data/r-bioc-chemminer-3.42.0+dfsg/NAMESPACE:95: utilites ==> utilities data/r-bioc-chemminer-3.42.0+dfsg/R/AllClasses.R:306: emtpy ==> empty data/r-bioc-chemminer-3.42.0+dfsg/R/AllClasses.R:322: tranlate ==> translate data/r-bioc-chemminer-3.42.0+dfsg/R/AllClasses.R:385: emtpy ==> empty data/r-bioc-chemminer-3.42.0+dfsg/R/AllClasses.R:1659: Duplates ==> Duplicates data/r-bioc-chemminer-3.42.0+dfsg/R/AllClasses.R:1924: Te ==> The, be, we data/r-bioc-chemminer-3.42.0+dfsg/R/AllClasses.R:2567: transfromations ==> transformations data/r-bioc-chemminer-3.42.0+dfsg/R/ChemmineR.R:97: ans ==> and data/r-bioc-chemminer-3.42.0+dfsg/R/ChemmineR.R:98: ans ==> and data/r-bioc-chemminer-3.42.0+dfsg/R/ChemmineR.R:99: ans ==> and data/r-bioc-chemminer-3.42.0+dfsg/R/ChemmineR.R:191: ans ==> and data/r-bioc-chemminer-3.42.0+dfsg/R/ChemmineR.R:192: ans ==> and data/r-bioc-chemminer-3.42.0+dfsg/R/ChemmineR.R:194: ans ==> and data/r-bioc-chemminer-3.42.0+dfsg/R/ChemmineR.R:195: ans ==> and data/r-bioc-chemminer-3.42.0+dfsg/R/cluster.R:309: compatability ==> compatibility data/r-bioc-chemminer-3.42.0+dfsg/R/cluster.R:351: leaded ==> led, lead data/r-bioc-chemminer-3.42.0+dfsg/R/compound_db.R:32: createing ==> creating data/r-bioc-chemminer-3.42.0+dfsg/R/compound_db.R:96: definiton ==> definition data/r-bioc-chemminer-3.42.0+dfsg/R/compound_db.R:283: guarentee ==> guarantee data/r-bioc-chemminer-3.42.0+dfsg/R/compound_db.R:283: consistant ==> consistent data/r-bioc-chemminer-3.42.0+dfsg/R/compound_db.R:415: existance ==> existence data/r-bioc-chemminer-3.42.0+dfsg/R/compound_db.R:544: recieved ==> received data/r-bioc-chemminer-3.42.0+dfsg/R/compound_db.R:624: suppported ==> supported data/r-bioc-chemminer-3.42.0+dfsg/R/compound_db.R:833: statment ==> statement data/r-bioc-chemminer-3.42.0+dfsg/R/draw_sdf.R:242: minumum ==> minimum data/r-bioc-chemminer-3.42.0+dfsg/R/postgresql.R:41: existance ==> existence data/r-bioc-chemminer-3.42.0+dfsg/R/pvalue.R:13: varience ==> variance data/r-bioc-chemminer-3.42.0+dfsg/R/pvalue.R:16: varience ==> variance data/r-bioc-chemminer-3.42.0+dfsg/R/pvalue.R:51: varience ==> variance data/r-bioc-chemminer-3.42.0+dfsg/R/pvalue.R:55: varience ==> variance data/r-bioc-chemminer-3.42.0+dfsg/R/pvalue.R:55: varience ==> variance data/r-bioc-chemminer-3.42.0+dfsg/R/pvalue.R:56: varience ==> variance data/r-bioc-chemminer-3.42.0+dfsg/R/pvalue.R:57: varience ==> variance data/r-bioc-chemminer-3.42.0+dfsg/R/pvalue.R:71: avaliable ==> available data/r-bioc-chemminer-3.42.0+dfsg/R/pvalue.R:80: varience ==> variance data/r-bioc-chemminer-3.42.0+dfsg/R/pvalue.R:80: varience ==> variance data/r-bioc-chemminer-3.42.0+dfsg/R/pvalue.R:85: varience ==> variance data/r-bioc-chemminer-3.42.0+dfsg/R/sim.R:64: Te ==> The, be, we data/r-bioc-chemminer-3.42.0+dfsg/R/sim.R:68: Ba ==> By, be data/r-bioc-chemminer-3.42.0+dfsg/R/sim.R:72: Nd ==> And, 2nd data/r-bioc-chemminer-3.42.0+dfsg/R/sim.R:134: compatability ==> compatibility data/r-bioc-chemminer-3.42.0+dfsg/R/sim.R:194: compatability ==> compatibility data/r-bioc-chemminer-3.42.0+dfsg/R/sim.R:267: compatability ==> compatibility data/r-bioc-chemminer-3.42.0+dfsg/R/sim.R:315: correponding ==> corresponding data/r-bioc-chemminer-3.42.0+dfsg/R/sim.R:340: compatability ==> compatibility data/r-bioc-chemminer-3.42.0+dfsg/R/sim.R:363: occurence ==> occurrence data/r-bioc-chemminer-3.42.0+dfsg/R/sim.R:754: avaliable ==> available data/r-bioc-chemminer-3.42.0+dfsg/R/sim.R:763: varience ==> variance data/r-bioc-chemminer-3.42.0+dfsg/R/sim.R:763: varience ==> variance data/r-bioc-chemminer-3.42.0+dfsg/R/sim.R:770: varience ==> variance data/r-bioc-chemminer-3.42.0+dfsg/data/atomprop.txt:56: Te ==> The, be, we data/r-bioc-chemminer-3.42.0+dfsg/data/atomprop.txt:60: Ba ==> By, be data/r-bioc-chemminer-3.42.0+dfsg/data/atomprop.txt:64: Nd ==> And, 2nd data/r-bioc-chemminer-3.42.0+dfsg/inst/NEWS.Rd:59: availible ==> available data/r-bioc-chemminer-3.42.0+dfsg/inst/doc/ChemmineR.Rmd:978: dissconnected ==> disconnected data/r-bioc-chemminer-3.42.0+dfsg/inst/doc/ChemmineR.Rmd:1104: sting ==> string data/r-bioc-chemminer-3.42.0+dfsg/inst/doc/ChemmineR.Rmd:2352: availiable ==> available data/r-bioc-chemminer-3.42.0+dfsg/inst/unitTests/test_general.R:180: colum ==> column data/r-bioc-chemminer-3.42.0+dfsg/man/AP-class.Rd:64: converst ==> convert data/r-bioc-chemminer-3.42.0+dfsg/man/APset-class.Rd:88: converst ==> convert data/r-bioc-chemminer-3.42.0+dfsg/man/ExtSDF-class.Rd:13: curretnly ==> currently data/r-bioc-chemminer-3.42.0+dfsg/man/addDescriptorType.Rd:8: parrallel ==> parallel data/r-bioc-chemminer-3.42.0+dfsg/man/addDescriptorType.Rd:9: defintion ==> definition data/r-bioc-chemminer-3.42.0+dfsg/man/apset2descdb.Rd:60: converst ==> convert data/r-bioc-chemminer-3.42.0+dfsg/man/canonicalize.Rd:7: implimentation ==> implementation data/r-bioc-chemminer-3.42.0+dfsg/man/cluster.sizestat.Rd:19: indecies ==> indices data/r-bioc-chemminer-3.42.0+dfsg/man/cluster.visualize.Rd:11: desciptor ==> descriptor data/r-bioc-chemminer-3.42.0+dfsg/man/cluster.visualize.Rd:19: supress ==> suppress data/r-bioc-chemminer-3.42.0+dfsg/man/cmp.cluster.Rd:17: desciptor ==> descriptor data/r-bioc-chemminer-3.42.0+dfsg/man/cmp.duplicated.Rd:13: desciptor ==> descriptor data/r-bioc-chemminer-3.42.0+dfsg/man/cmp.parse.Rd:24: Datbase ==> Database data/r-bioc-chemminer-3.42.0+dfsg/man/cmp.parse.Rd:71: optinally ==> optionally data/r-bioc-chemminer-3.42.0+dfsg/man/cmp.similarity.Rd:22: reprsents ==> represents data/r-bioc-chemminer-3.42.0+dfsg/man/connections.Rd:28: ether ==> either data/r-bioc-chemminer-3.42.0+dfsg/man/db.subset.Rd:6: indecies ==> indices data/r-bioc-chemminer-3.42.0+dfsg/man/db.subset.Rd:7: indecies ==> indices data/r-bioc-chemminer-3.42.0+dfsg/man/db.subset.Rd:15: indecies ==> indices data/r-bioc-chemminer-3.42.0+dfsg/man/dbTransaction.Rd:24: commiting ==> committing data/r-bioc-chemminer-3.42.0+dfsg/man/desc2fp.Rd:14: classe ==> class, classes data/r-bioc-chemminer-3.42.0+dfsg/man/fpSim.Rd:38: devision ==> division data/r-bioc-chemminer-3.42.0+dfsg/man/genParameters.Rd:7: caluclating ==> calculating data/r-bioc-chemminer-3.42.0+dfsg/man/getCompoundFeatures.Rd:24: seperated ==> separated data/r-bioc-chemminer-3.42.0+dfsg/man/jarvisPatrick_c.Rd:28: yeilds ==> yields data/r-bioc-chemminer-3.42.0+dfsg/man/jarvisPatrick_c.Rd:28: yeilds ==> yields data/r-bioc-chemminer-3.42.0+dfsg/man/loadSdf.Rd:24: formated ==> formatted data/r-bioc-chemminer-3.42.0+dfsg/man/loadSdf.Rd:27: formated ==> formatted data/r-bioc-chemminer-3.42.0+dfsg/man/read.SDFset.Rd:42: defintion ==> definition data/r-bioc-chemminer-3.42.0+dfsg/man/read.SDFstr.Rd:24: defintion ==> definition data/r-bioc-chemminer-3.42.0+dfsg/man/sdf.subset.Rd:3: segements ==> segments data/r-bioc-chemminer-3.42.0+dfsg/man/sdf.subset.Rd:16: indecies ==> indices data/r-bioc-chemminer-3.42.0+dfsg/man/sdf.subset.Rd:45: containt ==> contain, content data/r-bioc-chemminer-3.42.0+dfsg/man/sdf.visualize.Rd:6: futher ==> further data/r-bioc-chemminer-3.42.0+dfsg/man/sdf2ap.Rd:68: converst ==> convert data/r-bioc-chemminer-3.42.0+dfsg/man/selectInBatches.Rd:25: indicies ==> indices data/r-bioc-chemminer-3.42.0+dfsg/man/selectInBatches.Rd:28: indicies ==> indices data/r-bioc-chemminer-3.42.0+dfsg/src/DisjointSets.cpp:4: Implementaton ==> Implementation data/r-bioc-chemminer-3.42.0+dfsg/src/DisjointSets.cpp:64: invokations ==> invocations data/r-bioc-chemminer-3.42.0+dfsg/src/DisjointSets.h:4: Implementaton ==> Implementation data/r-bioc-chemminer-3.42.0+dfsg/src/cluster.cc:350: neightbors ==> neighbors data/r-bioc-chemminer-3.42.0+dfsg/src/desc.h:92: Te ==> The, be, we data/r-bioc-chemminer-3.42.0+dfsg/src/desc.h:96: Ba ==> By, be data/r-bioc-chemminer-3.42.0+dfsg/src/desc.h:100: Nd ==> And, 2nd data/r-bioc-chemminer-3.42.0+dfsg/src/fingerprints.cc:21: EUCLIDIAN ==> EUCLIDEAN data/r-bioc-chemminer-3.42.0+dfsg/src/fingerprints.cc:33: queryS ==> queries data/r-bioc-chemminer-3.42.0+dfsg/src/fingerprints.cc:35: queryS ==> queries data/r-bioc-chemminer-3.42.0+dfsg/src/fingerprints.cc:61: EUCLIDIAN ==> EUCLIDEAN data/r-bioc-chemminer-3.42.0+dfsg/src/r_wrap.cc:350: circularly ==> circular data/r-bioc-chemminer-3.42.0+dfsg/src/r_wrap.cc:354: circularly ==> circular data/r-bioc-chemminer-3.42.0+dfsg/src/r_wrap.cc:385: te ==> the, be, we data/r-bioc-chemminer-3.42.0+dfsg/src/r_wrap.cc:391: te ==> the, be, we data/r-bioc-chemminer-3.42.0+dfsg/src/r_wrap.cc:404: te ==> the, be, we data/r-bioc-chemminer-3.42.0+dfsg/src/r_wrap.cc:410: te ==> the, be, we data/r-bioc-chemminer-3.42.0+dfsg/src/r_wrap.cc:789: ans ==> and data/r-bioc-chemminer-3.42.0+dfsg/src/r_wrap.cc:798: ans ==> and data/r-bioc-chemminer-3.42.0+dfsg/src/r_wrap.cc:800: ans ==> and data/r-bioc-chemminer-3.42.0+dfsg/src/r_wrap.cc:804: ans ==> and data/r-bioc-chemminer-3.42.0+dfsg/src/r_wrap.cc:1643: staticly ==> statically data/r-bioc-chemminer-3.42.0+dfsg/src/r_wrap.cc:1728: interpeters ==> interpreters data/r-bioc-chemminer-3.42.0+dfsg/vignettes/ChemmineR.Rmd:978: dissconnected ==> disconnected data/r-bioc-chemminer-3.42.0+dfsg/vignettes/ChemmineR.Rmd:1104: sting ==> string data/r-bioc-chemminer-3.42.0+dfsg/vignettes/ChemmineR.Rmd:2352: availiable ==> available data/r-bioc-chemminer-3.42.0+dfsg/vignettes/ChemmineR.Rmd_bootstrap:916: dissconnected ==> disconnected data/r-bioc-chemminer-3.42.0+dfsg/vignettes/ChemmineR.Rmd_bootstrap:1038: sting ==> string data/r-bioc-chemminer-3.42.0+dfsg/vignettes/ChemmineR.Rmd_bootstrap:2243: availiable ==> available data/r-bioc-chemminer-3.42.0+dfsg/vignettes/html.template_bootstrap:28: ot ==> to, of, or