data/r-bioc-phyloseq-1.34.0+dfsg/NAMESPACE:15: tre ==> tree
data/r-bioc-phyloseq-1.34.0+dfsg/NAMESPACE:141: tre ==> tree
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:22: paramaters ==> parameters
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:96: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:115: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:124: ot ==> to, of, or
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:127: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:128: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:151: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:153: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:154: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:161: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:164: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:167: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:176: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:181: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:195: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:203: progresss ==> progress
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:258: otu ==> out
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:404: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:444: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:447: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:473: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:481: progresss ==> progress
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:492: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:529: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:533: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:534: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:536: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:543: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:613: charater ==> character
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:639: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:641: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:647: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:651: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:662: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:663: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:710: aligment ==> alignment
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:724: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:748: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:772: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:779: otu ==> out
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:784: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:807: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:822: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:822: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:822: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:823: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:824: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:829: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:930: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:987: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:994: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:1026: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:1027: useable ==> usable
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:1031: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:1039: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:1070: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:1107: useable ==> usable
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:1111: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:1144: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:1173: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:1175: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:1176: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:1177: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:1182: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:1263: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:1265: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:1283: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:1369: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:1396: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:1445: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:1549: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:1550: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:1550: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:1557: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:1563: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:1566: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:1616: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:1616: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:1639: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:1641: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:1642: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:1649: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:1652: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:1655: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:1664: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:1669: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:1684: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:1781: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:1869: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:1884: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:1896: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:1899: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:1974: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:1975: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:1978: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:2057: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:2204: chould ==> should, could
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:2212: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:2215: algortihm ==> algorithm
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:2240: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:2265: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:2276: progresss ==> progress
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:2298: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:2304: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:2306: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:2307: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:2311: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:2312: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:2312: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:2313: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:2314: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:2316: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:2322: algortihm ==> algorithm
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:2355: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:2368: progresss ==> progress
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:2414: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:2418: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:2419: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:2420: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/IO-methods.R:2421: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/allData.R:14: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/allData.R:123: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/allPackage.R:8: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/almostAllAccessors.R:343: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/assignment-methods.R:2: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/assignment-methods.R:23: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/assignment-methods.R:24: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/assignment-methods.R:99: occurr ==> occur
data/r-bioc-phyloseq-1.34.0+dfsg/R/assignment-methods.R:176: Asign ==> Assign
data/r-bioc-phyloseq-1.34.0+dfsg/R/assignment-methods.R:215: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/assignment-methods.R:256: argumet ==> argument
data/r-bioc-phyloseq-1.34.0+dfsg/R/assignment-methods.R:303: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/assignment-methods.R:344: argumet ==> argument
data/r-bioc-phyloseq-1.34.0+dfsg/R/deprecated_functions.R:20: tre ==> tree
data/r-bioc-phyloseq-1.34.0+dfsg/R/deprecated_functions.R:20: tre ==> tree
data/r-bioc-phyloseq-1.34.0+dfsg/R/deprecated_functions.R:21: tre ==> tree
data/r-bioc-phyloseq-1.34.0+dfsg/R/deprecated_functions.R:21: tre ==> tree
data/r-bioc-phyloseq-1.34.0+dfsg/R/deprecated_functions.R:55: tre ==> tree
data/r-bioc-phyloseq-1.34.0+dfsg/R/deprecated_functions.R:59: tre ==> tree
data/r-bioc-phyloseq-1.34.0+dfsg/R/deprecated_functions.R:97: tre ==> tree
data/r-bioc-phyloseq-1.34.0+dfsg/R/deprecated_functions.R:110: tre ==> tree
data/r-bioc-phyloseq-1.34.0+dfsg/R/distance-methods.R:104: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/distance-methods.R:106: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/distance-methods.R:122: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/distance-methods.R:123: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/distance-methods.R:129: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/distance-methods.R:129: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/distance-methods.R:129: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/distance-methods.R:132: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/distance-methods.R:132: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/distance-methods.R:132: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/distance-methods.R:136: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/distance-methods.R:136: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/distance-methods.R:137: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/distance-methods.R:158: diagnol ==> diagonal
data/r-bioc-phyloseq-1.34.0+dfsg/R/distance-methods.R:161: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/distance-methods.R:382: acheived ==> achieved
data/r-bioc-phyloseq-1.34.0+dfsg/R/distance-methods.R:567: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/distance-methods.R:581: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/distance-methods.R:582: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/distance-methods.R:582: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/distance-methods.R:584: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/distance-methods.R:584: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/distance-methods.R:586: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/distance-methods.R:587: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/distance-methods.R:588: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/distance-methods.R:588: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/distance-methods.R:601: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/distance-methods.R:611: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/distance-methods.R:639: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/distance-methods.R:640: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/distance-methods.R:662: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/distance-methods.R:662: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/extend_vegan.R:17: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/extend_vegan.R:18: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/extend_vegan.R:46: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/extend_vegan.R:210: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/extend_vegan.R:212: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/extend_vegan.R:213: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/extend_vegan.R:213: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/extend_vegan.R:238: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/extend_vegan.R:241: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/extend_vegan.R:244: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/extend_vegan.R:247: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/extend_vegan.R:250: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/extend_vegan.R:253: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/merge-methods.R:19: desribed ==> described
data/r-bioc-phyloseq-1.34.0+dfsg/R/merge-methods.R:31: desribed ==> described
data/r-bioc-phyloseq-1.34.0+dfsg/R/merge-methods.R:43: ommitted ==> omitted
data/r-bioc-phyloseq-1.34.0+dfsg/R/merge-methods.R:257: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/merge-methods.R:279: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/merge-methods.R:282: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/merge-methods.R:284: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/merge-methods.R:301: otu ==> out
data/r-bioc-phyloseq-1.34.0+dfsg/R/merge-methods.R:302: otu ==> out
data/r-bioc-phyloseq-1.34.0+dfsg/R/merge-methods.R:312: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/merge-methods.R:316: unmodifed ==> unmodified
data/r-bioc-phyloseq-1.34.0+dfsg/R/merge-methods.R:319: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/merge-methods.R:328: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/merge-methods.R:328: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/merge-methods.R:331: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/merge-methods.R:334: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/merge-methods.R:338: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/merge-methods.R:343: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/merge-methods.R:507: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/merge-methods.R:535: coercable ==> coercible
data/r-bioc-phyloseq-1.34.0+dfsg/R/merge-methods.R:537: coercable ==> coercible
data/r-bioc-phyloseq-1.34.0+dfsg/R/merge-methods.R:538: coercable ==> coercible
data/r-bioc-phyloseq-1.34.0+dfsg/R/multtest-wrapper.R:16: coercable ==> coercible
data/r-bioc-phyloseq-1.34.0+dfsg/R/network-methods.R:101: otu ==> out
data/r-bioc-phyloseq-1.34.0+dfsg/R/network-methods.R:102: asign ==> assign
data/r-bioc-phyloseq-1.34.0+dfsg/R/network-methods.R:129: asign ==> assign
data/r-bioc-phyloseq-1.34.0+dfsg/R/ordination-methods.R:83: arguemnts ==> arguments
data/r-bioc-phyloseq-1.34.0+dfsg/R/ordination-methods.R:276: Euclidian ==> Euclidean
data/r-bioc-phyloseq-1.34.0+dfsg/R/ordination-methods.R:332: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/ordination-methods.R:335: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/ordination-methods.R:336: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/ordination-methods.R:336: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/ordination-methods.R:336: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/ordination-methods.R:354: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/ordination-methods.R:379: contraining ==> constraining
data/r-bioc-phyloseq-1.34.0+dfsg/R/ordination-methods.R:415: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/ordination-methods.R:418: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/ordination-methods.R:435: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/ordination-methods.R:506: sord ==> sword, sore, sored, sawed, soared
data/r-bioc-phyloseq-1.34.0+dfsg/R/ordination-methods.R:508: sord ==> sword, sore, sored, sawed, soared
data/r-bioc-phyloseq-1.34.0+dfsg/R/ordination-methods.R:510: sord ==> sword, sore, sored, sawed, soared
data/r-bioc-phyloseq-1.34.0+dfsg/R/ordination-methods.R:511: sord ==> sword, sore, sored, sawed, soared
data/r-bioc-phyloseq-1.34.0+dfsg/R/ordination-methods.R:529: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/ordination-methods.R:633: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/ordination-methods.R:634: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/otuTable-class.R:5: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/otuTable-class.R:87: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/phyloseq-class.R:86: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/phyloseq-class.R:96: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/phyloseq-class.R:366: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/plot-methods.R:199: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/plot-methods.R:200: otu ==> out
data/r-bioc-phyloseq-1.34.0+dfsg/R/plot-methods.R:929: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/plot-methods.R:1007: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/plot-methods.R:1025: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/plot-methods.R:1151: curent ==> current
data/r-bioc-phyloseq-1.34.0+dfsg/R/plot-methods.R:1321: preforms ==> performs
data/r-bioc-phyloseq-1.34.0+dfsg/R/plot-methods.R:1396: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/plot-methods.R:1404: automtically ==> automatically
data/r-bioc-phyloseq-1.34.0+dfsg/R/plot-methods.R:1414: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/plot-methods.R:1415: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/plot-methods.R:1464: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/plot-methods.R:1509: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/plot-methods.R:1513: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/plot-methods.R:1515: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/plot-methods.R:1520: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/plot-methods.R:1521: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/plot-methods.R:1521: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/plot-methods.R:1527: otu ==> out
data/r-bioc-phyloseq-1.34.0+dfsg/R/plot-methods.R:1540: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/plot-methods.R:1542: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/plot-methods.R:1576: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/plot-methods.R:1754: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/plot-methods.R:1757: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/plot-methods.R:1757: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/plot-methods.R:1758: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/plot-methods.R:1760: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/plot-methods.R:1913: coercable ==> coercible
data/r-bioc-phyloseq-1.34.0+dfsg/R/plot-methods.R:2179: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/plot-methods.R:2182: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/plot-methods.R:2182: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/plot-methods.R:2183: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/plot-methods.R:2217: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/plot-methods.R:2220: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/plot-methods.R:2220: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/plot-methods.R:2222: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/plot-methods.R:2274: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/plot-methods.R:2277: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/plot-methods.R:2278: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/plot-methods.R:2280: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/plot-methods.R:2280: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/plot-methods.R:2285: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/plot-methods.R:2288: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/plot-methods.R:2290: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/plot-methods.R:2291: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/plot-methods.R:2294: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/plot-methods.R:2326: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/plot-methods.R:2327: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/plot-methods.R:2389: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/plot-methods.R:2436: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/plot-methods.R:2471: supercedes ==> supersedes
data/r-bioc-phyloseq-1.34.0+dfsg/R/plot-methods.R:2512: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/plot-methods.R:2560: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/plot-methods.R:2629: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/plot-methods.R:2630: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/plot-methods.R:2653: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/plot-methods.R:2653: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/plot-methods.R:2664: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/plot-methods.R:2664: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/plot-methods.R:2667: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/plot-methods.R:2667: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/plot-methods.R:2672: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/plot-methods.R:2699: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/plot-methods.R:2820: sord ==> sword, sore, sored, sawed, soared
data/r-bioc-phyloseq-1.34.0+dfsg/R/plot-methods.R:2822: sord ==> sword, sore, sored, sawed, soared
data/r-bioc-phyloseq-1.34.0+dfsg/R/plot-methods.R:2824: sord ==> sword, sore, sored, sawed, soared
data/r-bioc-phyloseq-1.34.0+dfsg/R/plot-methods.R:2825: sord ==> sword, sore, sored, sawed, soared
data/r-bioc-phyloseq-1.34.0+dfsg/R/show-methods.R:5: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/show-methods.R:50: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/taxonomyTable-class.R:89: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/transform_filter-methods.R:7: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/transform_filter-methods.R:74: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/transform_filter-methods.R:175: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/transform_filter-methods.R:193: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/transform_filter-methods.R:247: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/transform_filter-methods.R:251: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/transform_filter-methods.R:281: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/transform_filter-methods.R:415: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/transform_filter-methods.R:530: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/transform_filter-methods.R:822: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/transform_filter-methods.R:829: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/transform_filter-methods.R:837: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/transform_filter-methods.R:851: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/transform_filter-methods.R:861: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/transform_filter-methods.R:885: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/transform_filter-methods.R:968: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/transform_filter-methods.R:975: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/transform_filter-methods.R:978: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/transform_filter-methods.R:1016: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/transform_filter-methods.R:1017: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/transform_filter-methods.R:1019: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/transform_filter-methods.R:1020: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/transform_filter-methods.R:1020: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/transform_filter-methods.R:1023: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/transform_filter-methods.R:1023: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/transform_filter-methods.R:1025: ans ==> and
data/r-bioc-phyloseq-1.34.0+dfsg/R/transform_filter-methods.R:1025: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/transform_filter-methods.R:1027: ans ==> and
data/r-bioc-phyloseq-1.34.0+dfsg/R/transform_filter-methods.R:1032: ans ==> and
data/r-bioc-phyloseq-1.34.0+dfsg/R/transform_filter-methods.R:1034: ans ==> and
data/r-bioc-phyloseq-1.34.0+dfsg/R/validity-methods.R:33: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/validity-methods.R:37: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/R/validity-methods.R:104: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/inst/NEWS:105: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/inst/NEWS:107: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/inst/NEWS:247: contrained ==> contained, constrained
data/r-bioc-phyloseq-1.34.0+dfsg/inst/NEWS:264: pallette ==> palette
data/r-bioc-phyloseq-1.34.0+dfsg/inst/NEWS:275: Udpated ==> Updated
data/r-bioc-phyloseq-1.34.0+dfsg/inst/NEWS:496: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/inst/NEWS:575: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/inst/NEWS:598: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/inst/NEWS:746: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/inst/NEWS:1025: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/inst/NEWS:1034: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/inst/NEWS:1037: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/inst/doc/phyloseq-FAQ.R:28: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/inst/doc/phyloseq-FAQ.Rmd:114: ouput ==> output
data/r-bioc-phyloseq-1.34.0+dfsg/inst/doc/phyloseq-FAQ.Rmd:264: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/inst/doc/phyloseq-analysis.Rmd:115: overlayed ==> overlaid
data/r-bioc-phyloseq-1.34.0+dfsg/inst/doc/phyloseq-analysis.Rmd:147: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/inst/doc/phyloseq-analysis.Rmd:156: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/inst/doc/phyloseq-analysis.Rmd:156: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/inst/doc/phyloseq-analysis.Rmd:178: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/inst/doc/phyloseq-analysis.Rmd:178: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/inst/doc/phyloseq-analysis.Rmd:184: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/inst/doc/phyloseq-analysis.Rmd:184: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/inst/doc/phyloseq-analysis.Rmd:229: orginally ==> originally
data/r-bioc-phyloseq-1.34.0+dfsg/inst/doc/phyloseq-analysis.Rmd:461: Currrently ==> Currently
data/r-bioc-phyloseq-1.34.0+dfsg/inst/doc/phyloseq-analysis.Rmd:461: retreiving ==> retrieving
data/r-bioc-phyloseq-1.34.0+dfsg/inst/doc/phyloseq-basics.Rmd:70: build-in ==> built-in
data/r-bioc-phyloseq-1.34.0+dfsg/inst/doc/phyloseq-basics.Rmd:70: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/inst/doc/phyloseq-basics.Rmd:70: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/inst/doc/phyloseq-basics.Rmd:78: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/inst/doc/phyloseq-basics.Rmd:86: additonal ==> additional
data/r-bioc-phyloseq-1.34.0+dfsg/inst/doc/phyloseq-basics.Rmd:151: suppored ==> supported
data/r-bioc-phyloseq-1.34.0+dfsg/inst/doc/phyloseq-basics.Rmd:173: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/inst/doc/phyloseq-basics.Rmd:185: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/inst/doc/phyloseq-basics.Rmd:204: tre ==> tree
data/r-bioc-phyloseq-1.34.0+dfsg/inst/doc/phyloseq-basics.Rmd:211: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/inst/doc/phyloseq-basics.Rmd:241: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/inst/doc/phyloseq-basics.Rmd:248: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/inst/doc/phyloseq-basics.Rmd:256: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/inst/doc/phyloseq-basics.Rmd:256: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/inst/doc/phyloseq-basics.Rmd:261: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/inst/doc/phyloseq-basics.Rmd:279: aligment ==> alignment
data/r-bioc-phyloseq-1.34.0+dfsg/inst/doc/phyloseq-basics.Rmd:322: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/inst/doc/phyloseq-basics.Rmd:323: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/inst/doc/phyloseq-basics.Rmd:456: relavent ==> relevant
data/r-bioc-phyloseq-1.34.0+dfsg/inst/doc/phyloseq-basics.Rmd:482: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/inst/doc/phyloseq-basics.Rmd:482: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/inst/doc/phyloseq-basics.Rmd:540: analyis ==> analysis
data/r-bioc-phyloseq-1.34.0+dfsg/inst/doc/phyloseq-basics.Rmd:561: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/inst/doc/phyloseq-mixture-models.R:51: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/inst/doc/phyloseq-mixture-models.Rmd:65: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/inst/doc/phyloseq-mixture-models.Rmd:159: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/inst/doc/phyloseq-mixture-models.Rmd:167: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/inst/extdata/min_dense_otu_table.biom:5: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/inst/extdata/min_sparse_otu_table.biom:5: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/inst/extdata/rich_dense_otu_table.biom:5: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/inst/extdata/rich_sparse_otu_table.biom:5: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/DPCoA.Rd:29: Euclidian ==> Euclidean
data/r-bioc-phyloseq-1.34.0+dfsg/man/UniFrac-methods.Rd:81: acheived ==> achieved
data/r-bioc-phyloseq-1.34.0+dfsg/man/assign-otu_table.Rd:10: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/assign-otu_table.Rd:29: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/assign-otu_table.Rd:37: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/assign-otu_table.Rd:38: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/assign-sample_data.Rd:37: occurr ==> occur
data/r-bioc-phyloseq-1.34.0+dfsg/man/assign-sample_names.Rd:12: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/assign-sample_names.Rd:34: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/assign-taxa_names.Rd:14: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/assign-taxa_names.Rd:40: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/build_tax_table.Rd:13: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/build_tax_table.Rd:14: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/build_tax_table.Rd:18: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/cca-rda-phyloseq-methods.Rd:30: contraining ==> constraining
data/r-bioc-phyloseq-1.34.0+dfsg/man/data-esophagus.Rd:20: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/data-soilrep.Rd:42: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/envHash2otu_table.Rd:5: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/envHash2otu_table.Rd:15: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/envHash2otu_table.Rd:16: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/envHash2otu_table.Rd:21: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/export_mothur_dist.Rd:30: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/filter_taxa.Rd:5: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/filter_taxa.Rd:33: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/filter_taxa.Rd:36: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/gapstat_ord.Rd:62: sord ==> sword, sore, sored, sawed, soared
data/r-bioc-phyloseq-1.34.0+dfsg/man/gapstat_ord.Rd:64: sord ==> sword, sore, sored, sawed, soared
data/r-bioc-phyloseq-1.34.0+dfsg/man/gapstat_ord.Rd:66: sord ==> sword, sore, sored, sawed, soared
data/r-bioc-phyloseq-1.34.0+dfsg/man/gapstat_ord.Rd:67: sord ==> sword, sore, sored, sawed, soared
data/r-bioc-phyloseq-1.34.0+dfsg/man/genefilter_sample-methods.Rd:32: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/genefilter_sample-methods.Rd:42: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/genefilter_sample-methods.Rd:69: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/get_sample-methods.Rd:19: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/import.Rd:17: paramaters ==> parameters
data/r-bioc-phyloseq-1.34.0+dfsg/man/import_RDP_cluster.Rd:27: aligment ==> alignment
data/r-bioc-phyloseq-1.34.0+dfsg/man/import_RDP_cluster.Rd:41: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/import_RDP_otu.Rd:11: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/import_RDP_otu.Rd:23: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/import_RDP_otu.Rd:23: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/import_RDP_otu.Rd:23: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/import_RDP_otu.Rd:24: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/import_RDP_otu.Rd:25: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/import_biom.Rd:16: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/import_biom.Rd:16: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/import_biom.Rd:39: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/import_biom.Rd:41: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/import_biom.Rd:42: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/import_biom.Rd:49: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/import_biom.Rd:52: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/import_biom.Rd:55: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/import_biom.Rd:64: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/import_biom.Rd:69: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/import_biom.Rd:84: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/import_env_file.Rd:10: charater ==> character
data/r-bioc-phyloseq-1.34.0+dfsg/man/import_mothur.Rd:27: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/import_mothur.Rd:87: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/import_mothur.Rd:89: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/import_mothur_dist.Rd:18: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/import_mothur_groups.Rd:21: useable ==> usable
data/r-bioc-phyloseq-1.34.0+dfsg/man/import_mothur_groups.Rd:25: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/import_mothur_otu_table.Rd:19: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/import_mothur_otulist.Rd:13: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/import_mothur_otulist.Rd:31: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/import_mothur_otulist.Rd:32: useable ==> usable
data/r-bioc-phyloseq-1.34.0+dfsg/man/import_mothur_otulist.Rd:36: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/import_qiime.Rd:5: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/import_qiime.Rd:14: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/import_qiime.Rd:15: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/import_qiime.Rd:38: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/import_qiime.Rd:40: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/import_qiime.Rd:41: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/import_qiime.Rd:48: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/import_qiime.Rd:51: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/import_qiime.Rd:54: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/import_qiime.Rd:63: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/import_qiime.Rd:68: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/import_qiime.Rd:82: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/import_qiime.Rd:90: progresss ==> progress
data/r-bioc-phyloseq-1.34.0+dfsg/man/import_qiime.Rd:117: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/import_qiime.Rd:126: ot ==> to, of, or
data/r-bioc-phyloseq-1.34.0+dfsg/man/import_qiime_otu_tax.Rd:5: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/import_qiime_otu_tax.Rd:16: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/import_qiime_otu_tax.Rd:24: progresss ==> progress
data/r-bioc-phyloseq-1.34.0+dfsg/man/import_qiime_otu_tax.Rd:36: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/import_qiime_otu_tax.Rd:42: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/import_uparse.Rd:29: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/import_uparse.Rd:42: progresss ==> progress
data/r-bioc-phyloseq-1.34.0+dfsg/man/import_uparse.Rd:47: algortihm ==> algorithm
data/r-bioc-phyloseq-1.34.0+dfsg/man/import_usearch_uc.Rd:5: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/import_usearch_uc.Rd:23: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/import_usearch_uc.Rd:34: progresss ==> progress
data/r-bioc-phyloseq-1.34.0+dfsg/man/import_usearch_uc.Rd:39: algortihm ==> algorithm
data/r-bioc-phyloseq-1.34.0+dfsg/man/import_usearch_uc.Rd:65: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/merge_phyloseq.Rd:15: desribed ==> described
data/r-bioc-phyloseq-1.34.0+dfsg/man/merge_phyloseq.Rd:27: ommitted ==> omitted
data/r-bioc-phyloseq-1.34.0+dfsg/man/merge_phyloseq.Rd:46: desribed ==> described
data/r-bioc-phyloseq-1.34.0+dfsg/man/merge_samples-methods.Rd:59: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/merge_taxa-methods.Rd:12: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/merge_taxa-methods.Rd:40: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/merge_taxa-methods.Rd:43: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/merge_taxa-methods.Rd:45: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/merge_taxa-methods.Rd:68: otu ==> out
data/r-bioc-phyloseq-1.34.0+dfsg/man/merge_taxa-methods.Rd:69: otu ==> out
data/r-bioc-phyloseq-1.34.0+dfsg/man/microbio_me_qiime.Rd:31: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/mt-methods.Rd:41: coercable ==> coercible
data/r-bioc-phyloseq-1.34.0+dfsg/man/ordinate.Rd:85: arguemnts ==> arguments
data/r-bioc-phyloseq-1.34.0+dfsg/man/otu_table-methods.Rd:41: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/parseTaxonomy-functions.Rd:17: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/parseTaxonomy-functions.Rd:21: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/parseTaxonomy-functions.Rd:38: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/parseTaxonomy-functions.Rd:53: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/phyloseq-deprecated.Rd:38: tre ==> tree
data/r-bioc-phyloseq-1.34.0+dfsg/man/phyloseq-deprecated.Rd:42: tre ==> tree
data/r-bioc-phyloseq-1.34.0+dfsg/man/phyloseq-deprecated.Rd:101: tre ==> tree
data/r-bioc-phyloseq-1.34.0+dfsg/man/phyloseq-deprecated.Rd:105: tre ==> tree
data/r-bioc-phyloseq-1.34.0+dfsg/man/phyloseq-package.Rd:12: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/plot_bar.Rd:23: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/plot_clusgap.Rd:35: sord ==> sword, sore, sored, sawed, soared
data/r-bioc-phyloseq-1.34.0+dfsg/man/plot_clusgap.Rd:37: sord ==> sword, sore, sored, sawed, soared
data/r-bioc-phyloseq-1.34.0+dfsg/man/plot_clusgap.Rd:39: sord ==> sword, sore, sored, sawed, soared
data/r-bioc-phyloseq-1.34.0+dfsg/man/plot_clusgap.Rd:40: sord ==> sword, sore, sored, sawed, soared
data/r-bioc-phyloseq-1.34.0+dfsg/man/plot_heatmap.Rd:38: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/plot_heatmap.Rd:73: supercedes ==> supersedes
data/r-bioc-phyloseq-1.34.0+dfsg/man/plot_heatmap.Rd:114: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/plot_heatmap.Rd:140: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/plot_heatmap.Rd:182: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/plot_scree.Rd:32: preforms ==> performs
data/r-bioc-phyloseq-1.34.0+dfsg/man/psmelt.Rd:25: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/psmelt.Rd:33: automtically ==> automatically
data/r-bioc-phyloseq-1.34.0+dfsg/man/psmelt.Rd:44: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/psmelt.Rd:45: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/rarefy_even_depth.Rd:5: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/rarefy_even_depth.Rd:34: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/read_tree_greengenes.Rd:16: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/subset_taxa-methods.Rd:29: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/taxa_sums.Rd:5: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/tip_glom.Rd:38: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/tip_glom.Rd:45: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/man/tip_glom.Rd:49: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/tests/testthat/test-IO.R:75: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/tests/testthat/test-IO.R:320: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/tests/testthat/test-IO.R:322: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/tests/testthat/test-distance.R:68: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/tests/testthat/test-distance.R:78: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/tests/testthat/test-distance.R:88: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/tests/testthat/test-distance.R:102: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/tests/testthat/test-distance.R:112: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/tests/testthat/test-merge.R:46: occured ==> occurred
data/r-bioc-phyloseq-1.34.0+dfsg/tests/testthat/test-merge.R:199: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/tests/testthat/test-merge.R:206: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/tests/testthat/test-merge.R:209: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/tests/testthat/test-merge.R:214: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/tests/testthat/test-merge.R:225: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/tests/testthat/test-merge.R:236: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/tests/testthat/test-phyloseq.R:12: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/tests/testthat/test-phyloseq.R:29: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/tests/testthat/test-phyloseq.R:112: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/tests/testthat/test-phyloseq.R:114: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/tests/testthat/test-phyloseq.R:116: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/tests/testthat/test-phyloseq.R:119: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/tests/testthat/test-phyloseq.R:121: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/tests/testthat/test-phyloseq.R:126: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/tests/testthat/test-plot.R:14: otu ==> out
data/r-bioc-phyloseq-1.34.0+dfsg/tests/testthat/test-plot.R:17: otu ==> out
data/r-bioc-phyloseq-1.34.0+dfsg/tests/testthat/test-plot.R:37: otu ==> out
data/r-bioc-phyloseq-1.34.0+dfsg/tests/testthat/test-plot.R:39: otu ==> out
data/r-bioc-phyloseq-1.34.0+dfsg/tests/testthat/test-plot.R:41: otu ==> out
data/r-bioc-phyloseq-1.34.0+dfsg/tests/testthat/test-plot.R:43: otu ==> out
data/r-bioc-phyloseq-1.34.0+dfsg/tests/testthat/test-plot.R:48: otu ==> out
data/r-bioc-phyloseq-1.34.0+dfsg/tests/testthat/test-plot.R:64: otu ==> out
data/r-bioc-phyloseq-1.34.0+dfsg/tests/testthat/test-plot.R:91: otu ==> out
data/r-bioc-phyloseq-1.34.0+dfsg/tests/testthat/test-plot.R:406: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/tests/testthat/test-plot.R:409: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/tests/testthat/test-plot.R:412: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/tests/testthat/test-plot.R:414: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/tests/testthat/test-plot.R:422: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/tests/testthat/test-plot.R:430: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/tests/testthat/test-plot.R:438: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/tests/testthat/test-plot.R:445: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/tests/testthat/test-plot.R:450: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/tests/testthat/test-plot.R:457: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/tests/testthat/test-plot.R:472: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/tests/testthat/test-plot.R:474: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/tests/testthat/test-plot.R:476: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/tests/testthat/test-plot.R:491: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/tests/testthat/test-plot.R:496: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/tests/testthat/test-subset.R:50: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/tests/testthat/test-transform.R:9: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/tests/testthat/test-transform.R:34: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/tests/testthat/test-transform.R:47: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/tests/testthat/test-transform.R:56: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/tests/testthat/test-transform.R:88: ans ==> and
data/r-bioc-phyloseq-1.34.0+dfsg/tests/testthat/test-transform.R:89: ans ==> and
data/r-bioc-phyloseq-1.34.0+dfsg/tests/testthat/test-transform.R:89: ans ==> and
data/r-bioc-phyloseq-1.34.0+dfsg/tests/testthat/test-transform.R:91: ans ==> and
data/r-bioc-phyloseq-1.34.0+dfsg/tests/testthat/test-transform.R:95: ans ==> and
data/r-bioc-phyloseq-1.34.0+dfsg/tests/testthat/test-transform.R:96: ans ==> and
data/r-bioc-phyloseq-1.34.0+dfsg/tests/testthat/test-transform.R:96: ans ==> and
data/r-bioc-phyloseq-1.34.0+dfsg/tests/testthat/test-transform.R:98: ans ==> and
data/r-bioc-phyloseq-1.34.0+dfsg/vignettes/phyloseq-FAQ.Rmd:114: ouput ==> output
data/r-bioc-phyloseq-1.34.0+dfsg/vignettes/phyloseq-FAQ.Rmd:264: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/vignettes/phyloseq-analysis.Rmd:115: overlayed ==> overlaid
data/r-bioc-phyloseq-1.34.0+dfsg/vignettes/phyloseq-analysis.Rmd:147: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/vignettes/phyloseq-analysis.Rmd:156: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/vignettes/phyloseq-analysis.Rmd:156: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/vignettes/phyloseq-analysis.Rmd:178: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/vignettes/phyloseq-analysis.Rmd:178: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/vignettes/phyloseq-analysis.Rmd:184: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/vignettes/phyloseq-analysis.Rmd:184: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/vignettes/phyloseq-analysis.Rmd:229: orginally ==> originally
data/r-bioc-phyloseq-1.34.0+dfsg/vignettes/phyloseq-analysis.Rmd:461: Currrently ==> Currently
data/r-bioc-phyloseq-1.34.0+dfsg/vignettes/phyloseq-analysis.Rmd:461: retreiving ==> retrieving
data/r-bioc-phyloseq-1.34.0+dfsg/vignettes/phyloseq-basics.Rmd:70: build-in ==> built-in
data/r-bioc-phyloseq-1.34.0+dfsg/vignettes/phyloseq-basics.Rmd:70: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/vignettes/phyloseq-basics.Rmd:70: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/vignettes/phyloseq-basics.Rmd:78: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/vignettes/phyloseq-basics.Rmd:86: additonal ==> additional
data/r-bioc-phyloseq-1.34.0+dfsg/vignettes/phyloseq-basics.Rmd:151: suppored ==> supported
data/r-bioc-phyloseq-1.34.0+dfsg/vignettes/phyloseq-basics.Rmd:173: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/vignettes/phyloseq-basics.Rmd:185: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/vignettes/phyloseq-basics.Rmd:204: tre ==> tree
data/r-bioc-phyloseq-1.34.0+dfsg/vignettes/phyloseq-basics.Rmd:211: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/vignettes/phyloseq-basics.Rmd:241: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/vignettes/phyloseq-basics.Rmd:248: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/vignettes/phyloseq-basics.Rmd:256: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/vignettes/phyloseq-basics.Rmd:256: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/vignettes/phyloseq-basics.Rmd:261: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/vignettes/phyloseq-basics.Rmd:279: aligment ==> alignment
data/r-bioc-phyloseq-1.34.0+dfsg/vignettes/phyloseq-basics.Rmd:322: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/vignettes/phyloseq-basics.Rmd:323: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/vignettes/phyloseq-basics.Rmd:456: relavent ==> relevant
data/r-bioc-phyloseq-1.34.0+dfsg/vignettes/phyloseq-basics.Rmd:482: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/vignettes/phyloseq-basics.Rmd:482: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/vignettes/phyloseq-basics.Rmd:540: analyis ==> analysis
data/r-bioc-phyloseq-1.34.0+dfsg/vignettes/phyloseq-basics.Rmd:561: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/vignettes/phyloseq-mixture-models.Rmd:65: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/vignettes/phyloseq-mixture-models.Rmd:159: OTU ==> OUT
data/r-bioc-phyloseq-1.34.0+dfsg/vignettes/phyloseq-mixture-models.Rmd:167: OTU ==> OUT