data/r-bioc-rsamtools-2.6.0/NEWS:82: desinations ==> destinations
data/r-bioc-rsamtools-2.6.0/NEWS:90: controled ==> controlled
data/r-bioc-rsamtools-2.6.0/migration_notes.md:79: Gord ==> Gourd
data/r-bioc-rsamtools-2.6.0/R/methods-BamFile.R:359: ans ==> and
data/r-bioc-rsamtools-2.6.0/R/methods-BamFile.R:361: ans ==> and
data/r-bioc-rsamtools-2.6.0/R/methods-BamFile.R:361: ans ==> and
data/r-bioc-rsamtools-2.6.0/R/methods-BamFile.R:363: ans ==> and
data/r-bioc-rsamtools-2.6.0/R/methods-FaFile.R:5: ans ==> and
data/r-bioc-rsamtools-2.6.0/R/methods-FaFile.R:6: ans ==> and
data/r-bioc-rsamtools-2.6.0/R/methods-FaFile.R:7: ans ==> and
data/r-bioc-rsamtools-2.6.0/R/methods-ScanBamParam.R:365: ans ==> and
data/r-bioc-rsamtools-2.6.0/R/methods-ScanBamParam.R:366: ans ==> and
data/r-bioc-rsamtools-2.6.0/R/methods-ScanBamParam.R:367: ans ==> and
data/r-bioc-rsamtools-2.6.0/R/methods-ScanBamParam.R:385: ans ==> and
data/r-bioc-rsamtools-2.6.0/R/methods-ScanBamParam.R:386: ans ==> and
data/r-bioc-rsamtools-2.6.0/R/methods-ScanBamParam.R:387: ans ==> and
data/r-bioc-rsamtools-2.6.0/R/pileup.R:207: ans ==> and
data/r-bioc-rsamtools-2.6.0/R/pileup.R:213: ans ==> and
data/r-bioc-rsamtools-2.6.0/R/pileup.R:213: ans ==> and
data/r-bioc-rsamtools-2.6.0/inst/doc/Rsamtools-Overview.R:124: hsa ==> has
data/r-bioc-rsamtools-2.6.0/inst/doc/Rsamtools-Overview.Rnw:267: hsa ==> has
data/r-bioc-rsamtools-2.6.0/inst/extdata/pileup.txt:50: BA ==> BY, BE
data/r-bioc-rsamtools-2.6.0/inst/extdata/pileup.txt:112: BA ==> BY, BE
data/r-bioc-rsamtools-2.6.0/inst/extdata/pileup.txt:116: BA ==> BY, BE
data/r-bioc-rsamtools-2.6.0/inst/extdata/pileup.txt:116: BA ==> BY, BE
data/r-bioc-rsamtools-2.6.0/inst/extdata/pileup.txt:256: BA ==> BY, BE
data/r-bioc-rsamtools-2.6.0/inst/extdata/pileup.txt:312: BA ==> BY, BE
data/r-bioc-rsamtools-2.6.0/inst/extdata/pileup.txt:347: BA ==> BY, BE
data/r-bioc-rsamtools-2.6.0/inst/extdata/pileup.txt:358: ot ==> to, of, or
data/r-bioc-rsamtools-2.6.0/inst/extdata/pileup.txt:367: BA ==> BY, BE
data/r-bioc-rsamtools-2.6.0/inst/extdata/pileup.txt:393: BA ==> BY, BE
data/r-bioc-rsamtools-2.6.0/inst/extdata/pileup.txt:395: BA ==> BY, BE
data/r-bioc-rsamtools-2.6.0/inst/extdata/pileup.txt:404: BA ==> BY, BE
data/r-bioc-rsamtools-2.6.0/inst/extdata/pileup.txt:423: BA ==> BY, BE
data/r-bioc-rsamtools-2.6.0/inst/extdata/pileup.txt:457: BA ==> BY, BE
data/r-bioc-rsamtools-2.6.0/inst/extdata/pileup.txt:537: OT ==> TO, OF, OR
data/r-bioc-rsamtools-2.6.0/inst/extdata/pileup.txt:574: BA ==> BY, BE
data/r-bioc-rsamtools-2.6.0/inst/extdata/pileup.txt:579: BA ==> BY, BE
data/r-bioc-rsamtools-2.6.0/inst/extdata/pileup.txt:638: BA ==> BY, BE
data/r-bioc-rsamtools-2.6.0/inst/extdata/pileup.txt:668: BA ==> BY, BE
data/r-bioc-rsamtools-2.6.0/inst/extdata/pileup.txt:674: BA ==> BY, BE
data/r-bioc-rsamtools-2.6.0/inst/extdata/pileup.txt:675: BA ==> BY, BE
data/r-bioc-rsamtools-2.6.0/inst/extdata/pileup.txt:717: BA ==> BY, BE
data/r-bioc-rsamtools-2.6.0/inst/extdata/pileup.txt:766: BA ==> BY, BE
data/r-bioc-rsamtools-2.6.0/inst/extdata/pileup.txt:780: BA ==> BY, BE
data/r-bioc-rsamtools-2.6.0/inst/extdata/pileup.txt:855: BA ==> BY, BE
data/r-bioc-rsamtools-2.6.0/inst/extdata/pileup.txt:972: BA ==> BY, BE
data/r-bioc-rsamtools-2.6.0/inst/scripts/BamViews-1000g.R:46: hsa ==> has
data/r-bioc-rsamtools-2.6.0/man/ApplyPileupsParam-class.Rd:114: instace ==> instance
data/r-bioc-rsamtools-2.6.0/man/FaFile-class.Rd:109: arguemnts ==> arguments
data/r-bioc-rsamtools-2.6.0/man/PileupFiles-class.Rd:23: indicies ==> indices
data/r-bioc-rsamtools-2.6.0/man/PileupFiles-class.Rd:57: indicies ==> indices
data/r-bioc-rsamtools-2.6.0/man/TabixFile-class.Rd:151: indicies ==> indices
data/r-bioc-rsamtools-2.6.0/man/TabixFile-class.Rd:153: preceeded ==> preceded, proceeded
data/r-bioc-rsamtools-2.6.0/man/applyPileups.Rd:123: inforamtion ==> information
data/r-bioc-rsamtools-2.6.0/man/headerTabix.Rd:37: indicies ==> indices
data/r-bioc-rsamtools-2.6.0/man/indexTabix.Rd:53: coordinats ==> coordinates
data/r-bioc-rsamtools-2.6.0/man/pileup.Rd:519: ambiguious ==> ambiguous
data/r-bioc-rsamtools-2.6.0/man/pileup.Rd:605: segements ==> segments
data/r-bioc-rsamtools-2.6.0/man/scanFa.Rd:22: indicies ==> indices
data/r-bioc-rsamtools-2.6.0/man/scanTabix.Rd:56: occured ==> occurred
data/r-bioc-rsamtools-2.6.0/src/bamfile.c:147: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/bamfile.c:150: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/bamfile.c:152: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/bamfile.c:157: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/bamfile.c:167: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/bamfile.c:171: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/bcffile.c:185: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/bcffile.c:189: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/bcffile.c:191: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/bcffile.c:198: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/bcffile.c:204: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/bcffile.c:207: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/bcffile.c:222: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/bcffile.c:230: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/bcffile.c:231: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/bcffile.c:243: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/bcffile.c:244: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/bcffile.c:252: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/bcffile.c:253: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/bcffile.c:265: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/bcffile.c:271: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/bcffile.c:274: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/bcffile.c:278: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/bcffile.c:282: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/bcffile.c:306: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/bcffile.c:503: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/bcffile.c:508: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/bcffile.c:524: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/bcffile.c:528: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/bcffile.c:536: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/bcffile.c:543: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/bcffile.c:548: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/bcffile.c:552: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/bcffile.c:621: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/bcffile.c:626: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/bcffile.c:629: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/bcffile.c:632: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/bcffile.c:636: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/bcffile.c:640: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/bcffile.c:643: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/bcffile.c:646: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/bcffile.c:650: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/bcffile.c:654: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/bcffile.c:657: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/bcffile.c:661: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/bcffile.c:666: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/bcffile.c:670: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/bcffile.c:676: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/bcffile.c:686: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/bcffile.c:701: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/bcffile.c:705: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/bcffile.c:713: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/bcffile.c:736: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/bcffile.c:739: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/bcffile.c:740: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/bcffile.c:741: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/bcffile.c:749: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/bcffile.c:752: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/bcffile.c:759: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/bcffile.c:762: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/fafile.c:75: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/fafile.c:79: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/fafile.c:81: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/fafile.c:157: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/fafile.c:158: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/fafile.c:179: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/io_sam.c:72: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/io_sam.c:75: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/io_sam.c:140: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/io_sam.c:142: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/io_sam.c:148: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/io_sam.c:149: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/io_sam.c:163: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/io_sam.c:164: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/io_sam.c:201: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/tabixfile.c:136: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/tabixfile.c:140: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/tabixfile.c:142: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/utilities.c:49: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/utilities.c:55: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/utilities.c:57: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/utilities.c:156: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/utilities.c:161: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/utilities.c:165: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/utilities.c:175: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/utilities.c:426: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/utilities.c:443: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/utilities.c:469: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/utilities.c:475: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/utilities.c:490: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/utilities.c:498: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/utilities.c:499: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/utilities.c:532: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/utilities.c:533: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/utilities.c:534: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/utilities.c:535: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/utilities.c:539: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/utilities.c:541: ans ==> and
data/r-bioc-rsamtools-2.6.0/src/utilities.c:545: ans ==> and
data/r-bioc-rsamtools-2.6.0/vignettes/Rsamtools-Overview.Rnw:267: hsa ==> has
data/r-bioc-rsamtools-2.6.0/debian/copyright:107: MERCHANTIBILITY ==> MERCHANTABILITY