data/libbpp-phyl-2.4.1/COPYING.txt:343: therefor ==> therefore data/libbpp-phyl-2.4.1/ChangeLog:430: chaged ==> changed, charged data/libbpp-phyl-2.4.1/ChangeLog:438: instanciate ==> instantiate data/libbpp-phyl-2.4.1/ChangeLog:509: splitted ==> split data/libbpp-phyl-2.4.1/ChangeLog:509: appart ==> apart data/libbpp-phyl-2.4.1/ChangeLog:516: inheritence ==> inheritance data/libbpp-phyl-2.4.1/ChangeLog:546: splitted ==> split data/libbpp-phyl-2.4.1/ChangeLog:558: inheritence ==> inheritance data/libbpp-phyl-2.4.1/ChangeLog:586: splitted ==> split data/libbpp-phyl-2.4.1/ChangeLog:587: imporved ==> improved data/libbpp-phyl-2.4.1/ChangeLog:618: stucked ==> stuck data/libbpp-phyl-2.4.1/ChangeLog:621: writting ==> writing data/libbpp-phyl-2.4.1/ChangeLog:648: contructor ==> constructor data/libbpp-phyl-2.4.1/Doxyfile:1078: therefor ==> therefore data/libbpp-phyl-2.4.1/src/Bpp/Phyl/BipartitionList.cpp:743: nd ==> and, 2nd data/libbpp-phyl-2.4.1/src/Bpp/Phyl/BipartitionList.cpp:765: nd ==> and, 2nd data/libbpp-phyl-2.4.1/src/Bpp/Phyl/BipartitionList.h:95: contructor ==> constructor data/libbpp-phyl-2.4.1/src/Bpp/Phyl/BipartitionList.h:174: correspondance ==> correspondence data/libbpp-phyl-2.4.1/src/Bpp/Phyl/BipartitionList.h:222: nd ==> and, 2nd data/libbpp-phyl-2.4.1/src/Bpp/Phyl/BipartitionTools.h:169: accomodates ==> accommodates data/libbpp-phyl-2.4.1/src/Bpp/Phyl/NNISearchable.h:73: swaping ==> swapping data/libbpp-phyl-2.4.1/src/Bpp/Phyl/NNISearchable.h:74: swaping ==> swapping data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Node.h:74: optionnal ==> optional data/libbpp-phyl-2.4.1/src/Bpp/Phyl/OptimizationTools.h:541: usefull ==> useful data/libbpp-phyl-2.4.1/src/Bpp/Phyl/OptimizationTools.h:571: instanciated ==> instantiated data/libbpp-phyl-2.4.1/src/Bpp/Phyl/OptimizationTools.h:597: bahavior ==> behavior data/libbpp-phyl-2.4.1/src/Bpp/Phyl/OptimizationTools.h:626: instanciated ==> instantiated data/libbpp-phyl-2.4.1/src/Bpp/Phyl/OptimizationTools.h:651: bahavior ==> behavior data/libbpp-phyl-2.4.1/src/Bpp/Phyl/OptimizationTools.h:680: bahavior ==> behavior data/libbpp-phyl-2.4.1/src/Bpp/Phyl/PatternTools.h:60: Theses ==> These, thesis data/libbpp-phyl-2.4.1/src/Bpp/Phyl/PatternTools.h:72: occured ==> occurred data/libbpp-phyl-2.4.1/src/Bpp/Phyl/PatternTools.h:81: occured ==> occurred data/libbpp-phyl-2.4.1/src/Bpp/Phyl/PatternTools.h:89: occured ==> occurred data/libbpp-phyl-2.4.1/src/Bpp/Phyl/PatternTools.h:94: occurence ==> occurrence data/libbpp-phyl-2.4.1/src/Bpp/Phyl/PatternTools.h:95: occurence ==> occurrence data/libbpp-phyl-2.4.1/src/Bpp/Phyl/PatternTools.h:99: vecotr ==> vector data/libbpp-phyl-2.4.1/src/Bpp/Phyl/SitePatterns.h:125: wll ==> will data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Tree.h:100: additionnal ==> additional data/libbpp-phyl-2.4.1/src/Bpp/Phyl/TreeTemplate.h:309: permited ==> permitted data/libbpp-phyl-2.4.1/src/Bpp/Phyl/TreeTemplateTools.cpp:439: unamed ==> unnamed data/libbpp-phyl-2.4.1/src/Bpp/Phyl/TreeTemplateTools.h:758: constuctor ==> constructor data/libbpp-phyl-2.4.1/src/Bpp/Phyl/TreeTemplateTools.h:791: constuctor ==> constructor data/libbpp-phyl-2.4.1/src/Bpp/Phyl/TreeTemplateTools.h:920: contianing ==> containing data/libbpp-phyl-2.4.1/src/Bpp/Phyl/TreeTemplateTools.h:999: writen ==> written data/libbpp-phyl-2.4.1/src/Bpp/Phyl/TreeTemplateTools.h:1024: writen ==> written data/libbpp-phyl-2.4.1/src/Bpp/Phyl/TreeTemplateTools.h:1201: caracteristic ==> characteristic data/libbpp-phyl-2.4.1/src/Bpp/Phyl/TreeTools.cpp:621: heigth ==> height data/libbpp-phyl-2.4.1/src/Bpp/Phyl/TreeTools.cpp:1123: occurences ==> occurrences data/libbpp-phyl-2.4.1/src/Bpp/Phyl/TreeTools.cpp:1124: occurences ==> occurrences data/libbpp-phyl-2.4.1/src/Bpp/Phyl/TreeTools.cpp:1136: occurences ==> occurrences data/libbpp-phyl-2.4.1/src/Bpp/Phyl/TreeTools.cpp:1136: occurences ==> occurrences data/libbpp-phyl-2.4.1/src/Bpp/Phyl/TreeTools.h:316: Lond ==> Long data/libbpp-phyl-2.4.1/src/Bpp/Phyl/TreeTools.h:325: devided ==> divided data/libbpp-phyl-2.4.1/src/Bpp/Phyl/TreeTools.h:329: Lond ==> Long data/libbpp-phyl-2.4.1/src/Bpp/Phyl/TreeTools.h:348: heigth ==> height data/libbpp-phyl-2.4.1/src/Bpp/Phyl/TreeTools.h:450: writen ==> written data/libbpp-phyl-2.4.1/src/Bpp/Phyl/TreeTools.h:476: writen ==> written data/libbpp-phyl-2.4.1/src/Bpp/Phyl/TreeTools.h:543: uniqe ==> unique data/libbpp-phyl-2.4.1/src/Bpp/Phyl/TreeTools.h:682: banch ==> branch, bench data/libbpp-phyl-2.4.1/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:175: instanciating ==> instantiating data/libbpp-phyl-2.4.1/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:204: instanciating ==> instantiating data/libbpp-phyl-2.4.1/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:357: instanciating ==> instantiating data/libbpp-phyl-2.4.1/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:456: instanciating ==> instantiating data/libbpp-phyl-2.4.1/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:1321: alogrithm ==> algorithm data/libbpp-phyl-2.4.1/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:1471: wich ==> which data/libbpp-phyl-2.4.1/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:102: occured ==> occurred data/libbpp-phyl-2.4.1/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:124: occured ==> occurred data/libbpp-phyl-2.4.1/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:138: Progam ==> Program data/libbpp-phyl-2.4.1/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:153: occured ==> occurred data/libbpp-phyl-2.4.1/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:194: occured ==> occurred data/libbpp-phyl-2.4.1/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:207: alpabet ==> alphabet data/libbpp-phyl-2.4.1/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:222: occured ==> occurred data/libbpp-phyl-2.4.1/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:239: alpabet ==> alphabet data/libbpp-phyl-2.4.1/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:253: occured ==> occurred data/libbpp-phyl-2.4.1/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:268: alpabet ==> alphabet data/libbpp-phyl-2.4.1/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:281: occured ==> occurred data/libbpp-phyl-2.4.1/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:353: alpabet ==> alphabet data/libbpp-phyl-2.4.1/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:364: occured ==> occurred data/libbpp-phyl-2.4.1/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:429: alpabet ==> alphabet data/libbpp-phyl-2.4.1/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:438: occured ==> occurred data/libbpp-phyl-2.4.1/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:463: occured ==> occurred data/libbpp-phyl-2.4.1/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:474: Progam ==> Program data/libbpp-phyl-2.4.1/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:482: occured ==> occurred data/libbpp-phyl-2.4.1/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:504: bahavior ==> behavior data/libbpp-phyl-2.4.1/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:584: descriptio ==> description data/libbpp-phyl-2.4.1/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:595: occured ==> occurred data/libbpp-phyl-2.4.1/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:610: descriptio ==> description data/libbpp-phyl-2.4.1/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:621: occured ==> occurred data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:161: occured ==> occurred data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:120: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:121: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:122: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:123: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:124: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:125: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:126: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:127: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:128: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:129: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:130: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:131: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:132: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:133: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:134: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:135: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:136: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:137: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:138: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:139: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:140: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:141: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:142: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:143: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:144: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:149: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:151: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:152: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:153: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:154: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:155: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:156: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:157: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:158: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:159: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:160: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:161: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:162: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:163: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:164: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:165: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:166: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:167: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:168: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:169: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:170: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:171: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:172: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:174: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:442: conainer ==> container data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:512: classe ==> class, classes data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:668: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:676: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:684: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Distance/DistanceEstimation.h:126: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Distance/DistanceEstimation.h:128: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Distance/DistanceEstimation.h:412: Assigment ==> Assignment data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Distance/DistanceEstimation.h:487: assciated ==> associated data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Distance/DistanceEstimation.h:498: assciated ==> associated data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h:52: ploting ==> plotting data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:48: ths ==> the, this data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:97: dne ==> done data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:98: dne ==> done data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:98: dne ==> done data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:101: dne ==> done data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:103: dne ==> done data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:104: dne ==> done data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:130: dne ==> done data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:131: dne ==> done data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:131: dne ==> done data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:134: dne ==> done data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:136: dne ==> done data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:137: dne ==> done data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Graphics/TreeDrawing.h:137: dne ==> done data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Graphics/TreeDrawing.h:138: dne ==> done data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Graphics/TreeDrawing.h:138: dne ==> done data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Graphics/TreeDrawing.h:138: dne ==> done data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Graphics/TreeDrawing.h:138: dne ==> done data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Graphics/TreeDrawing.h:141: dne ==> done data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Graphics/TreeDrawing.h:143: dne ==> done data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Graphics/TreeDrawing.h:144: dne ==> done data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Graphics/TreeDrawing.h:145: dne ==> done data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Graphics/TreeDrawing.h:146: dne ==> done data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Graphics/TreeDrawing.h:178: dne ==> done data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Graphics/TreeDrawing.h:179: dne ==> done data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Graphics/TreeDrawing.h:179: dne ==> done data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Graphics/TreeDrawing.h:179: dne ==> done data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Graphics/TreeDrawing.h:179: dne ==> done data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Graphics/TreeDrawing.h:182: dne ==> done data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Graphics/TreeDrawing.h:184: dne ==> done data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Graphics/TreeDrawing.h:185: dne ==> done data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Graphics/TreeDrawing.h:186: dne ==> done data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Graphics/TreeDrawing.h:187: dne ==> done data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Graphics/TreeDrawing.h:222: dne ==> done data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Graphics/TreeDrawing.h:223: dne ==> done data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Graphics/TreeDrawing.h:223: dne ==> done data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Graphics/TreeDrawing.h:250: reprensentation ==> representation data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Graphics/TreeDrawingDisplayControler.h:99: controler ==> controller data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Graphics/TreeDrawingDisplayControler.h:99: controler ==> controller data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Graphics/TreeDrawingDisplayControler.h:126: controler ==> controller data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Graphics/TreeDrawingDisplayControler.h:146: controler ==> controller data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp:162: unvalid ==> invalid data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp:531: uncorrect ==> incorrect data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp:768: instanciation ==> instantiation data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.h:54: Progam ==> Program data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Io/BppOMultiTreeReaderFormat.h:81: occured ==> occurred data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Io/BppOMultiTreeWriterFormat.h:81: occured ==> occurred data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:270: nd ==> and, 2nd data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:271: nd ==> and, 2nd data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:280: nd ==> and, 2nd data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:283: nd ==> and, 2nd data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:287: nd ==> and, 2nd data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:306: nd ==> and, 2nd data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:310: nd ==> and, 2nd data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:313: nd ==> and, 2nd data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:317: nd ==> and, 2nd data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:320: nd ==> and, 2nd data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:342: nd ==> and, 2nd data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:346: nd ==> and, 2nd data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:51: Progam ==> Program data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:70: contant ==> constant, content data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:388: Symetric ==> Symmetric data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:899: uncorrect ==> incorrect data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:1113: imbedded ==> embedded data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h:57: Progam ==> Program data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h:160: occured ==> occurred data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h:201: occured ==> occurred data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Io/BppOTransitionModelFormat.h:52: Progam ==> Program data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Io/BppOTreeReaderFormat.h:81: occured ==> occurred data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Io/BppOTreeWriterFormat.h:81: occured ==> occurred data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Io/IoDistanceMatrix.h:84: occured ==> occurred data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Io/IoDistanceMatrix.h:92: occured ==> occurred data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Io/IoDistanceMatrix.h:115: occured ==> occurred data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Io/IoDistanceMatrix.h:123: occured ==> occurred data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Io/IoFrequenciesSet.h:86: alpabet ==> alphabet data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Io/IoFrequenciesSet.h:88: fequency ==> frequency data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Io/IoFrequenciesSet.h:91: occured ==> occurred data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp:91: beggining ==> beginning data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp:259: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp:260: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp:261: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Io/IoPairedSiteLikelihoods.h:90: defaut ==> default data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Io/IoPairedSiteLikelihoods.h:99: defaut ==> default data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Io/IoSubstitutionModel.h:87: alpabet ==> alphabet data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Io/IoSubstitutionModel.h:89: parmaeters ==> parameters data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Io/IoSubstitutionModel.h:92: occured ==> occurred data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Io/IoSubstitutionModel.h:127: occured ==> occurred data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Io/IoTree.h:87: occured ==> occurred data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Io/IoTree.h:95: occured ==> occurred data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Io/IoTree.h:118: occured ==> occurred data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Io/IoTree.h:126: occured ==> occurred data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Io/IoTree.h:206: occured ==> occurred data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Io/IoTree.h:214: occured ==> occurred data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Io/IoTree.h:237: occured ==> occurred data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Io/IoTree.h:245: occured ==> occurred data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Io/NexusIoTree.cpp:120: Unvalid ==> Invalid data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Io/NexusIoTree.cpp:137: Unvalid ==> Invalid data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Io/NexusIoTree.cpp:140: unvalid ==> invalid data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Io/Nhx.cpp:67: ND ==> AND, 2ND data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Io/Nhx.cpp:299: ND ==> AND, 2ND data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Io/Nhx.cpp:355: Unvalid ==> Invalid data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Io/Nhx.cpp:361: Unvalid ==> Invalid data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Io/Nhx.cpp:367: Unvalid ==> Invalid data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Io/Nhx.cpp:373: Unvalid ==> Invalid data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Io/Nhx.cpp:418: ND ==> AND, 2ND data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Io/Nhx.cpp:420: ND ==> AND, 2ND data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Io/Nhx.cpp:513: ND ==> AND, 2ND data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Io/Nhx.cpp:515: ND ==> AND, 2ND data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Io/Nhx.cpp:516: ND ==> AND, 2ND data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.h:53: therefor ==> therefore data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.h:53: contian ==> contain data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:89: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:90: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:91: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:92: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:93: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:94: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:95: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:96: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:98: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:99: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:100: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:101: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:102: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:103: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:104: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:105: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:106: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:115: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:117: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:118: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:119: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:120: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:121: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:122: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:123: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:126: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:127: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:128: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:129: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:130: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:131: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:132: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:133: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:136: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:131: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:138: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:251: sould ==> could, should, sold data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:261: sould ==> could, should, sold data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:92: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:93: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:94: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:95: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:96: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:97: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:98: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:99: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:102: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:103: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:104: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:105: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:106: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:107: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:108: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:109: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:110: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:111: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:112: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:113: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:128: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:130: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:131: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:132: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:133: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:134: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:135: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:136: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:139: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:140: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:141: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:142: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:143: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:144: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:145: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:146: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:148: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:149: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:150: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:151: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:145: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:152: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:260: sould ==> could, should, sold data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:270: sould ==> could, should, sold data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:244: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:245: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:248: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:249: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:250: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:252: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:252: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:253: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:253: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:256: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:258: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:260: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:260: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:263: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:263: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:265: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:266: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:267: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:60: correspondance ==> correspondence data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:104: conditionnal ==> conditional data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:405: occures ==> occurs data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp:143: conainer ==> container data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp:246: conainer ==> container data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.h:61: conditionnal ==> conditional data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.h:140: intialized ==> initialized data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:110: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:112: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:119: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:120: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:123: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:128: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:129: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:130: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:131: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:132: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:136: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:137: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:89: occured ==> occurred data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:113: occured ==> occurred data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:124: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:126: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:101: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:102: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:106: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:108: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:113: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:115: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:118: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:120: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:159: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:163: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:173: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:178: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:512: classe ==> class, classes data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:578: classe ==> class, classes data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:703: classe ==> class, classes data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:845: classe ==> class, classes data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:858: conditionnal ==> conditional data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:896: classe ==> class, classes data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:912: conditionnal ==> conditional data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:928: classe ==> class, classes data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:941: conditionnal ==> conditional data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:60: conditionnal ==> conditional data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:87: occured ==> occurred data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:108: occured ==> occurred data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:121: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:123: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:221: initilize ==> initialize data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:249: uppon ==> upon data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:260: initalized ==> initialized data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:275: uppon ==> upon data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:289: initalized ==> initialized data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:105: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:106: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:108: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:110: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:116: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:118: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:121: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:123: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:163: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:167: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:177: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:182: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:884: classe ==> class, classes data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:950: classe ==> class, classes data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:1075: classe ==> class, classes data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:1206: classe ==> class, classes data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:1219: conditionnal ==> conditional data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:1257: classe ==> class, classes data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:1273: conditionnal ==> conditional data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:1289: classe ==> class, classes data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:1302: conditionnal ==> conditional data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:60: conditionnal ==> conditional data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:89: occured ==> occurred data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:110: occured ==> occurred data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:123: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:125: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:224: initilize ==> initialize data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:252: uppon ==> upon data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:263: initalized ==> initialized data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:278: uppon ==> upon data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:292: initalized ==> initialized data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/DiscreteRatesAcrossSitesTreeLikelihood.h:181: distirbution ==> distribution data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:169: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:170: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:176: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:177: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:178: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:179: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:184: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:186: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:188: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:190: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:191: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:192: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:290: Unvalid ==> Invalid data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:332: Unvalid ==> Invalid data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:192: occured ==> occurred data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:211: occured ==> occurred data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:224: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:226: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/PseudoNewtonOptimizer.cpp:116: personnal ==> personal data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RASTools.h:62: objet ==> object data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RASTools.h:66: implmenting ==> implementing data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.h:60: easilly ==> easily data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.h:86: occured ==> occurred data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.h:109: occured ==> occurred data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:104: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:106: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:113: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:114: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:121: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:122: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:123: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:124: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:128: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:129: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:100: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:101: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:103: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:105: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:112: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:114: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:116: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:118: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:817: classe ==> class, classes data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:846: classe ==> class, classes data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:59: conditionnal ==> conditional data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:78: usefull ==> useful data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:80: whith ==> with data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:106: occured ==> occurred data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:129: occured ==> occurred data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:140: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:142: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:254: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:255: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:257: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:258: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:259: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:262: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:262: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:274: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:276: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:280: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:281: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:284: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:284: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:292: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:482: classe ==> class, classes data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:509: classe ==> class, classes data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:593: classe ==> class, classes data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:685: classe ==> class, classes data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:727: nd ==> and, 2nd data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:728: nd ==> and, 2nd data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:735: nd ==> and, 2nd data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:736: nd ==> and, 2nd data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:737: nd ==> and, 2nd data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:741: nd ==> and, 2nd data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h:127: occured ==> occurred data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h:157: occured ==> occurred data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h:193: occured ==> occurred data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h:215: occured ==> occurred data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h:224: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h:226: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:105: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:106: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:108: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:110: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:117: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:119: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:121: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:123: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:1301: classe ==> class, classes data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:1330: classe ==> class, classes data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:59: conditionnal ==> conditional data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:78: usefull ==> useful data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:80: whith ==> with data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:108: occured ==> occurred data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:130: occured ==> occurred data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:141: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:143: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:90: speicfied ==> specified data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:92: conditionnal ==> conditional data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:93: correspondance ==> correspondence data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:74: unvalid ==> invalid data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:93: unvalid ==> invalid data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Mapping/DecompositionReward.cpp:57: compatiblity ==> compatibility data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Mapping/DecompositionReward.cpp:136: compatiblity ==> compatibility data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Mapping/DecompositionReward.cpp:156: compatiblity ==> compatibility data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp:58: compatiblity ==> compatibility data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp:168: compatiblity ==> compatibility data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp:187: compatiblity ==> compatibility data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:78: discribes ==> describes data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:79: relevent ==> relevant data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:50: occured ==> occurred data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Mapping/RewardMappingTools.cpp:88: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Mapping/RewardMappingTools.cpp:89: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Mapping/RewardMappingTools.cpp:95: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Mapping/SubstitutionCount.h:155: relevent ==> relevant data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:94: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:95: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:101: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:407: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:408: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:414: lik ==> like, lick, link data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:869: uppon ==> upon data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:869: uppon ==> upon data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:1875: devide ==> divide data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:2032: branchs ==> branches data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:2154: branchs ==> branches data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.h:148: objet ==> object data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.h:151: objet ==> object data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.h:151: irrelevent ==> irrelevant data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.h:225: obect ==> object data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:953: nd ==> and, 2nd data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:963: nd ==> and, 2nd data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:965: nd ==> and, 2nd data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:973: nd ==> and, 2nd data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:975: nd ==> and, 2nd data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:982: nd ==> and, 2nd data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:989: nd ==> and, 2nd data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:993: nd ==> and, 2nd data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp:63: compatiblity ==> compatibility data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp:226: compatiblity ==> compatibility data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp:257: compatiblity ==> compatibility data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp:121: alph ==> alpha data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp:125: alph ==> alpha data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h:209: alph ==> alpha data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:132: symetric ==> symmetric data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:129: alph ==> alpha data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:133: alph ==> alpha data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:224: alph ==> alpha data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Model/KroneckerWordSubstitutionModel.cpp:70: alph ==> alpha data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Model/KroneckerWordSubstitutionModel.cpp:74: alph ==> alpha data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Model/KroneckerWordSubstitutionModel.h:136: alph ==> alpha data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Model/MixedSubstitutionModelSet.cpp:136: nd ==> and, 2nd data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Model/MixedSubstitutionModelSet.cpp:137: nd ==> and, 2nd data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Model/MixedSubstitutionModelSet.cpp:144: nd ==> and, 2nd data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Model/MixedSubstitutionModelSet.cpp:146: nd ==> and, 2nd data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.h:77: Optionnal ==> Optional data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.h:77: homogeneize ==> homogenize data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.h:96: objets ==> objects data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Model/RE08.h:56: conditionnal ==> conditional data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Model/RE08.h:56: subtitution ==> substitution data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Model/StateMap.h:174: contructors ==> constructors data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Model/StateMap.h:175: alread ==> already data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Model/SubstitutionModel.h:458: attibute ==> attribute data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Model/SubstitutionModel.h:579: symetric ==> symmetric data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Model/SubstitutionModelSet.h:71: assigment ==> assignment data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Model/SubstitutionModelSet.h:90: Theses ==> These, thesis data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Model/SubstitutionModelSet.h:90: objet ==> object data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Model/SubstitutionModelSet.h:91: begining ==> beginning data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Model/SubstitutionModelSet.h:97: supposingly ==> supposedly data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Model/SubstitutionModelSet.h:101: carefull ==> careful, carefully data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Model/SubstitutionModelSet.h:137: correspondance ==> correspondence data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Model/SubstitutionModelSet.h:276: sustitution ==> substitution data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Model/SubstitutionModelSet.h:289: sustitution ==> substitution data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Model/WordSubstitutionModel.cpp:82: alph ==> alpha data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Model/WordSubstitutionModel.cpp:86: alph ==> alpha data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Model/WordSubstitutionModel.h:115: alph ==> alpha data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Model/Codon/AbstractCodonCpGSubstitutionModel.h:50: symetric ==> symmetric data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Model/Codon/AbstractCodonFrequenciesSubstitutionModel.h:52: ans ==> and data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.h:54: ans ==> and data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.h:55: ans ==> and data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.h:56: ans ==> and data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Model/Codon/GY94.h:77: infered ==> inferred data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Model/Codon/KCM.h:68: infered ==> inferred data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceFrequenciesSubstitutionModel.h:61: ans ==> and data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Model/Codon/MG94.h:72: infered ==> inferred data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Model/Codon/YN98.h:83: infered ==> inferred data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Model/Codon/YNGP_M1.h:64: infered ==> inferred data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Model/Codon/YNGP_M10.h:63: infered ==> inferred data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Model/Codon/YNGP_M2.h:63: infered ==> inferred data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Model/Codon/YNGP_M3.h:57: garantee ==> guarantee data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Model/Codon/YNGP_M3.h:64: infered ==> inferred data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Model/Codon/YNGP_M7.h:60: infered ==> inferred data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Model/Codon/YNGP_M8.h:63: infered ==> inferred data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Model/Codon/YNGP_M9.h:63: infered ==> inferred data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:638: Unvalid ==> Invalid data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Model/Nucleotide/F84.cpp:95: Frequences ==> Frequencies data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Model/Nucleotide/JCnuc.h:165: usefull ==> useful data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Model/Nucleotide/K80.cpp:70: Frequences ==> Frequencies data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Parsimony/AbstractTreeParsimonyData.h:55: correspondance ==> correspondence data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.cpp:242: fro ==> for, from data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.h:148: fo ==> of, for data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.h:173: realy ==> really data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Parsimony/TreeParsimonyData.h:88: correspondance ==> correspondence data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Parsimony/TreeParsimonyScore.h:88: wich ==> which data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:59: occured ==> occurred data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:203: sructure ==> structure data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Simulation/MutationProcess.cpp:151: Forbiden ==> Forbidden data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Simulation/MutationProcess.h:189: occured ==> occurred data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Simulation/MutationProcess.h:200: occure ==> occur, occurred data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Simulation/MutationProcess.h:240: occure ==> occur, occurred data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Simulation/MutationProcess.h:251: occure ==> occur, occurred data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Simulation/MutationProcess.h:265: implmentation ==> implementation data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Simulation/MutationProcess.h:358: occure ==> occur, occurred data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:167: equilibrum ==> equilibrium data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:286: equilibrum ==> equilibrium data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:357: equilibrum ==> equilibrium data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:414: equilibrum ==> equilibrium data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:93: explicitely ==> explicitly data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:122: ouptut ==> output data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Simulation/SequenceSimulationTools.h:70: realy ==> really data/libbpp-phyl-2.4.1/src/Bpp/Phyl/Simulation/SequenceSimulationTools.h:86: realy ==> really data/libbpp-phyl-2.4.1/debian/changelog:221: detailled ==> detailed data/libbpp-phyl-2.4.1/debian/copyright:376: therefor ==> therefore