data/libvamsas-client-java-0.2~git2011.10.17+1b42648/demo/dataset/Proteins-ZP-aligned.fasta:256: ND ==> AND, 2ND
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/org/apache/tools/zip/ExtraFieldUtils.java:71: approriate ==> appropriate
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/org/apache/tools/zip/ExtraFieldUtils.java:76: appropiate ==> appropriate
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/org/apache/tools/zip/ExtraFieldUtils.java:80: instatiate ==> instantiate
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/org/apache/tools/zip/ZipOutputStream.java:323: Finishs ==> Finishes
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/org/apache/tools/zip/ZipEntry.java:395: implemention ==> implementation
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/uk/ac/vamsas/objects/DocumentUpdaterEngine.java:44: hander ==> handler
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/uk/ac/vamsas/objects/core/Input.java:49: specfication ==> specification
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/uk/ac/vamsas/objects/utils/Mapping.java:300: modifed ==> modified
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/uk/ac/vamsas/objects/utils/MapList.java:624: fromS ==> forms
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/uk/ac/vamsas/objects/utils/MapList.java:625: fromE ==> from
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/uk/ac/vamsas/objects/utils/MapList.java:627: fromS ==> forms
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/uk/ac/vamsas/objects/utils/MapList.java:627: fromE ==> from
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/uk/ac/vamsas/objects/utils/Properties.java:53: occurance ==> occurrence
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/uk/ac/vamsas/objects/utils/AppDataReference.java:159: datas ==> data
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/uk/ac/vamsas/objects/utils/trees/NewickFile.java:543: specificied ==> specified
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/uk/ac/vamsas/objects/utils/trees/NewickFile.java:906: occurence ==> occurrence
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/uk/ac/vamsas/objects/utils/trees/NewickFile.java:910: occurence ==> occurrence
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/uk/ac/vamsas/objects/utils/trees/NewickFile.java:919: occurence ==> occurrence
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/uk/ac/vamsas/test/ExampleApplication.java:247: ois ==> is
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/uk/ac/vamsas/test/ExampleApplication.java:248: ois ==> is
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/uk/ac/vamsas/test/ExampleApplication.java:395: successfuly ==> successfully
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/uk/ac/vamsas/test/ExampleApplication.java:515: Succesfully ==> Successfully
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/uk/ac/vamsas/test/document/SAXTreeViewer.java:222: existant ==> existent
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/uk/ac/vamsas/test/document/SAXTreeViewer.java:273: bulding ==> building
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/uk/ac/vamsas/test/simpleclient/ArchiveWatcher.java:101: existant ==> existent
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/uk/ac/vamsas/test/simpleclient/ArchiveClient.java:298: transfered ==> transferred
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/uk/ac/vamsas/test/simpleclient/ClientDoc.java:204: ducument ==> document
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/uk/ac/vamsas/test/simpleclient/simpleapp/VamsasClient.java:84: syncrhonised ==> synchronised
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/uk/ac/vamsas/test/simpleclient/simpleapp/VamsasClient.java:91: arount ==> around
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/uk/ac/vamsas/test/simpleclient/simpleapp/VamsasClient.java:111: arount ==> around
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/uk/ac/vamsas/client/IClientDocument.java:32: queriable ==> queryable
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/uk/ac/vamsas/client/IClientFactory.java:83: sesssion ==> session
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/uk/ac/vamsas/client/IClient.java:28: availabable ==> available
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/uk/ac/vamsas/client/Vobject.java:410: acessed ==> accessed
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/uk/ac/vamsas/client/Vobject.java:504: intialised ==> initialised
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/uk/ac/vamsas/client/simpleclient/Lock.java:133: begining ==> beginning
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/uk/ac/vamsas/client/simpleclient/SimpleClientAppdata.java:60: entrys ==> entries, entry
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/uk/ac/vamsas/client/simpleclient/ClientDocument.java:338: ducument ==> document
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/uk/ac/vamsas/client/simpleclient/ClientDocument.java:640: successully ==> successfully
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/uk/ac/vamsas/client/simpleclient/EventGeneratorThread.java:335: occured ==> occurred
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/uk/ac/vamsas/client/simpleclient/VamsasArchiveReader.java:245: geting ==> getting
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/uk/ac/vamsas/client/simpleclient/VamsasFileWatcherThread.java:80: arount ==> around
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/uk/ac/vamsas/client/simpleclient/VamsasSession.java:51: intialised ==> initialised
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/uk/ac/vamsas/client/simpleclient/VamsasSession.java:622: readd ==> re-add, read
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/uk/ac/vamsas/client/simpleclient/VamsasSession.java:794: readd ==> re-add, read
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/uk/ac/vamsas/client/simpleclient/VamsasSession.java:854: cpoy ==> coy, copy
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/uk/ac/vamsas/client/simpleclient/NativeLock.java:97: rigourous ==> rigorous
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/uk/ac/vamsas/client/simpleclient/NativeLock.java:104: channe ==> channel
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/uk/ac/vamsas/client/simpleclient/SimpleClient.java:227: ths ==> the, this
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/uk/ac/vamsas/client/simpleclient/SimpleClient.java:228: ths ==> the, this
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/uk/ac/vamsas/client/simpleclient/SimpleClient.java:228: ths ==> the, this
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/uk/ac/vamsas/client/simpleclient/SimpleClient.java:497: interrrupting ==> interrupting
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/uk/ac/vamsas/client/simpleclient/SimpleClient.java:499: interrrupted ==> interrupted
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/uk/ac/vamsas/client/simpleclient/SessionUrn.java:33: consideres ==> considered, considers
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/uk/ac/vamsas/client/simpleclient/SessionsFile.java:241: modifes ==> modifies
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/uk/ac/vamsas/client/simpleclient/SessionsFile.java:351: Unitialized ==> Uninitialized
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/uk/ac/vamsas/client/simpleclient/VamsasArchive.java:77: ths ==> the, this
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/uk/ac/vamsas/client/simpleclient/VamsasArchive.java:80: ths ==> the, this
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/uk/ac/vamsas/client/simpleclient/VamsasArchive.java:114: ths ==> the, this
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/uk/ac/vamsas/client/simpleclient/VamsasArchive.java:120: ths ==> the, this
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/uk/ac/vamsas/client/simpleclient/VamsasArchive.java:123: ths ==> the, this
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/uk/ac/vamsas/client/simpleclient/VamsasArchive.java:128: ths ==> the, this
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/uk/ac/vamsas/client/simpleclient/VamsasArchive.java:130: ths ==> the, this
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/uk/ac/vamsas/client/simpleclient/VamsasArchive.java:137: ths ==> the, this
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/uk/ac/vamsas/client/simpleclient/VamsasArchive.java:141: ths ==> the, this
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/uk/ac/vamsas/client/simpleclient/VamsasArchive.java:143: ths ==> the, this
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/uk/ac/vamsas/client/simpleclient/VamsasArchive.java:144: ths ==> the, this
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/uk/ac/vamsas/client/simpleclient/VamsasArchive.java:216: constructer ==> constructor
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/uk/ac/vamsas/client/simpleclient/VamsasArchive.java:311: immediatly ==> immediately
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/uk/ac/vamsas/client/simpleclient/VamsasArchive.java:872: Sucessfully ==> Successfully
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/uk/ac/vamsas/client/simpleclient/VamsasArchive.java:926: transfered ==> transferred
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/uk/ac/vamsas/client/simpleclient/VamsasArchive.java:947: transfered ==> transferred
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/uk/ac/vamsas/client/simpleclient/VamsasArchive.java:952: transfered ==> transferred
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/uk/ac/vamsas/client/simpleclient/VamsasArchive.java:969: writen ==> written
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/uk/ac/vamsas/client/simpleclient/ClientsFile.java:220: modifes ==> modifies
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/src/uk/ac/vamsas/client/simpleclient/ClientsFile.java:335: Unitialized ==> Uninitialized
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/schemas/vamsas.xsd:369: specfication ==> specification
data/libvamsas-client-java-0.2~git2011.10.17+1b42648/.pc/castor-util-to-castor-core-utils.diff/src/uk/ac/vamsas/objects/core/Input.java:49: specfication ==> specification