691: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/ui/panel/DataPanel.java:692: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/ui/panel/DataPanel.java:754: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/ui/panel/DataPanel.java:755: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/ui/panel/DataPanel.java:783: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/ui/panel/DataPanel.java:788: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/ui/panel/DataPanel.java:789: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/ui/panel/DataPanel.java:795: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/ui/panel/DataPanelLayout.java:112: pixelX ==> pixels, pixel
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/ui/panel/DataPanelLayout.java:122: pixelX ==> pixels, pixel
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/ui/panel/FrameManager.java:245: visibile ==> visible
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/ui/panel/MainPanel.java:334: visibile ==> visible
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/ui/panel/MainPanel.java:632: neccessary ==> necessary
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/ui/panel/PanelLayoutManager.java:57: pixelX ==> pixels, pixel
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/ui/panel/PanelLayoutManager.java:67: pixelX ==> pixels, pixel
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/ui/panel/ReferenceFrame.java:104: pixelX ==> pixels, pixel
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/ui/panel/ReferenceFrame.java:137: ovverride ==> override
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/ui/panel/ReferenceFrame.java:149: pixelX ==> pixels, pixel
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/ui/panel/ReferenceFrame.java:149: pixelX ==> pixels, pixel
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/ui/panel/ReferenceFrame.java:196: pixelX ==> pixels, pixel
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/ui/panel/ReferenceFrame.java:199: pixelX ==> pixels, pixel
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/ui/panel/ReferenceFrame.java:200: pixelX ==> pixels, pixel
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/ui/panel/ReferenceFrame.java:200: pixelX ==> pixels, pixel
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/ui/panel/ReferenceFrame.java:612: pixelX ==> pixels, pixel
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/ui/panel/ReferenceFrame.java:735: divde ==> divide
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/ui/panel/ReferenceFrame.java:759: pixelX ==> pixels, pixel
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/ui/panel/RegionNavigatorDialog.java:81: synching ==> syncing
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/ui/panel/RegionNavigatorDialog.java:143: synching ==> syncing
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/ui/panel/RegionNavigatorDialog.java:159: synching ==> syncing
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/ui/panel/RegionNavigatorDialog.java:291: synching ==> syncing
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/ui/panel/RegionNavigatorDialog.java:810: subract ==> subtract
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/ui/panel/RegionOfInterestPanel.java:99: neccessary ==> necessary
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/ui/panel/TrackNamePanel.java:266: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/ui/panel/TrackNamePanel.java:293: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/ui/panel/TrackNamePanel.java:394: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/ui/panel/TrackNamePanel.java:395: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/ui/panel/TrackNamePanel.java:469: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/ui/panel/TrackNamePanel.java:470: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/ui/panel/TrackPanel.java:56: neccesarily ==> necessarily
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/ui/panel/TrackPanelComponent.java:177: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/ui/panel/TrackPanelComponent.java:178: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/ui/panel/TrackPanelComponent.java:181: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/ui/panel/TrackPanelComponent.java:183: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/ui/panel/TrackPanelComponent.java:195: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/ui/panel/TrackPanelComponent.java:202: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/ui/panel/TrackPanelComponent.java:215: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/ui/panel/TrackPanelScrollPane.java:65: neccessary ==> necessary
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/ui/panel/TrackPanelScrollPane.java:66: adustment ==> adjustment
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/ui/util/SimpleFormDialog.java:95: neccessary ==> necessary
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/util/CompressionUtils.java:115: orginal ==> original
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/util/CompressionUtils.java:129: clossing ==> closing
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/util/FileUtils.java:347: nuber ==> number
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/util/FileUtils.java:347: fro ==> for, from
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/util/FilterElement.java:234: charcters ==> characters
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/util/FilterElement.java:236: charcters ==> characters
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/util/FilterElement.java:239: charcters ==> characters
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/util/FilterElement.java:241: charcters ==> characters
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/util/FilterElement.java:247: charcters ==> characters
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/util/IntervalTree.java:134: effecient ==> efficient
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/util/OneKGUtils.java:36: utilties ==> utilities
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/util/ParsingUtils.java:326: numer ==> number
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/util/TutorialUtils.java:169: tanslate ==> translate
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/util/TutorialUtils.java:398: tanslate ==> translate
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/util/Utilities.java:121: nd ==> and, 2nd
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/util/Utilities.java:122: nd ==> and, 2nd
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/util/Utilities.java:124: nd ==> and, 2nd
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/util/blat/BlatClient.java:94: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/util/blat/BlatTableModel.java:47: mis-match ==> mismatch
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/util/encode/EncodeFileRecord.java:89: neccessary ==> necessary
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/util/index/IntervalTree.java:104: effecient ==> efficient
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/util/stats/Distribution.java:39: occurences ==> occurrences
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/util/stream/IGVSeekableFTPStream.java:163: resue ==> reuse, rescue
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/util/stream/IGVUrlHelper.java:84: resoure ==> resource
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/variant/Variant.java:100: similiar ==> similar
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/variant/VariantRenderer.java:96: neccessary ==> necessary
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/variant/VariantRenderer.java:136: pixelX ==> pixels, pixel
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/variant/VariantRenderer.java:143: pixelX ==> pixels, pixel
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/variant/VariantRenderer.java:181: pixelX ==> pixels, pixel
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/variant/VariantRenderer.java:186: pixelX ==> pixels, pixel
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/variant/VariantRenderer.java:308: betweeen ==> between
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/variant/VariantTrack.java:1237: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/variant/VariantTrack.java:1241: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/variant/VariantTrack.java:1242: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/variant/VariantTrack.java:1245: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/variant/VariantTrack.java:1247: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/variant/VariantTrack.java:1253: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/variant/VariantTrack.java:1254: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/variant/VariantTrack.java:1330: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/variant/VariantTrack.java:1334: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/variant/VariantTrack.java:1337: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/variant/VariantTrack.java:1338: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/variant/VariantTrack.java:1341: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/variant/VariantTrack.java:1341: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/variant/VariantTrack.java:1344: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/variant/VariantTrack.java:1375: te ==> the, be, we
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/variant/New/VariantCodec.java:121: actuall ==> actually, actual
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/variant/util/VCFtoBed.java:42: converstion ==> conversion, conversation
data/igv-2.6.3+dfsg/src/main/java/org/broad/igv/variant/vcf/VCFVariant.java:252: annoted ==> annotated
data/igv-2.6.3+dfsg/src/main/resources/org/broad/igv/feature/genome/GenomeBuilderPane.jfd:152: uniqe ==> unique
data/igv-2.6.3+dfsg/src/main/resources/org/broad/igv/feature/resources/AANamesTable.txt:5: Ser ==> Set
data/igv-2.6.3+dfsg/src/main/resources/org/broad/igv/feature/resources/AANamesTable.txt:6: Ser ==> Set
data/igv-2.6.3+dfsg/src/main/resources/org/broad/igv/feature/resources/AANamesTable.txt:7: Ser ==> Set
data/igv-2.6.3+dfsg/src/main/resources/org/broad/igv/feature/resources/AANamesTable.txt:8: Ser ==> Set
data/igv-2.6.3+dfsg/src/main/resources/org/broad/igv/feature/resources/AANamesTable.txt:45: Ser ==> Set
data/igv-2.6.3+dfsg/src/main/resources/org/broad/igv/feature/resources/AANamesTable.txt:46: Ser ==> Set
data/igv-2.6.3+dfsg/src/main/resources/org/broad/igv/feature/resources/geneticCode.json:1: instaed ==> instead
data/igv-2.6.3+dfsg/src/main/resources/org/broad/igv/prefs/preferences.tab:58: visibile ==> visible
data/igv-2.6.3+dfsg/src/main/resources/org/broad/igv/prefs/preferences.tab:113: visibile ==> visible
data/igv-2.6.3+dfsg/src/main/resources/org/broad/igv/prefs/preferences.tab:122: visibile ==> visible
data/igv-2.6.3+dfsg/src/main/resources/org/broad/igv/prefs/preferences.tab:168: inital ==> initial
data/igv-2.6.3+dfsg/src/main/resources/resources/codonTable.txt:5: Ser ==> Set
data/igv-2.6.3+dfsg/src/main/resources/resources/codonTable.txt:6: Ser ==> Set
data/igv-2.6.3+dfsg/src/main/resources/resources/codonTable.txt:7: Ser ==> Set
data/igv-2.6.3+dfsg/src/main/resources/resources/codonTable.txt:8: Ser ==> Set
data/igv-2.6.3+dfsg/src/main/resources/resources/codonTable.txt:45: Ser ==> Set
data/igv-2.6.3+dfsg/src/main/resources/resources/codonTable.txt:46: Ser ==> Set
data/igv-2.6.3+dfsg/src/test/java/org/broad/igv/feature/ProbeToGeneMapTest.java:66: critera ==> criteria
data/igv-2.6.3+dfsg/src/test/java/org/broad/igv/goby/GobyAlignmentQueryReaderTest.java:5: Weill ==> Will
data/igv-2.6.3+dfsg/src/test/java/org/broad/igv/goby/GobyCountArchiveDataSourceTest.java:4: Weill ==> Will
data/igv-2.6.3+dfsg/src/test/java/org/broad/igv/maf/MAFParserTest.java:55: ot ==> to, of, or
data/igv-2.6.3+dfsg/src/test/java/org/broad/igv/ui/color/PaletteColorTableTest.java:41: pallete ==> palette
data/igv-2.6.3+dfsg/test/data/gbk/pten_test.gbk:36: Hart ==> Heart, harm
data/igv-2.6.3+dfsg/test/data/gbk/pten_test.gbk:104: Ponting ==> Pointing
data/igv-2.6.3+dfsg/test/data/gff/color_sps.gff:4: truncted ==> truncated
data/igv-2.6.3+dfsg/test/data/goby/spliced/README.txt:1: aligment ==> alignment
data/igv-2.6.3+dfsg/test/data/sam/has_padding.sam:2: BA ==> BY, BE
data/igv-2.6.3+dfsg/test/data/sam/test_2.sam:294: ba ==> by, be
data/igv-2.6.3+dfsg/test/data/sam/test_2_plus_one_read.sam:294: ba ==> by, be
data/igv-2.6.3+dfsg/test/data/sam/test_5duplicates.sam:43: BA ==> BY, BE
data/igv-2.6.3+dfsg/test/data/sam/test_5duplicates.sam:57: BA ==> BY, BE
data/igv-2.6.3+dfsg/web/testSocketCommunication.html:20: recieved ==> received
data/igv-2.6.3+dfsg/web/webstart.js:6: modifed ==> modified
data/igv-2.6.3+dfsg/web/webstart.js:48: paramters ==> parameters
data/igv-2.6.3+dfsg/debian/changelog:5: Lightening ==> Lightning, lighting
data/igv-2.6.3+dfsg/debian/copyright:33: Weill ==> Will