data/pbsuite-15.8.24+dfsg/CHANGELOG.txt:62: defualt ==> default data/pbsuite-15.8.24+dfsg/CHANGELOG.txt:96: outputing ==> outputting data/pbsuite-15.8.24+dfsg/bin/m4pie.py:99: upto ==> up to data/pbsuite-15.8.24+dfsg/bin/mapStats.py:76: alignemnt ==> alignment data/pbsuite-15.8.24+dfsg/bin/summarizeAssembly.py:227: betwen ==> between data/pbsuite-15.8.24+dfsg/bin/Extraction.py:213: Finshed ==> Finished data/pbsuite-15.8.24+dfsg/bin/Extraction.py:255: insufficent ==> insufficient data/pbsuite-15.8.24+dfsg/bin/Setup.py:115: prevEnd ==> prevent data/pbsuite-15.8.24+dfsg/bin/Setup.py:118: prevEnd ==> prevent data/pbsuite-15.8.24+dfsg/bin/Setup.py:131: prevEnd ==> prevent data/pbsuite-15.8.24+dfsg/bin/realign.py:172: jsut ==> just data/pbsuite-15.8.24+dfsg/bin/Assembly.py:780: paramters ==> parameters data/pbsuite-15.8.24+dfsg/bin/bampie.py:156: upto ==> up to data/pbsuite-15.8.24+dfsg/bin/Jelly.py:97: specifiy ==> specify data/pbsuite-15.8.24+dfsg/bin/Collection.py:303: filpped ==> flipped data/pbsuite-15.8.24+dfsg/bin/Collection.py:747: Filps ==> Flips data/pbsuite-15.8.24+dfsg/bin/Collection.py:767: filp ==> flip data/pbsuite-15.8.24+dfsg/bin/Collection.py:858: filp ==> flip data/pbsuite-15.8.24+dfsg/bin/TGraf.py:647: ambigous ==> ambiguous data/pbsuite-15.8.24+dfsg/bin/HSpots.py:278: Coverge ==> Coverage data/pbsuite-15.8.24+dfsg/bin/HSpots.py:423: Ouput ==> Output data/pbsuite-15.8.24+dfsg/bin/HSpots.py:556: depricated ==> deprecated data/pbsuite-15.8.24+dfsg/bin/HSpots.py:826: incase ==> in case data/pbsuite-15.8.24+dfsg/bin/HSpots.py:919: noone ==> no one data/pbsuite-15.8.24+dfsg/bin/Force.py:23: upto ==> up to data/pbsuite-15.8.24+dfsg/bin/Force.py:299: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/bin/Force.py:301: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/bin/Force.py:302: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/bin/Force.py:302: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/bin/Force.py:303: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/bin/Force.py:306: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/bin/Force.py:308: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/bin/Force.py:309: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/bin/Force.py:309: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/bin/Force.py:310: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/bin/Force.py:336: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/bin/Force.py:339: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/bin/Force.py:394: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/bin/Force.py:401: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/bin/Force.py:430: subraction ==> subtraction data/pbsuite-15.8.24+dfsg/bin/Force.py:461: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/bin/Force.py:463: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/bin/Force.py:464: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/bin/Force.py:464: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/bin/Force.py:468: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/bin/Force.py:634: outputing ==> outputting data/pbsuite-15.8.24+dfsg/bin/Support.py:148: apropriate ==> appropriate data/pbsuite-15.8.24+dfsg/bin/Support.py:266: candiate ==> candidate data/pbsuite-15.8.24+dfsg/bin/Support.py:398: arbiturarily ==> arbitrarily data/pbsuite-15.8.24+dfsg/bin/Support.py:639: spport ==> support data/pbsuite-15.8.24+dfsg/docs/HoneyReadme.txt:110: defualts ==> defaults data/pbsuite-15.8.24+dfsg/docs/HoneyReadme.txt:213: structrual ==> structural data/pbsuite-15.8.24+dfsg/docs/HoneyReadme.txt:219: infomation ==> information data/pbsuite-15.8.24+dfsg/docs/HoneyReadme.txt:234: coloumns ==> columns data/pbsuite-15.8.24+dfsg/docs/HoneyReadme.txt:319: orgin ==> origin, organ data/pbsuite-15.8.24+dfsg/docs/HoneyReadme.txt:320: corectly ==> correctly data/pbsuite-15.8.24+dfsg/docs/HoneyReadme.txt:410: occured ==> occurred data/pbsuite-15.8.24+dfsg/docs/JellyReadme.txt:42: compatable ==> compatible data/pbsuite-15.8.24+dfsg/docs/JellyReadme.txt:261: reccommend ==> recommend data/pbsuite-15.8.24+dfsg/pbsuite/utils/BedIO.py:20: infomation ==> information data/pbsuite-15.8.24+dfsg/pbsuite/utils/BedIO.py:65: infomation ==> information data/pbsuite-15.8.24+dfsg/pbsuite/utils/BedIO.py:94: infomation ==> information data/pbsuite-15.8.24+dfsg/pbsuite/utils/CommandRunner.py:99: executeable ==> executable data/pbsuite-15.8.24+dfsg/pbsuite/utils/mapStats.py:76: alignemnt ==> alignment data/pbsuite-15.8.24+dfsg/pbsuite/utils/summarizeAssembly.py:227: betwen ==> between data/pbsuite-15.8.24+dfsg/pbsuite/utils/FileHandlers.py:203: returing ==> returning data/pbsuite-15.8.24+dfsg/pbsuite/utils/FileHandlers.py:371: programatically ==> programmatically data/pbsuite-15.8.24+dfsg/pbsuite/utils/FileHandlers.py:467: efficently ==> efficiently data/pbsuite-15.8.24+dfsg/pbsuite/utils/vcfTemplates/phased.snps.vcf:6: Numer ==> Number data/pbsuite-15.8.24+dfsg/pbsuite/utils/vcfTemplates/phased.snps.vcf:6: Interger ==> Integer data/pbsuite-15.8.24+dfsg/pbsuite/banana/MakeOverlapTable.py:18: Depricated ==> Deprecated data/pbsuite-15.8.24+dfsg/pbsuite/banana/OLCAssembly.py:17: transparcency ==> transparency data/pbsuite-15.8.24+dfsg/pbsuite/banana/OLCAssembly.py:65: ouput ==> output data/pbsuite-15.8.24+dfsg/pbsuite/banana/OLCAssembly.py:211: tigger ==> trigger data/pbsuite-15.8.24+dfsg/pbsuite/banana/OLCAssembly.py:242: tigger ==> trigger data/pbsuite-15.8.24+dfsg/pbsuite/banana/Polish.py:221: flie ==> file data/pbsuite-15.8.24+dfsg/pbsuite/jelly/Setup.py:115: prevEnd ==> prevent data/pbsuite-15.8.24+dfsg/pbsuite/jelly/Setup.py:118: prevEnd ==> prevent data/pbsuite-15.8.24+dfsg/pbsuite/jelly/Setup.py:131: prevEnd ==> prevent data/pbsuite-15.8.24+dfsg/pbsuite/jelly/Assembly.py:780: paramters ==> parameters data/pbsuite-15.8.24+dfsg/pbsuite/jelly/Collection.py:303: filpped ==> flipped data/pbsuite-15.8.24+dfsg/pbsuite/jelly/Collection.py:747: Filps ==> Flips data/pbsuite-15.8.24+dfsg/pbsuite/jelly/Collection.py:767: filp ==> flip data/pbsuite-15.8.24+dfsg/pbsuite/jelly/Collection.py:858: filp ==> flip data/pbsuite-15.8.24+dfsg/pbsuite/jelly/Extraction.py:213: Finshed ==> Finished data/pbsuite-15.8.24+dfsg/pbsuite/jelly/Extraction.py:255: insufficent ==> insufficient data/pbsuite-15.8.24+dfsg/pbsuite/jelly/Jelly.py:97: specifiy ==> specify data/pbsuite-15.8.24+dfsg/pbsuite/jelly/Support.py:148: apropriate ==> appropriate data/pbsuite-15.8.24+dfsg/pbsuite/jelly/Support.py:266: candiate ==> candidate data/pbsuite-15.8.24+dfsg/pbsuite/jelly/Support.py:398: arbiturarily ==> arbitrarily data/pbsuite-15.8.24+dfsg/pbsuite/jelly/Support.py:639: spport ==> support data/pbsuite-15.8.24+dfsg/pbsuite/jelly/m4pie.py:99: upto ==> up to data/pbsuite-15.8.24+dfsg/pbsuite/honey/ComplexResolver.py:259: betwen ==> between data/pbsuite-15.8.24+dfsg/pbsuite/honey/ComplexResolver.py:379: upto ==> up to data/pbsuite-15.8.24+dfsg/pbsuite/honey/ComplexResolver.py:397: occurance ==> occurrence data/pbsuite-15.8.24+dfsg/pbsuite/honey/HSpots.pyx:465: noone ==> no one data/pbsuite-15.8.24+dfsg/pbsuite/honey/HSpots.pyx:623: Coverge ==> Coverage data/pbsuite-15.8.24+dfsg/pbsuite/honey/HSpots.pyx:717: expectaions ==> expectations data/pbsuite-15.8.24+dfsg/pbsuite/honey/HSpots.pyx:752: DEPRICATED ==> DEPRECATED data/pbsuite-15.8.24+dfsg/pbsuite/honey/HSpots.pyx:893: doesnt ==> doesn't, does not data/pbsuite-15.8.24+dfsg/pbsuite/honey/HSpots.pyx:947: Kernals ==> Kernels data/pbsuite-15.8.24+dfsg/pbsuite/honey/Force.py:23: upto ==> up to data/pbsuite-15.8.24+dfsg/pbsuite/honey/Force.py:299: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/pbsuite/honey/Force.py:301: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/pbsuite/honey/Force.py:302: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/pbsuite/honey/Force.py:302: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/pbsuite/honey/Force.py:303: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/pbsuite/honey/Force.py:306: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/pbsuite/honey/Force.py:308: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/pbsuite/honey/Force.py:309: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/pbsuite/honey/Force.py:309: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/pbsuite/honey/Force.py:310: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/pbsuite/honey/Force.py:336: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/pbsuite/honey/Force.py:339: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/pbsuite/honey/Force.py:394: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/pbsuite/honey/Force.py:401: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/pbsuite/honey/Force.py:430: subraction ==> subtraction data/pbsuite-15.8.24+dfsg/pbsuite/honey/Force.py:461: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/pbsuite/honey/Force.py:463: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/pbsuite/honey/Force.py:464: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/pbsuite/honey/Force.py:464: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/pbsuite/honey/Force.py:468: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/pbsuite/honey/Force.py:634: outputing ==> outputting data/pbsuite-15.8.24+dfsg/pbsuite/honey/Valid.py:74: Continuting ==> Continuing data/pbsuite-15.8.24+dfsg/pbsuite/honey/bakH.py:260: Coverge ==> Coverage data/pbsuite-15.8.24+dfsg/pbsuite/honey/bakH.py:417: Ouput ==> Output data/pbsuite-15.8.24+dfsg/pbsuite/honey/bakH.py:545: depricated ==> deprecated data/pbsuite-15.8.24+dfsg/pbsuite/honey/bakH.py:819: incase ==> in case data/pbsuite-15.8.24+dfsg/pbsuite/honey/bakH.py:907: noone ==> no one data/pbsuite-15.8.24+dfsg/pbsuite/honey/bampie.py:156: upto ==> up to data/pbsuite-15.8.24+dfsg/pbsuite/honey/massivePhrap.py:131: retreived ==> retrieved data/pbsuite-15.8.24+dfsg/pbsuite/honey/realign.py:172: jsut ==> just data/pbsuite-15.8.24+dfsg/pbsuite/honey/recallSpots.py:39: expectaions ==> expectations data/pbsuite-15.8.24+dfsg/pbsuite/honey/spotH5Merge.py:7: multple ==> multiple data/pbsuite-15.8.24+dfsg/pbsuite/honey/TGraf.py:647: ambigous ==> ambiguous data/pbsuite-15.8.24+dfsg/pbsuite/honey/HSpots.py:278: Coverge ==> Coverage data/pbsuite-15.8.24+dfsg/pbsuite/honey/HSpots.py:423: Ouput ==> Output data/pbsuite-15.8.24+dfsg/pbsuite/honey/HSpots.py:556: depricated ==> deprecated data/pbsuite-15.8.24+dfsg/pbsuite/honey/HSpots.py:826: incase ==> in case data/pbsuite-15.8.24+dfsg/pbsuite/honey/HSpots.py:919: noone ==> no one data/pbsuite-15.8.24+dfsg/debian/patches/2to3.patch:840: Finshed ==> Finished data/pbsuite-15.8.24+dfsg/debian/patches/2to3.patch:1553: betwen ==> between data/pbsuite-15.8.24+dfsg/debian/patches/2to3.patch:1555: betwen ==> between data/pbsuite-15.8.24+dfsg/debian/patches/fix_py3.patch:58: depricated ==> deprecated data/pbsuite-15.8.24+dfsg/.pc/intervaltree-import-statement.patch/pbsuite/honey/ComplexResolver.py:259: betwen ==> between data/pbsuite-15.8.24+dfsg/.pc/intervaltree-import-statement.patch/pbsuite/honey/ComplexResolver.py:379: upto ==> up to data/pbsuite-15.8.24+dfsg/.pc/intervaltree-import-statement.patch/pbsuite/honey/ComplexResolver.py:397: occurance ==> occurrence data/pbsuite-15.8.24+dfsg/.pc/fix-shebang-lines.patch/pbsuite/utils/mapStats.py:76: alignemnt ==> alignment data/pbsuite-15.8.24+dfsg/.pc/fix-shebang-lines.patch/pbsuite/utils/summarizeAssembly.py:227: betwen ==> between data/pbsuite-15.8.24+dfsg/.pc/fix-shebang-lines.patch/pbsuite/banana/MakeOverlapTable.py:18: Depricated ==> Deprecated data/pbsuite-15.8.24+dfsg/.pc/fix-shebang-lines.patch/pbsuite/banana/OLCAssembly.py:17: transparcency ==> transparency data/pbsuite-15.8.24+dfsg/.pc/fix-shebang-lines.patch/pbsuite/banana/OLCAssembly.py:65: ouput ==> output data/pbsuite-15.8.24+dfsg/.pc/fix-shebang-lines.patch/pbsuite/banana/OLCAssembly.py:211: tigger ==> trigger data/pbsuite-15.8.24+dfsg/.pc/fix-shebang-lines.patch/pbsuite/banana/OLCAssembly.py:242: tigger ==> trigger data/pbsuite-15.8.24+dfsg/.pc/fix-shebang-lines.patch/pbsuite/banana/Polish.py:221: flie ==> file data/pbsuite-15.8.24+dfsg/.pc/fix-shebang-lines.patch/pbsuite/honey/ComplexResolver.py:259: betwen ==> between data/pbsuite-15.8.24+dfsg/.pc/fix-shebang-lines.patch/pbsuite/honey/ComplexResolver.py:379: upto ==> up to data/pbsuite-15.8.24+dfsg/.pc/fix-shebang-lines.patch/pbsuite/honey/ComplexResolver.py:397: occurance ==> occurrence data/pbsuite-15.8.24+dfsg/.pc/fix-shebang-lines.patch/pbsuite/honey/Force.py:23: upto ==> up to data/pbsuite-15.8.24+dfsg/.pc/fix-shebang-lines.patch/pbsuite/honey/Force.py:299: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/.pc/fix-shebang-lines.patch/pbsuite/honey/Force.py:301: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/.pc/fix-shebang-lines.patch/pbsuite/honey/Force.py:302: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/.pc/fix-shebang-lines.patch/pbsuite/honey/Force.py:302: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/.pc/fix-shebang-lines.patch/pbsuite/honey/Force.py:303: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/.pc/fix-shebang-lines.patch/pbsuite/honey/Force.py:306: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/.pc/fix-shebang-lines.patch/pbsuite/honey/Force.py:308: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/.pc/fix-shebang-lines.patch/pbsuite/honey/Force.py:309: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/.pc/fix-shebang-lines.patch/pbsuite/honey/Force.py:309: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/.pc/fix-shebang-lines.patch/pbsuite/honey/Force.py:310: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/.pc/fix-shebang-lines.patch/pbsuite/honey/Force.py:336: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/.pc/fix-shebang-lines.patch/pbsuite/honey/Force.py:339: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/.pc/fix-shebang-lines.patch/pbsuite/honey/Force.py:394: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/.pc/fix-shebang-lines.patch/pbsuite/honey/Force.py:401: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/.pc/fix-shebang-lines.patch/pbsuite/honey/Force.py:430: subraction ==> subtraction data/pbsuite-15.8.24+dfsg/.pc/fix-shebang-lines.patch/pbsuite/honey/Force.py:461: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/.pc/fix-shebang-lines.patch/pbsuite/honey/Force.py:463: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/.pc/fix-shebang-lines.patch/pbsuite/honey/Force.py:464: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/.pc/fix-shebang-lines.patch/pbsuite/honey/Force.py:464: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/.pc/fix-shebang-lines.patch/pbsuite/honey/Force.py:468: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/.pc/fix-shebang-lines.patch/pbsuite/honey/Force.py:634: outputing ==> outputting data/pbsuite-15.8.24+dfsg/.pc/fix-shebang-lines.patch/pbsuite/honey/HSpots.py:278: Coverge ==> Coverage data/pbsuite-15.8.24+dfsg/.pc/fix-shebang-lines.patch/pbsuite/honey/HSpots.py:423: Ouput ==> Output data/pbsuite-15.8.24+dfsg/.pc/fix-shebang-lines.patch/pbsuite/honey/HSpots.py:556: depricated ==> deprecated data/pbsuite-15.8.24+dfsg/.pc/fix-shebang-lines.patch/pbsuite/honey/HSpots.py:826: incase ==> in case data/pbsuite-15.8.24+dfsg/.pc/fix-shebang-lines.patch/pbsuite/honey/HSpots.py:919: noone ==> no one data/pbsuite-15.8.24+dfsg/.pc/fix-shebang-lines.patch/pbsuite/honey/HSpots.pyx:465: noone ==> no one data/pbsuite-15.8.24+dfsg/.pc/fix-shebang-lines.patch/pbsuite/honey/HSpots.pyx:623: Coverge ==> Coverage data/pbsuite-15.8.24+dfsg/.pc/fix-shebang-lines.patch/pbsuite/honey/HSpots.pyx:717: expectaions ==> expectations data/pbsuite-15.8.24+dfsg/.pc/fix-shebang-lines.patch/pbsuite/honey/HSpots.pyx:752: DEPRICATED ==> DEPRECATED data/pbsuite-15.8.24+dfsg/.pc/fix-shebang-lines.patch/pbsuite/honey/HSpots.pyx:893: doesnt ==> doesn't, does not data/pbsuite-15.8.24+dfsg/.pc/fix-shebang-lines.patch/pbsuite/honey/HSpots.pyx:947: Kernals ==> Kernels data/pbsuite-15.8.24+dfsg/.pc/fix-shebang-lines.patch/pbsuite/honey/TGraf.py:648: ambigous ==> ambiguous data/pbsuite-15.8.24+dfsg/.pc/fix-shebang-lines.patch/pbsuite/honey/bakH.py:260: Coverge ==> Coverage data/pbsuite-15.8.24+dfsg/.pc/fix-shebang-lines.patch/pbsuite/honey/bakH.py:417: Ouput ==> Output data/pbsuite-15.8.24+dfsg/.pc/fix-shebang-lines.patch/pbsuite/honey/bakH.py:545: depricated ==> deprecated data/pbsuite-15.8.24+dfsg/.pc/fix-shebang-lines.patch/pbsuite/honey/bakH.py:819: incase ==> in case data/pbsuite-15.8.24+dfsg/.pc/fix-shebang-lines.patch/pbsuite/honey/bakH.py:907: noone ==> no one data/pbsuite-15.8.24+dfsg/.pc/fix-shebang-lines.patch/pbsuite/honey/bampie.py:156: upto ==> up to data/pbsuite-15.8.24+dfsg/.pc/fix-shebang-lines.patch/pbsuite/honey/massivePhrap.py:131: retreived ==> retrieved data/pbsuite-15.8.24+dfsg/.pc/fix-shebang-lines.patch/pbsuite/honey/realign.py:172: jsut ==> just data/pbsuite-15.8.24+dfsg/.pc/fix-shebang-lines.patch/pbsuite/honey/recallSpots.py:39: expectaions ==> expectations data/pbsuite-15.8.24+dfsg/.pc/fix-shebang-lines.patch/pbsuite/honey/spotH5Merge.py:7: multple ==> multiple data/pbsuite-15.8.24+dfsg/.pc/fix-shebang-lines.patch/pbsuite/jelly/Assembly.py:780: paramters ==> parameters data/pbsuite-15.8.24+dfsg/.pc/fix-shebang-lines.patch/pbsuite/jelly/Collection.py:303: filpped ==> flipped data/pbsuite-15.8.24+dfsg/.pc/fix-shebang-lines.patch/pbsuite/jelly/Collection.py:747: Filps ==> Flips data/pbsuite-15.8.24+dfsg/.pc/fix-shebang-lines.patch/pbsuite/jelly/Collection.py:767: filp ==> flip data/pbsuite-15.8.24+dfsg/.pc/fix-shebang-lines.patch/pbsuite/jelly/Collection.py:858: filp ==> flip data/pbsuite-15.8.24+dfsg/.pc/fix-shebang-lines.patch/pbsuite/jelly/Extraction.py:213: Finshed ==> Finished data/pbsuite-15.8.24+dfsg/.pc/fix-shebang-lines.patch/pbsuite/jelly/Extraction.py:255: insufficent ==> insufficient data/pbsuite-15.8.24+dfsg/.pc/fix-shebang-lines.patch/pbsuite/jelly/Jelly.py:97: specifiy ==> specify data/pbsuite-15.8.24+dfsg/.pc/fix-shebang-lines.patch/pbsuite/jelly/Setup.py:115: prevEnd ==> prevent data/pbsuite-15.8.24+dfsg/.pc/fix-shebang-lines.patch/pbsuite/jelly/Setup.py:118: prevEnd ==> prevent data/pbsuite-15.8.24+dfsg/.pc/fix-shebang-lines.patch/pbsuite/jelly/Setup.py:131: prevEnd ==> prevent data/pbsuite-15.8.24+dfsg/.pc/fix-shebang-lines.patch/pbsuite/jelly/Support.py:148: apropriate ==> appropriate data/pbsuite-15.8.24+dfsg/.pc/fix-shebang-lines.patch/pbsuite/jelly/Support.py:266: candiate ==> candidate data/pbsuite-15.8.24+dfsg/.pc/fix-shebang-lines.patch/pbsuite/jelly/Support.py:398: arbiturarily ==> arbitrarily data/pbsuite-15.8.24+dfsg/.pc/fix-shebang-lines.patch/pbsuite/jelly/Support.py:639: spport ==> support data/pbsuite-15.8.24+dfsg/.pc/fix-shebang-lines.patch/pbsuite/jelly/m4pie.py:99: upto ==> up to data/pbsuite-15.8.24+dfsg/.pc/blasr-5.patch/pbsuite/banana/Polish.py:221: flie ==> file data/pbsuite-15.8.24+dfsg/.pc/blasr-5.patch/pbsuite/banana/OLCAssembly.py:17: transparcency ==> transparency data/pbsuite-15.8.24+dfsg/.pc/blasr-5.patch/pbsuite/banana/OLCAssembly.py:65: ouput ==> output data/pbsuite-15.8.24+dfsg/.pc/blasr-5.patch/pbsuite/banana/OLCAssembly.py:211: tigger ==> trigger data/pbsuite-15.8.24+dfsg/.pc/blasr-5.patch/pbsuite/banana/OLCAssembly.py:242: tigger ==> trigger data/pbsuite-15.8.24+dfsg/.pc/blasr-5.patch/pbsuite/jelly/Assembly.py:780: paramters ==> parameters data/pbsuite-15.8.24+dfsg/.pc/blasr-5.patch/pbsuite/jelly/m4pie.py:99: upto ==> up to data/pbsuite-15.8.24+dfsg/.pc/blasr-5.patch/pbsuite/honey/HSpots.pyx:465: noone ==> no one data/pbsuite-15.8.24+dfsg/.pc/blasr-5.patch/pbsuite/honey/HSpots.pyx:623: Coverge ==> Coverage data/pbsuite-15.8.24+dfsg/.pc/blasr-5.patch/pbsuite/honey/HSpots.pyx:717: expectaions ==> expectations data/pbsuite-15.8.24+dfsg/.pc/blasr-5.patch/pbsuite/honey/HSpots.pyx:752: DEPRICATED ==> DEPRECATED data/pbsuite-15.8.24+dfsg/.pc/blasr-5.patch/pbsuite/honey/HSpots.pyx:893: doesnt ==> doesn't, does not data/pbsuite-15.8.24+dfsg/.pc/blasr-5.patch/pbsuite/honey/HSpots.pyx:947: Kernals ==> Kernels data/pbsuite-15.8.24+dfsg/.pc/blasr-5.patch/pbsuite/honey/HSpots.py:278: Coverge ==> Coverage data/pbsuite-15.8.24+dfsg/.pc/blasr-5.patch/pbsuite/honey/HSpots.py:423: Ouput ==> Output data/pbsuite-15.8.24+dfsg/.pc/blasr-5.patch/pbsuite/honey/HSpots.py:556: depricated ==> deprecated data/pbsuite-15.8.24+dfsg/.pc/blasr-5.patch/pbsuite/honey/HSpots.py:826: incase ==> in case data/pbsuite-15.8.24+dfsg/.pc/blasr-5.patch/pbsuite/honey/HSpots.py:919: noone ==> no one data/pbsuite-15.8.24+dfsg/.pc/blasr-5.patch/pbsuite/honey/bakH.py:260: Coverge ==> Coverage data/pbsuite-15.8.24+dfsg/.pc/blasr-5.patch/pbsuite/honey/bakH.py:417: Ouput ==> Output data/pbsuite-15.8.24+dfsg/.pc/blasr-5.patch/pbsuite/honey/bakH.py:545: depricated ==> deprecated data/pbsuite-15.8.24+dfsg/.pc/blasr-5.patch/pbsuite/honey/bakH.py:819: incase ==> in case data/pbsuite-15.8.24+dfsg/.pc/blasr-5.patch/pbsuite/honey/bakH.py:907: noone ==> no one data/pbsuite-15.8.24+dfsg/.pc/blasr-5.patch/pbsuite/honey/bampie.py:156: upto ==> up to data/pbsuite-15.8.24+dfsg/.pc/blasr-5.patch/pbsuite/honey/Valid.py:74: Continuting ==> Continuing data/pbsuite-15.8.24+dfsg/.pc/intermediate-reads-files.patch/pbsuite/honey/bampie.py:156: upto ==> up to data/pbsuite-15.8.24+dfsg/.pc/intermediate-reads-files.patch/pbsuite/jelly/m4pie.py:99: upto ==> up to data/pbsuite-15.8.24+dfsg/.pc/2to3.patch/pbsuite/banana/MakeOverlapTable.py:18: Depricated ==> Deprecated data/pbsuite-15.8.24+dfsg/.pc/2to3.patch/pbsuite/banana/OLCAssembly.py:17: transparcency ==> transparency data/pbsuite-15.8.24+dfsg/.pc/2to3.patch/pbsuite/banana/OLCAssembly.py:65: ouput ==> output data/pbsuite-15.8.24+dfsg/.pc/2to3.patch/pbsuite/banana/OLCAssembly.py:211: tigger ==> trigger data/pbsuite-15.8.24+dfsg/.pc/2to3.patch/pbsuite/banana/OLCAssembly.py:242: tigger ==> trigger data/pbsuite-15.8.24+dfsg/.pc/2to3.patch/pbsuite/banana/Polish.py:221: flie ==> file data/pbsuite-15.8.24+dfsg/.pc/2to3.patch/pbsuite/honey/Force.py:23: upto ==> up to data/pbsuite-15.8.24+dfsg/.pc/2to3.patch/pbsuite/honey/Force.py:299: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/.pc/2to3.patch/pbsuite/honey/Force.py:301: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/.pc/2to3.patch/pbsuite/honey/Force.py:302: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/.pc/2to3.patch/pbsuite/honey/Force.py:302: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/.pc/2to3.patch/pbsuite/honey/Force.py:303: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/.pc/2to3.patch/pbsuite/honey/Force.py:306: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/.pc/2to3.patch/pbsuite/honey/Force.py:308: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/.pc/2to3.patch/pbsuite/honey/Force.py:309: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/.pc/2to3.patch/pbsuite/honey/Force.py:309: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/.pc/2to3.patch/pbsuite/honey/Force.py:310: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/.pc/2to3.patch/pbsuite/honey/Force.py:336: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/.pc/2to3.patch/pbsuite/honey/Force.py:339: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/.pc/2to3.patch/pbsuite/honey/Force.py:394: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/.pc/2to3.patch/pbsuite/honey/Force.py:401: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/.pc/2to3.patch/pbsuite/honey/Force.py:430: subraction ==> subtraction data/pbsuite-15.8.24+dfsg/.pc/2to3.patch/pbsuite/honey/Force.py:461: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/.pc/2to3.patch/pbsuite/honey/Force.py:463: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/.pc/2to3.patch/pbsuite/honey/Force.py:464: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/.pc/2to3.patch/pbsuite/honey/Force.py:464: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/.pc/2to3.patch/pbsuite/honey/Force.py:468: fetchS ==> fetches data/pbsuite-15.8.24+dfsg/.pc/2to3.patch/pbsuite/honey/Force.py:634: outputing ==> outputting data/pbsuite-15.8.24+dfsg/.pc/2to3.patch/pbsuite/honey/HSpots.py:278: Coverge ==> Coverage data/pbsuite-15.8.24+dfsg/.pc/2to3.patch/pbsuite/honey/HSpots.py:423: Ouput ==> Output data/pbsuite-15.8.24+dfsg/.pc/2to3.patch/pbsuite/honey/HSpots.py:556: depricated ==> deprecated data/pbsuite-15.8.24+dfsg/.pc/2to3.patch/pbsuite/honey/HSpots.py:826: incase ==> in case data/pbsuite-15.8.24+dfsg/.pc/2to3.patch/pbsuite/honey/HSpots.py:919: noone ==> no one data/pbsuite-15.8.24+dfsg/.pc/2to3.patch/pbsuite/honey/TGraf.py:648: ambigous ==> ambiguous data/pbsuite-15.8.24+dfsg/.pc/2to3.patch/pbsuite/honey/Valid.py:74: Continuting ==> Continuing data/pbsuite-15.8.24+dfsg/.pc/2to3.patch/pbsuite/honey/bakH.py:260: Coverge ==> Coverage data/pbsuite-15.8.24+dfsg/.pc/2to3.patch/pbsuite/honey/bakH.py:417: Ouput ==> Output data/pbsuite-15.8.24+dfsg/.pc/2to3.patch/pbsuite/honey/bakH.py:545: depricated ==> deprecated data/pbsuite-15.8.24+dfsg/.pc/2to3.patch/pbsuite/honey/bakH.py:819: incase ==> in case data/pbsuite-15.8.24+dfsg/.pc/2to3.patch/pbsuite/honey/bakH.py:907: noone ==> no one data/pbsuite-15.8.24+dfsg/.pc/2to3.patch/pbsuite/honey/bampie.py:156: upto ==> up to data/pbsuite-15.8.24+dfsg/.pc/2to3.patch/pbsuite/honey/massivePhrap.py:131: retreived ==> retrieved data/pbsuite-15.8.24+dfsg/.pc/2to3.patch/pbsuite/honey/realign.py:172: jsut ==> just data/pbsuite-15.8.24+dfsg/.pc/2to3.patch/pbsuite/honey/recallSpots.py:39: expectaions ==> expectations data/pbsuite-15.8.24+dfsg/.pc/2to3.patch/pbsuite/honey/spotH5Merge.py:7: multple ==> multiple data/pbsuite-15.8.24+dfsg/.pc/2to3.patch/pbsuite/jelly/Assembly.py:780: paramters ==> parameters data/pbsuite-15.8.24+dfsg/.pc/2to3.patch/pbsuite/jelly/Collection.py:303: filpped ==> flipped data/pbsuite-15.8.24+dfsg/.pc/2to3.patch/pbsuite/jelly/Collection.py:747: Filps ==> Flips data/pbsuite-15.8.24+dfsg/.pc/2to3.patch/pbsuite/jelly/Collection.py:767: filp ==> flip data/pbsuite-15.8.24+dfsg/.pc/2to3.patch/pbsuite/jelly/Collection.py:858: filp ==> flip data/pbsuite-15.8.24+dfsg/.pc/2to3.patch/pbsuite/jelly/Extraction.py:213: Finshed ==> Finished data/pbsuite-15.8.24+dfsg/.pc/2to3.patch/pbsuite/jelly/Extraction.py:255: insufficent ==> insufficient data/pbsuite-15.8.24+dfsg/.pc/2to3.patch/pbsuite/jelly/Jelly.py:97: specifiy ==> specify data/pbsuite-15.8.24+dfsg/.pc/2to3.patch/pbsuite/jelly/Support.py:148: apropriate ==> appropriate data/pbsuite-15.8.24+dfsg/.pc/2to3.patch/pbsuite/jelly/Support.py:266: candiate ==> candidate data/pbsuite-15.8.24+dfsg/.pc/2to3.patch/pbsuite/jelly/Support.py:398: arbiturarily ==> arbitrarily data/pbsuite-15.8.24+dfsg/.pc/2to3.patch/pbsuite/jelly/Support.py:639: spport ==> support data/pbsuite-15.8.24+dfsg/.pc/2to3.patch/pbsuite/jelly/m4pie.py:99: upto ==> up to data/pbsuite-15.8.24+dfsg/.pc/2to3.patch/pbsuite/utils/CommandRunner.py:99: executeable ==> executable data/pbsuite-15.8.24+dfsg/.pc/2to3.patch/pbsuite/utils/FileHandlers.py:204: returing ==> returning data/pbsuite-15.8.24+dfsg/.pc/2to3.patch/pbsuite/utils/FileHandlers.py:372: programatically ==> programmatically data/pbsuite-15.8.24+dfsg/.pc/2to3.patch/pbsuite/utils/FileHandlers.py:469: efficently ==> efficiently data/pbsuite-15.8.24+dfsg/.pc/2to3.patch/pbsuite/utils/mapStats.py:76: alignemnt ==> alignment data/pbsuite-15.8.24+dfsg/.pc/2to3.patch/pbsuite/utils/summarizeAssembly.py:227: betwen ==> between data/pbsuite-15.8.24+dfsg/.pc/fix_py3.patch/pbsuite/honey/TGraf.py:648: ambigous ==> ambiguous data/pbsuite-15.8.24+dfsg/.pc/fix_py3.patch/pbsuite/honey/HSpots.py:278: Coverge ==> Coverage data/pbsuite-15.8.24+dfsg/.pc/fix_py3.patch/pbsuite/honey/HSpots.py:423: Ouput ==> Output data/pbsuite-15.8.24+dfsg/.pc/fix_py3.patch/pbsuite/honey/HSpots.py:556: depricated ==> deprecated data/pbsuite-15.8.24+dfsg/.pc/fix_py3.patch/pbsuite/honey/HSpots.py:826: incase ==> in case data/pbsuite-15.8.24+dfsg/.pc/fix_py3.patch/pbsuite/honey/HSpots.py:919: noone ==> no one data/pbsuite-15.8.24+dfsg/.pc/fix_py3.patch/pbsuite/utils/FileHandlers.py:204: returing ==> returning data/pbsuite-15.8.24+dfsg/.pc/fix_py3.patch/pbsuite/utils/FileHandlers.py:372: programatically ==> programmatically data/pbsuite-15.8.24+dfsg/.pc/fix_py3.patch/pbsuite/utils/FileHandlers.py:468: efficently ==> efficiently