data/r-cran-bio3d-2.4-1/NAMESPACE:28: cna ==> can
data/r-cran-bio3d-2.4-1/NAMESPACE:29: cna ==> can
data/r-cran-bio3d-2.4-1/NAMESPACE:57: cna ==> can
data/r-cran-bio3d-2.4-1/NAMESPACE:74: cna ==> can
data/r-cran-bio3d-2.4-1/NAMESPACE:100: cna ==> can
data/r-cran-bio3d-2.4-1/NAMESPACE:113: cna ==> can
data/r-cran-bio3d-2.4-1/NAMESPACE:125: cna ==> can
data/r-cran-bio3d-2.4-1/NEWS:80: cna ==> can
data/r-cran-bio3d-2.4-1/NEWS:80: cna ==> can
data/r-cran-bio3d-2.4-1/NEWS:117: cna ==> can
data/r-cran-bio3d-2.4-1/NEWS:141: cna ==> can
data/r-cran-bio3d-2.4-1/NEWS:152: cna ==> can
data/r-cran-bio3d-2.4-1/NEWS:153: cna ==> can
data/r-cran-bio3d-2.4-1/NEWS:154: cna ==> can
data/r-cran-bio3d-2.4-1/NEWS:154: cna ==> can
data/r-cran-bio3d-2.4-1/NEWS:155: cna ==> can
data/r-cran-bio3d-2.4-1/NEWS:155: CNA ==> CAN
data/r-cran-bio3d-2.4-1/NEWS:156: cna ==> can
data/r-cran-bio3d-2.4-1/NEWS:157: cna ==> can
data/r-cran-bio3d-2.4-1/NEWS:157: CNA ==> CAN
data/r-cran-bio3d-2.4-1/NEWS:158: cna ==> can
data/r-cran-bio3d-2.4-1/NEWS:158: cna ==> can
data/r-cran-bio3d-2.4-1/NEWS:159: CNA ==> CAN
data/r-cran-bio3d-2.4-1/NEWS:160: CNA ==> CAN
data/r-cran-bio3d-2.4-1/NEWS:177: Formated ==> Formatted
data/r-cran-bio3d-2.4-1/NEWS:260: Whats ==> What's
data/r-cran-bio3d-2.4-1/MD5:44: cna ==> can
data/r-cran-bio3d-2.4-1/MD5:45: cna ==> can
data/r-cran-bio3d-2.4-1/MD5:46: cna ==> can
data/r-cran-bio3d-2.4-1/MD5:95: cna ==> can
data/r-cran-bio3d-2.4-1/MD5:103: cna ==> can
data/r-cran-bio3d-2.4-1/MD5:142: cna ==> can
data/r-cran-bio3d-2.4-1/MD5:159: cna ==> can
data/r-cran-bio3d-2.4-1/MD5:172: cna ==> can
data/r-cran-bio3d-2.4-1/MD5:209: cna ==> can
data/r-cran-bio3d-2.4-1/MD5:223: cna ==> can
data/r-cran-bio3d-2.4-1/MD5:303: cna ==> can
data/r-cran-bio3d-2.4-1/MD5:345: cna ==> can
data/r-cran-bio3d-2.4-1/MD5:353: cna ==> can
data/r-cran-bio3d-2.4-1/MD5:386: cna ==> can
data/r-cran-bio3d-2.4-1/MD5:400: cna ==> can
data/r-cran-bio3d-2.4-1/MD5:405: cna ==> can
data/r-cran-bio3d-2.4-1/MD5:447: cna ==> can
data/r-cran-bio3d-2.4-1/demo/pdb.R:26: Whats ==> What's
data/r-cran-bio3d-2.4-1/demo/md.R:31: Whats ==> What's
data/r-cran-bio3d-2.4-1/man/atom2ele.Rd:30: searchs ==> searches
data/r-cran-bio3d-2.4-1/man/plot.cmap.Rd:90: Calcualte ==> Calculate
data/r-cran-bio3d-2.4-1/man/aa.index.Rd:12: indeces ==> indices
data/r-cran-bio3d-2.4-1/man/aa.index.Rd:21: indeces ==> indices
data/r-cran-bio3d-2.4-1/man/aa.index.Rd:45: indeces ==> indices
data/r-cran-bio3d-2.4-1/man/aa.index.Rd:49: indeces ==> indices
data/r-cran-bio3d-2.4-1/man/aa.index.Rd:55: indeces ==> indices
data/r-cran-bio3d-2.4-1/man/overlap.Rd:18: similiarity ==> similarity
data/r-cran-bio3d-2.4-1/man/read.dcd.Rd:3: NAMD ==> NAMED, NAME
data/r-cran-bio3d-2.4-1/man/read.dcd.Rd:21: NAMD ==> NAMED, NAME
data/r-cran-bio3d-2.4-1/man/write.pdb.Rd:43: primarly ==> primarily
data/r-cran-bio3d-2.4-1/man/pdb.annotate.Rd:13: charater ==> character
data/r-cran-bio3d-2.4-1/man/nma.pdb.Rd:49: containg ==> containing
data/r-cran-bio3d-2.4-1/man/nma.pdb.Rd:107: efficent ==> efficient
data/r-cran-bio3d-2.4-1/man/nma.pdb.Rd:134: stucture ==> structure
data/r-cran-bio3d-2.4-1/man/aanma.pdbs.Rd:29: specifing ==> specifying
data/r-cran-bio3d-2.4-1/man/aanma.pdbs.Rd:72: ommited ==> omitted
data/r-cran-bio3d-2.4-1/man/aanma.pdbs.Rd:92: Alignement ==> Alignment
data/r-cran-bio3d-2.4-1/man/seqaln.pair.Rd:30: identifers ==> identifiers
data/r-cran-bio3d-2.4-1/man/example.data.Rd:46: cna ==> can
data/r-cran-bio3d-2.4-1/man/read.all.Rd:17: extention ==> extension
data/r-cran-bio3d-2.4-1/man/read.all.Rd:31: identifers ==> identifiers
data/r-cran-bio3d-2.4-1/man/read.all.Rd:33: identifer ==> identifier
data/r-cran-bio3d-2.4-1/man/read.all.Rd:66: offical ==> official
data/r-cran-bio3d-2.4-1/man/store.atom.Rd:26: offical ==> official
data/r-cran-bio3d-2.4-1/man/gap.inspect.Rd:17: coloums ==> columns
data/r-cran-bio3d-2.4-1/man/gap.inspect.Rd:26: coloums ==> columns
data/r-cran-bio3d-2.4-1/man/gap.inspect.Rd:27: coloums ==> columns
data/r-cran-bio3d-2.4-1/man/dccm.xyz.Rd:55: diagnol ==> diagonal
data/r-cran-bio3d-2.4-1/man/dccm.xyz.Rd:60: diagnol ==> diagonal
data/r-cran-bio3d-2.4-1/man/dccm.xyz.Rd:61: orthognal ==> orthogonal
data/r-cran-bio3d-2.4-1/man/filter.dccm.Rd:52: cna ==> can
data/r-cran-bio3d-2.4-1/man/nma.Rd:55: Singe ==> Single
data/r-cran-bio3d-2.4-1/man/nma.Rd:56: stucture ==> structure
data/r-cran-bio3d-2.4-1/man/nma.Rd:81: Alignement ==> Alignment
data/r-cran-bio3d-2.4-1/man/mustang.Rd:18: SER ==> SET
data/r-cran-bio3d-2.4-1/man/mustang.Rd:37: SER ==> SET
data/r-cran-bio3d-2.4-1/man/mustang.Rd:45: identifers ==> identifiers
data/r-cran-bio3d-2.4-1/man/wrap.tor.Rd:22: wraping ==> wrapping, warping
data/r-cran-bio3d-2.4-1/man/plot.dccm.Rd:96: cna ==> can
data/r-cran-bio3d-2.4-1/man/pdbfit.Rd:28: specifing ==> specifying
data/r-cran-bio3d-2.4-1/man/pdbfit.Rd:68: outputing ==> outputting
data/r-cran-bio3d-2.4-1/man/bounds.sse.Rd:20: funciton ==> function
data/r-cran-bio3d-2.4-1/man/read.fasta.pdb.Rd:16: extention ==> extension
data/r-cran-bio3d-2.4-1/man/read.fasta.pdb.Rd:32: identifers ==> identifiers
data/r-cran-bio3d-2.4-1/man/read.fasta.pdb.Rd:34: identifer ==> identifier
data/r-cran-bio3d-2.4-1/man/aanma.pdb.Rd:137: stucture ==> structure
data/r-cran-bio3d-2.4-1/man/community.aln.Rd:10: cna ==> can
data/r-cran-bio3d-2.4-1/man/community.aln.Rd:12: cna ==> can
data/r-cran-bio3d-2.4-1/man/community.aln.Rd:13: cna ==> can
data/r-cran-bio3d-2.4-1/man/community.aln.Rd:18: cna ==> can
data/r-cran-bio3d-2.4-1/man/community.aln.Rd:29: cna ==> can
data/r-cran-bio3d-2.4-1/man/community.aln.Rd:30: cna ==> can
data/r-cran-bio3d-2.4-1/man/community.aln.Rd:33: funciton ==> function
data/r-cran-bio3d-2.4-1/man/community.aln.Rd:52: Alignement ==> Alignment
data/r-cran-bio3d-2.4-1/man/community.aln.Rd:62: cna ==> can
data/r-cran-bio3d-2.4-1/man/community.aln.Rd:74: cna ==> can
data/r-cran-bio3d-2.4-1/man/community.aln.Rd:77: cna ==> can
data/r-cran-bio3d-2.4-1/man/community.aln.Rd:82: cna ==> can
data/r-cran-bio3d-2.4-1/man/community.aln.Rd:85: cna ==> can
data/r-cran-bio3d-2.4-1/man/community.aln.Rd:94: cna ==> can
data/r-cran-bio3d-2.4-1/man/community.aln.Rd:94: cna ==> can
data/r-cran-bio3d-2.4-1/man/community.aln.Rd:94: cna ==> can
data/r-cran-bio3d-2.4-1/man/fluct.nma.Rd:32: stucture ==> structure
data/r-cran-bio3d-2.4-1/man/cnapath.Rd:11: cna ==> can
data/r-cran-bio3d-2.4-1/man/cnapath.Rd:17: cna ==> can
data/r-cran-bio3d-2.4-1/man/cnapath.Rd:17: cna ==> can
data/r-cran-bio3d-2.4-1/man/cnapath.Rd:17: cna ==> can
data/r-cran-bio3d-2.4-1/man/cnapath.Rd:46: cna ==> can
data/r-cran-bio3d-2.4-1/man/cnapath.Rd:71: cna ==> can
data/r-cran-bio3d-2.4-1/man/cnapath.Rd:71: cna ==> can
data/r-cran-bio3d-2.4-1/man/cnapath.Rd:72: cna ==> can
data/r-cran-bio3d-2.4-1/man/cnapath.Rd:90: cna ==> can
data/r-cran-bio3d-2.4-1/man/pymol.Rd:63: coefficents ==> coefficients
data/r-cran-bio3d-2.4-1/man/pymol.Rd:64: coefficents ==> coefficients
data/r-cran-bio3d-2.4-1/man/pymol.Rd:67: dimesions ==> dimensions
data/r-cran-bio3d-2.4-1/man/pymol.Rd:82: CONECT ==> CONNECT
data/r-cran-bio3d-2.4-1/man/pymol.Rd:133: stucture ==> structure
data/r-cran-bio3d-2.4-1/man/print.core.Rd:43: invarient ==> invariant
data/r-cran-bio3d-2.4-1/man/pdbs2sse.Rd:31: attemt ==> attempt
data/r-cran-bio3d-2.4-1/man/nma.pdbs.Rd:32: specifing ==> specifying
data/r-cran-bio3d-2.4-1/man/nma.pdbs.Rd:52: ommited ==> omitted
data/r-cran-bio3d-2.4-1/man/nma.pdbs.Rd:106: Alignement ==> Alignment
data/r-cran-bio3d-2.4-1/man/aa.table.Rd:7: occuring ==> occurring
data/r-cran-bio3d-2.4-1/man/write.pir.Rd:3: Formated ==> Formatted
data/r-cran-bio3d-2.4-1/man/write.pir.Rd:15: identifers ==> identifiers
data/r-cran-bio3d-2.4-1/man/dm.Rd:97: Downlaod ==> Download
data/r-cran-bio3d-2.4-1/man/aa123.Rd:41: SER ==> SET
data/r-cran-bio3d-2.4-1/man/deformation.nma.Rd:49: stucture ==> structure
data/r-cran-bio3d-2.4-1/man/difference.vector.Rd:19: similiarity ==> similarity
data/r-cran-bio3d-2.4-1/man/layout.cna.Rd:1: cna ==> can
data/r-cran-bio3d-2.4-1/man/layout.cna.Rd:2: cna ==> can
data/r-cran-bio3d-2.4-1/man/layout.cna.Rd:9: cna ==> can
data/r-cran-bio3d-2.4-1/man/layout.cna.Rd:12: cna ==> can
data/r-cran-bio3d-2.4-1/man/layout.cna.Rd:39: cna ==> can
data/r-cran-bio3d-2.4-1/man/layout.cna.Rd:56: cna ==> can
data/r-cran-bio3d-2.4-1/man/layout.cna.Rd:57: cna ==> can
data/r-cran-bio3d-2.4-1/man/layout.cna.Rd:59: cna ==> can
data/r-cran-bio3d-2.4-1/man/layout.cna.Rd:60: cna ==> can
data/r-cran-bio3d-2.4-1/man/layout.cna.Rd:62: cna ==> can
data/r-cran-bio3d-2.4-1/man/layout.cna.Rd:62: cna ==> can
data/r-cran-bio3d-2.4-1/man/layout.cna.Rd:63: cna ==> can
data/r-cran-bio3d-2.4-1/man/layout.cna.Rd:63: cna ==> can
data/r-cran-bio3d-2.4-1/man/layout.cna.Rd:64: cna ==> can
data/r-cran-bio3d-2.4-1/man/layout.cna.Rd:64: cna ==> can
data/r-cran-bio3d-2.4-1/man/pdb2sse.Rd:18: seperated ==> separated
data/r-cran-bio3d-2.4-1/man/atom.select.Rd:66: retured ==> returned
data/r-cran-bio3d-2.4-1/man/gnm.Rd:89: stucture ==> structure
data/r-cran-bio3d-2.4-1/man/bio3d.package.Rd:35: cna ==> can
data/r-cran-bio3d-2.4-1/man/bio3d.package.Rd:35: cna ==> can
data/r-cran-bio3d-2.4-1/man/dccm.gnm.Rd:33: stucture ==> structure
data/r-cran-bio3d-2.4-1/man/write.pqr.Rd:31: primarly ==> primarily
data/r-cran-bio3d-2.4-1/man/seqaln.Rd:18: identifers ==> identifiers
data/r-cran-bio3d-2.4-1/man/seqaln.Rd:76: specifiying ==> specifying
data/r-cran-bio3d-2.4-1/man/seqaln.Rd:84: metioned ==> mentioned
data/r-cran-bio3d-2.4-1/man/seqaln.Rd:105: identifers ==> identifiers
data/r-cran-bio3d-2.4-1/man/seqaln.Rd:132: alignemnt ==> alignment
data/r-cran-bio3d-2.4-1/man/plot.enma.Rd:46: alignement ==> alignment
data/r-cran-bio3d-2.4-1/man/elements.Rd:33: furhter ==> further
data/r-cran-bio3d-2.4-1/man/mask.dccm.Rd:68: correspoding ==> corresponding
data/r-cran-bio3d-2.4-1/man/check.utility.Rd:16: availabe ==> available
data/r-cran-bio3d-2.4-1/man/entropy.Rd:50: Ser ==> Set
data/r-cran-bio3d-2.4-1/man/rle2.Rd:8: modifed ==> modified
data/r-cran-bio3d-2.4-1/man/var.xyz.Rd:28: formated ==> formatted
data/r-cran-bio3d-2.4-1/man/write.mol2.Rd:15: primarly ==> primarily
data/r-cran-bio3d-2.4-1/man/dist.xyz.Rd:15: coresponding ==> corresponding
data/r-cran-bio3d-2.4-1/man/aa2index.Rd:5: indeces ==> indices
data/r-cran-bio3d-2.4-1/man/filter.identity.Rd:48: hist ==> heist, his
data/r-cran-bio3d-2.4-1/man/filter.identity.Rd:53: hist ==> heist, his
data/r-cran-bio3d-2.4-1/man/dccm.nma.Rd:44: stucture ==> structure
data/r-cran-bio3d-2.4-1/man/read.ncdf.Rd:21: begining ==> beginning
data/r-cran-bio3d-2.4-1/man/cna.Rd:1: cna ==> can
data/r-cran-bio3d-2.4-1/man/cna.Rd:2: cna ==> can
data/r-cran-bio3d-2.4-1/man/cna.Rd:3: cna ==> can
data/r-cran-bio3d-2.4-1/man/cna.Rd:4: cna ==> can
data/r-cran-bio3d-2.4-1/man/cna.Rd:15: cna ==> can
data/r-cran-bio3d-2.4-1/man/cna.Rd:16: cna ==> can
data/r-cran-bio3d-2.4-1/man/cna.Rd:19: cna ==> can
data/r-cran-bio3d-2.4-1/man/cna.Rd:28: cna ==> can
data/r-cran-bio3d-2.4-1/man/cna.Rd:28: cna ==> can
data/r-cran-bio3d-2.4-1/man/cna.Rd:31: optinal ==> optional
data/r-cran-bio3d-2.4-1/man/cna.Rd:45: specifing ==> specifying
data/r-cran-bio3d-2.4-1/man/cna.Rd:47: defualt ==> default
data/r-cran-bio3d-2.4-1/man/cna.Rd:49: maximium ==> maximum
data/r-cran-bio3d-2.4-1/man/cna.Rd:106: cna ==> can
data/r-cran-bio3d-2.4-1/man/cna.Rd:106: cna ==> can
data/r-cran-bio3d-2.4-1/man/cna.Rd:107: cna ==> can
data/r-cran-bio3d-2.4-1/man/cna.Rd:134: cna ==> can
data/r-cran-bio3d-2.4-1/man/cna.Rd:138: cna ==> can
data/r-cran-bio3d-2.4-1/man/cna.Rd:159: cna ==> can
data/r-cran-bio3d-2.4-1/man/cna.Rd:162: cna ==> can
data/r-cran-bio3d-2.4-1/man/cna.Rd:166: CNA ==> CAN
data/r-cran-bio3d-2.4-1/man/struct.aln.Rd:25: specifing ==> specifying
data/r-cran-bio3d-2.4-1/man/struct.aln.Rd:69: Stucture ==> Structure
data/r-cran-bio3d-2.4-1/man/struct.aln.Rd:72: Stucture ==> Structure
data/r-cran-bio3d-2.4-1/man/load.enmff.Rd:71: additonally ==> additionally
data/r-cran-bio3d-2.4-1/man/network.amendment.Rd:3: CNA ==> CAN
data/r-cran-bio3d-2.4-1/man/network.amendment.Rd:6: cna ==> can
data/r-cran-bio3d-2.4-1/man/network.amendment.Rd:13: cna ==> can
data/r-cran-bio3d-2.4-1/man/network.amendment.Rd:20: cna ==> can
data/r-cran-bio3d-2.4-1/man/network.amendment.Rd:26: cna ==> can
data/r-cran-bio3d-2.4-1/man/network.amendment.Rd:30: cna ==> can
data/r-cran-bio3d-2.4-1/man/network.amendment.Rd:30: cna ==> can
data/r-cran-bio3d-2.4-1/man/network.amendment.Rd:40: CNA ==> CAN
data/r-cran-bio3d-2.4-1/man/network.amendment.Rd:44: cna ==> can
data/r-cran-bio3d-2.4-1/man/network.amendment.Rd:49: CNA ==> CAN
data/r-cran-bio3d-2.4-1/man/cat.pdb.Rd:20: multipe ==> multiple
data/r-cran-bio3d-2.4-1/man/pdbaln.Rd:32: recomended ==> recommended
data/r-cran-bio3d-2.4-1/man/inspect.connectivity.Rd:39: Alignement ==> Alignment
data/r-cran-bio3d-2.4-1/man/prune.cna.Rd:1: cna ==> can
data/r-cran-bio3d-2.4-1/man/prune.cna.Rd:2: cna ==> can
data/r-cran-bio3d-2.4-1/man/prune.cna.Rd:3: cna ==> can
data/r-cran-bio3d-2.4-1/man/prune.cna.Rd:5: cna ==> can
data/r-cran-bio3d-2.4-1/man/prune.cna.Rd:8: cna ==> can
data/r-cran-bio3d-2.4-1/man/prune.cna.Rd:12: cna ==> can
data/r-cran-bio3d-2.4-1/man/prune.cna.Rd:22: cna ==> can
data/r-cran-bio3d-2.4-1/man/prune.cna.Rd:23: cna ==> can
data/r-cran-bio3d-2.4-1/man/prune.cna.Rd:27: cna ==> can
data/r-cran-bio3d-2.4-1/man/prune.cna.Rd:27: cna ==> can
data/r-cran-bio3d-2.4-1/man/prune.cna.Rd:42: cna ==> can
data/r-cran-bio3d-2.4-1/man/prune.cna.Rd:42: cna ==> can
data/r-cran-bio3d-2.4-1/man/prune.cna.Rd:43: cna ==> can
data/r-cran-bio3d-2.4-1/man/prune.cna.Rd:43: cna ==> can
data/r-cran-bio3d-2.4-1/man/prune.cna.Rd:60: cna ==> can
data/r-cran-bio3d-2.4-1/man/prune.cna.Rd:63: cna ==> can
data/r-cran-bio3d-2.4-1/man/community.tree.Rd:3: CNA ==> CAN
data/r-cran-bio3d-2.4-1/man/community.tree.Rd:6: cna ==> can
data/r-cran-bio3d-2.4-1/man/community.tree.Rd:14: cna ==> can
data/r-cran-bio3d-2.4-1/man/community.tree.Rd:30: cna ==> can
data/r-cran-bio3d-2.4-1/man/community.tree.Rd:40: cna ==> can
data/r-cran-bio3d-2.4-1/man/community.tree.Rd:40: cna ==> can
data/r-cran-bio3d-2.4-1/man/community.tree.Rd:50: CNA ==> CAN
data/r-cran-bio3d-2.4-1/man/community.tree.Rd:54: cna ==> can
data/r-cran-bio3d-2.4-1/man/community.tree.Rd:72: CNA ==> CAN
data/r-cran-bio3d-2.4-1/man/community.tree.Rd:81: cna ==> can
data/r-cran-bio3d-2.4-1/man/conserv.Rd:17: assesment ==> assessment
data/r-cran-bio3d-2.4-1/man/conserv.Rd:19: arbitary ==> arbitrary
data/r-cran-bio3d-2.4-1/man/get.pdb.Rd:21: alread ==> already
data/r-cran-bio3d-2.4-1/man/get.pdb.Rd:24: funciton ==> function
data/r-cran-bio3d-2.4-1/man/angle.xyz.Rd:25: sucessive ==> successive
data/r-cran-bio3d-2.4-1/man/angle.xyz.Rd:29: sucessive ==> successive
data/r-cran-bio3d-2.4-1/man/angle.xyz.Rd:45: hist ==> heist, his
data/r-cran-bio3d-2.4-1/man/as.fasta.Rd:14: identifers ==> identifiers
data/r-cran-bio3d-2.4-1/man/as.fasta.Rd:26: identifers ==> identifiers
data/r-cran-bio3d-2.4-1/man/pdb2aln.ind.Rd:28: rountine ==> routine
data/r-cran-bio3d-2.4-1/man/torsion.xyz.Rd:32: sucessive ==> successive
data/r-cran-bio3d-2.4-1/man/torsion.xyz.Rd:36: sucessive ==> successive
data/r-cran-bio3d-2.4-1/man/plot.fluct.Rd:32: correponding ==> corresponding
data/r-cran-bio3d-2.4-1/man/plot.fluct.Rd:32: postions ==> positions
data/r-cran-bio3d-2.4-1/man/seqbind.Rd:21: identifers ==> identifiers
data/r-cran-bio3d-2.4-1/man/fit.xyz.Rd:35: specifing ==> specifying
data/r-cran-bio3d-2.4-1/man/fit.xyz.Rd:110: outputing ==> outputting
data/r-cran-bio3d-2.4-1/man/consensus.Rd:14: beteen ==> between
data/r-cran-bio3d-2.4-1/man/pdb2aln.Rd:25: alignement ==> alignment
data/r-cran-bio3d-2.4-1/man/pdb2aln.Rd:44: identifers ==> identifiers
data/r-cran-bio3d-2.4-1/man/pdb2aln.Rd:51: alignement ==> alignment
data/r-cran-bio3d-2.4-1/man/read.fasta.Rd:3: formated ==> formatted
data/r-cran-bio3d-2.4-1/man/read.fasta.Rd:22: identifers ==> identifiers
data/r-cran-bio3d-2.4-1/man/atom2mass.Rd:42: splitted ==> split
data/r-cran-bio3d-2.4-1/man/core.cmap.Rd:21: speciyfing ==> specifying
data/r-cran-bio3d-2.4-1/man/seq2aln.Rd:3: Alignmnet ==> Alignment
data/r-cran-bio3d-2.4-1/man/seq2aln.Rd:19: identifers ==> identifiers
data/r-cran-bio3d-2.4-1/man/seq2aln.Rd:33: identifers ==> identifiers
data/r-cran-bio3d-2.4-1/man/write.fasta.Rd:3: Formated ==> Formatted
data/r-cran-bio3d-2.4-1/man/write.fasta.Rd:13: identifers ==> identifiers
data/r-cran-bio3d-2.4-1/man/geostas.Rd:49: specifing ==> specifying
data/r-cran-bio3d-2.4-1/man/geostas.Rd:155: stucture ==> structure
data/r-cran-bio3d-2.4-1/man/vmd.cna.Rd:3: cna ==> can
data/r-cran-bio3d-2.4-1/man/vmd.cna.Rd:5: CNA ==> CAN
data/r-cran-bio3d-2.4-1/man/vmd.cna.Rd:15: cna ==> can
data/r-cran-bio3d-2.4-1/man/vmd.cna.Rd:15: cna ==> can
data/r-cran-bio3d-2.4-1/man/vmd.cna.Rd:27: cna ==> can
data/r-cran-bio3d-2.4-1/man/vmd.cna.Rd:60: cna ==> can
data/r-cran-bio3d-2.4-1/man/vmd.cna.Rd:111: cna ==> can
data/r-cran-bio3d-2.4-1/man/vmd.cna.Rd:112: cna ==> can
data/r-cran-bio3d-2.4-1/man/vmd.cna.Rd:121: cna ==> can
data/r-cran-bio3d-2.4-1/man/vmd.cna.Rd:122: cna ==> can
data/r-cran-bio3d-2.4-1/man/pfam.Rd:11: familiy ==> family
data/r-cran-bio3d-2.4-1/man/dssp.Rd:135: Precent ==> Percent, prescient
data/r-cran-bio3d-2.4-1/man/mktrj.Rd:8: displacments ==> displacements
data/r-cran-bio3d-2.4-1/man/mktrj.Rd:92: stucture ==> structure
data/r-cran-bio3d-2.4-1/man/print.cna.Rd:1: cna ==> can
data/r-cran-bio3d-2.4-1/man/print.cna.Rd:2: cna ==> can
data/r-cran-bio3d-2.4-1/man/print.cna.Rd:3: cna ==> can
data/r-cran-bio3d-2.4-1/man/print.cna.Rd:4: cna ==> can
data/r-cran-bio3d-2.4-1/man/print.cna.Rd:6: cna ==> can
data/r-cran-bio3d-2.4-1/man/print.cna.Rd:10: cna ==> can
data/r-cran-bio3d-2.4-1/man/print.cna.Rd:11: cna ==> can
data/r-cran-bio3d-2.4-1/man/print.cna.Rd:14: cna ==> can
data/r-cran-bio3d-2.4-1/man/print.cna.Rd:15: cna ==> can
data/r-cran-bio3d-2.4-1/man/print.cna.Rd:16: cna ==> can
data/r-cran-bio3d-2.4-1/man/print.cna.Rd:17: cna ==> can
data/r-cran-bio3d-2.4-1/man/print.cna.Rd:27: cna ==> can
data/r-cran-bio3d-2.4-1/man/print.cna.Rd:41: cna ==> can
data/r-cran-bio3d-2.4-1/man/clean.pdb.Rd:41: unknow ==> unknown
data/r-cran-bio3d-2.4-1/man/plot.cna.Rd:1: cna ==> can
data/r-cran-bio3d-2.4-1/man/plot.cna.Rd:2: cna ==> can
data/r-cran-bio3d-2.4-1/man/plot.cna.Rd:5: cna ==> can
data/r-cran-bio3d-2.4-1/man/plot.cna.Rd:8: cna ==> can
data/r-cran-bio3d-2.4-1/man/plot.cna.Rd:14: cna ==> can
data/r-cran-bio3d-2.4-1/man/plot.cna.Rd:17: cna ==> can
data/r-cran-bio3d-2.4-1/man/plot.cna.Rd:26: cna ==> can
data/r-cran-bio3d-2.4-1/man/plot.cna.Rd:41: cna ==> can
data/r-cran-bio3d-2.4-1/man/plot.cna.Rd:44: cna ==> can
data/r-cran-bio3d-2.4-1/man/plot.cna.Rd:63: cna ==> can
data/r-cran-bio3d-2.4-1/man/plot.cna.Rd:71: cna ==> can
data/r-cran-bio3d-2.4-1/man/plot.cna.Rd:84: CNA ==> CAN
data/r-cran-bio3d-2.4-1/man/plot.cna.Rd:88: cna ==> can
data/r-cran-bio3d-2.4-1/man/plot.cna.Rd:91: cna ==> can
data/r-cran-bio3d-2.4-1/man/plot.cna.Rd:95: cna ==> can
data/r-cran-bio3d-2.4-1/man/plot.cna.Rd:98: cna ==> can
data/r-cran-bio3d-2.4-1/man/plot.cna.Rd:101: cna ==> can
data/r-cran-bio3d-2.4-1/man/plot.cna.Rd:104: cna ==> can
data/r-cran-bio3d-2.4-1/man/com.Rd:32: coordiantes ==> coordinates
data/r-cran-bio3d-2.4-1/man/com.Rd:59: Stucture ==> Structure
data/r-cran-bio3d-2.4-1/man/sdENM.Rd:5: dictonary ==> dictionary
data/r-cran-bio3d-2.4-1/man/sdENM.Rd:11: containg ==> containing
data/r-cran-bio3d-2.4-1/man/project.pca.Rd:25: origional ==> original
data/r-cran-bio3d-2.4-1/man/plot.fasta.Rd:14: alignement ==> alignment
data/r-cran-bio3d-2.4-1/man/dccm.enma.Rd:16: containt ==> contain, content
data/r-cran-bio3d-2.4-1/man/dccm.enma.Rd:53: Alignement ==> Alignment
data/r-cran-bio3d-2.4-1/man/core.find.Rd:124: invarient ==> invariant
data/r-cran-bio3d-2.4-1/man/seqidentity.Rd:50: hist ==> heist, his
data/r-cran-bio3d-2.4-1/man/identify.cna.Rd:1: cna ==> can
data/r-cran-bio3d-2.4-1/man/identify.cna.Rd:2: cna ==> can
data/r-cran-bio3d-2.4-1/man/identify.cna.Rd:3: CNA ==> CAN
data/r-cran-bio3d-2.4-1/man/identify.cna.Rd:5: cna ==> can
data/r-cran-bio3d-2.4-1/man/identify.cna.Rd:13: cna ==> can
data/r-cran-bio3d-2.4-1/man/identify.cna.Rd:13: cna ==> can
data/r-cran-bio3d-2.4-1/man/identify.cna.Rd:17: CNA ==> CAN
data/r-cran-bio3d-2.4-1/man/identify.cna.Rd:18: cna ==> can
data/r-cran-bio3d-2.4-1/man/identify.cna.Rd:23: cna ==> can
data/r-cran-bio3d-2.4-1/man/identify.cna.Rd:23: cna ==> can
data/r-cran-bio3d-2.4-1/man/identify.cna.Rd:27: cna ==> can
data/r-cran-bio3d-2.4-1/man/identify.cna.Rd:28: CNA ==> CAN
data/r-cran-bio3d-2.4-1/man/identify.cna.Rd:28: cna ==> can
data/r-cran-bio3d-2.4-1/man/identify.cna.Rd:33: cna ==> can
data/r-cran-bio3d-2.4-1/man/identify.cna.Rd:39: cna ==> can
data/r-cran-bio3d-2.4-1/man/identify.cna.Rd:54: cna ==> can
data/r-cran-bio3d-2.4-1/man/identify.cna.Rd:56: cna ==> can
data/r-cran-bio3d-2.4-1/man/identify.cna.Rd:57: cna ==> can
data/r-cran-bio3d-2.4-1/man/identify.cna.Rd:57: cna ==> can
data/r-cran-bio3d-2.4-1/man/plot.core.Rd:56: invarient ==> invariant
data/r-cran-bio3d-2.4-1/man/read.crd.amber.Rd:22: containg ==> containing
data/r-cran-bio3d-2.4-1/man/trim.pdbs.Rd:51: Alignement ==> Alignment
data/r-cran-bio3d-2.4-1/tests/testthat/test-nma.pdbs.R:58: Orthognal ==> Orthogonal
data/r-cran-bio3d-2.4-1/tests/testthat/test-cna.R:3: cna ==> can
data/r-cran-bio3d-2.4-1/tests/testthat/test-cna.R:22: cna ==> can
data/r-cran-bio3d-2.4-1/tests/testthat/test-nma.R:72: ouput ==> output
data/r-cran-bio3d-2.4-1/tests/testthat/test-nma.R:195: SER ==> SET
data/r-cran-bio3d-2.4-1/tests/testthat/test-aanma.pdbs.R:71: Orthognal ==> Orthogonal
data/r-cran-bio3d-2.4-1/tests/testthat/test-read.pdb.R:73: SER ==> SET
data/r-cran-bio3d-2.4-1/src/read_prmtop.cpp:38: imediately ==> immediately
data/r-cran-bio3d-2.4-1/R/prune.cna.R:1: cna ==> can
data/r-cran-bio3d-2.4-1/R/prune.cna.R:4: cna ==> can
data/r-cran-bio3d-2.4-1/R/prune.cna.R:13: cna ==> can
data/r-cran-bio3d-2.4-1/R/prune.cna.R:14: cna ==> can
data/r-cran-bio3d-2.4-1/R/prune.cna.R:17: cna ==> can
data/r-cran-bio3d-2.4-1/R/prune.cna.R:31: cant ==> can't
data/r-cran-bio3d-2.4-1/R/summary.cnapath.R:79: hist ==> heist, his
data/r-cran-bio3d-2.4-1/R/summary.cnapath.R:80: hist ==> heist, his
data/r-cran-bio3d-2.4-1/R/summary.cnapath.R:80: hist ==> heist, his
data/r-cran-bio3d-2.4-1/R/summary.cnapath.R:80: hist ==> heist, his
data/r-cran-bio3d-2.4-1/R/summary.cnapath.R:96: hist ==> heist, his
data/r-cran-bio3d-2.4-1/R/summary.cnapath.R:121: hist ==> heist, his
data/r-cran-bio3d-2.4-1/R/summary.cnapath.R:177: hist ==> heist, his
data/r-cran-bio3d-2.4-1/R/summary.cnapath.R:181: hist ==> heist, his
data/r-cran-bio3d-2.4-1/R/setup.ncore.R:26: varible ==> variable
data/r-cran-bio3d-2.4-1/R/core.cmap.R:40: ans ==> and
data/r-cran-bio3d-2.4-1/R/core.cmap.R:41: ans ==> and
data/r-cran-bio3d-2.4-1/R/core.cmap.R:41: ans ==> and
data/r-cran-bio3d-2.4-1/R/core.cmap.R:41: ans ==> and
data/r-cran-bio3d-2.4-1/R/core.cmap.R:42: ans ==> and
data/r-cran-bio3d-2.4-1/R/layout.cna.R:1: cna ==> can
data/r-cran-bio3d-2.4-1/R/layout.cna.R:10: cna ==> can
data/r-cran-bio3d-2.4-1/R/layout.cna.R:11: cna ==> can
data/r-cran-bio3d-2.4-1/R/layout.cna.R:12: cna ==> can
data/r-cran-bio3d-2.4-1/R/layout.cna.R:13: cna ==> can
data/r-cran-bio3d-2.4-1/R/layout.cna.R:21: cna ==> can
data/r-cran-bio3d-2.4-1/R/layout.cna.R:34: cna ==> can
data/r-cran-bio3d-2.4-1/R/plot.cna.R:1: cna ==> can
data/r-cran-bio3d-2.4-1/R/plot.cna.R:5: cna ==> can
data/r-cran-bio3d-2.4-1/R/plot.cna.R:7: cna ==> can
data/r-cran-bio3d-2.4-1/R/plot.cna.R:10: cna ==> can
data/r-cran-bio3d-2.4-1/R/plot.cna.R:11: cna ==> can
data/r-cran-bio3d-2.4-1/R/plot.cna.R:12: cna ==> can
data/r-cran-bio3d-2.4-1/R/plot.cna.R:12: cna ==> can
data/r-cran-bio3d-2.4-1/R/plot.cna.R:13: cna ==> can
data/r-cran-bio3d-2.4-1/R/plot.cna.R:13: cna ==> can
data/r-cran-bio3d-2.4-1/R/plot.cna.R:14: cna ==> can
data/r-cran-bio3d-2.4-1/R/plot.cna.R:14: cna ==> can
data/r-cran-bio3d-2.4-1/R/plot.cna.R:72: cna ==> can
data/r-cran-bio3d-2.4-1/R/plot.cna.R:90: cna ==> can
data/r-cran-bio3d-2.4-1/R/plot.cna.R:132: cna ==> can
data/r-cran-bio3d-2.4-1/R/cna.R:5: cna ==> can
data/r-cran-bio3d-2.4-1/R/cna.R:8: cna ==> can
data/r-cran-bio3d-2.4-1/R/write.crd.R:49: divisable ==> divisible
data/r-cran-bio3d-2.4-1/R/dccm.gnm.R:27: stucture ==> structure
data/r-cran-bio3d-2.4-1/R/deformation.nma.R:22: calcualte ==> calculate
data/r-cran-bio3d-2.4-1/R/pymol.dccm.R:189: CONECT ==> CONNECT
data/r-cran-bio3d-2.4-1/R/pymol.dccm.R:215: conect ==> connect
data/r-cran-bio3d-2.4-1/R/pdbs2pdb.R:14: indicies ==> indices
data/r-cran-bio3d-2.4-1/R/filter.identity.R:26: ans ==> and
data/r-cran-bio3d-2.4-1/R/filter.identity.R:27: ans ==> and
data/r-cran-bio3d-2.4-1/R/filter.identity.R:31: ans ==> and
data/r-cran-bio3d-2.4-1/R/read.mol2.R:219: insufficent ==> insufficient
data/r-cran-bio3d-2.4-1/R/dist.xyz.R:63: coresponding ==> corresponding
data/r-cran-bio3d-2.4-1/R/pdb2sse.R:13: seperated ==> separated
data/r-cran-bio3d-2.4-1/R/pymol.modes.R:143: conect ==> connect
data/r-cran-bio3d-2.4-1/R/write.pdb.R:102: divisable ==> divisible
data/r-cran-bio3d-2.4-1/R/write.pdb.R:234: sugested ==> suggested
data/r-cran-bio3d-2.4-1/R/get.seq.R:5: identifer ==> identifier
data/r-cran-bio3d-2.4-1/R/wrap.tor.R:25: struc ==> struct
data/r-cran-bio3d-2.4-1/R/wrap.tor.R:26: struc ==> struct
data/r-cran-bio3d-2.4-1/R/wrap.tor.R:26: struc ==> struct
data/r-cran-bio3d-2.4-1/R/wrap.tor.R:26: struc ==> struct
data/r-cran-bio3d-2.4-1/R/wrap.tor.R:28: struc ==> struct
data/r-cran-bio3d-2.4-1/R/wrap.tor.R:32: struc ==> struct
data/r-cran-bio3d-2.4-1/R/wrap.tor.R:35: struc ==> struct
data/r-cran-bio3d-2.4-1/R/wrap.tor.R:36: struc ==> struct
data/r-cran-bio3d-2.4-1/R/wrap.tor.R:38: struc ==> struct
data/r-cran-bio3d-2.4-1/R/wrap.tor.R:39: struc ==> struct
data/r-cran-bio3d-2.4-1/R/wrap.tor.R:41: struc ==> struct
data/r-cran-bio3d-2.4-1/R/wrap.tor.R:43: struc ==> struct
data/r-cran-bio3d-2.4-1/R/wrap.tor.R:47: struc ==> struct
data/r-cran-bio3d-2.4-1/R/aa123.R:16: SER ==> SET
data/r-cran-bio3d-2.4-1/R/filter.rmsd.R:30: ans ==> and
data/r-cran-bio3d-2.4-1/R/filter.rmsd.R:31: ans ==> and
data/r-cran-bio3d-2.4-1/R/filter.rmsd.R:35: ans ==> and
data/r-cran-bio3d-2.4-1/R/summary.cna.R:1: cna ==> can
data/r-cran-bio3d-2.4-1/R/summary.cna.R:3: cna ==> can
data/r-cran-bio3d-2.4-1/R/summary.cna.R:4: cna ==> can
data/r-cran-bio3d-2.4-1/R/summary.cna.R:7: cna ==> can
data/r-cran-bio3d-2.4-1/R/summary.cna.R:8: cna ==> can
data/r-cran-bio3d-2.4-1/R/summary.cna.R:15: curently ==> currently
data/r-cran-bio3d-2.4-1/R/pdbfit.R:17: insufficent ==> insufficient
data/r-cran-bio3d-2.4-1/R/filter.dccm.R:16: simmetric ==> symmetric
data/r-cran-bio3d-2.4-1/R/binding.site.R:52: insufficent ==> insufficient
data/r-cran-bio3d-2.4-1/R/binding.site.R:54: insufficent ==> insufficient
data/r-cran-bio3d-2.4-1/R/binding.site.R:71: insufficent ==> insufficient
data/r-cran-bio3d-2.4-1/R/binding.site.R:77: Calcuate ==> Calculate
data/r-cran-bio3d-2.4-1/R/pdbaln.R:15: spliting ==> splitting
data/r-cran-bio3d-2.4-1/R/pdbaln.R:127: nams ==> names
data/r-cran-bio3d-2.4-1/R/pdbaln.R:128: nams ==> names
data/r-cran-bio3d-2.4-1/R/print.cna.R:1: cna ==> can
data/r-cran-bio3d-2.4-1/R/print.cna.R:9: cna ==> can
data/r-cran-bio3d-2.4-1/R/print.fasta.R:62: formated ==> formatted
data/r-cran-bio3d-2.4-1/R/print.fasta.R:105: possilbe ==> possible
data/r-cran-bio3d-2.4-1/R/print.fasta.R:155: Formated ==> Formatted
data/r-cran-bio3d-2.4-1/R/print.fasta.R:167: Formated ==> Formatted
data/r-cran-bio3d-2.4-1/R/cna.dccm.R:1: cna ==> can
data/r-cran-bio3d-2.4-1/R/cna.dccm.R:225: cna ==> can
data/r-cran-bio3d-2.4-1/R/cna.ensmb.R:1: CNA ==> CAN
data/r-cran-bio3d-2.4-1/R/cna.ensmb.R:2: cna ==> can
data/r-cran-bio3d-2.4-1/R/cna.ensmb.R:10: cna ==> can
data/r-cran-bio3d-2.4-1/R/conserv.R:31: matchs ==> matches
data/r-cran-bio3d-2.4-1/R/cnapath.R:6: cna ==> can
data/r-cran-bio3d-2.4-1/R/cnapath.R:13: cna ==> can
data/r-cran-bio3d-2.4-1/R/cnapath.R:13: cna ==> can
data/r-cran-bio3d-2.4-1/R/cnapath.R:14: cna ==> can
data/r-cran-bio3d-2.4-1/R/cnapath.R:24: cna ==> can
data/r-cran-bio3d-2.4-1/R/cnapath.R:41: cna ==> can
data/r-cran-bio3d-2.4-1/R/cnapath.R:41: cna ==> can
data/r-cran-bio3d-2.4-1/R/cnapath.R:71: cna ==> can
data/r-cran-bio3d-2.4-1/R/cnapath.R:73: cna ==> can
data/r-cran-bio3d-2.4-1/R/aa2mass.R:34: SER ==> SET
data/r-cran-bio3d-2.4-1/R/mktrj.enma.R:11: displacments ==> displacements
data/r-cran-bio3d-2.4-1/R/community.aln.R:10: cna ==> can
data/r-cran-bio3d-2.4-1/R/community.aln.R:11: cna ==> can
data/r-cran-bio3d-2.4-1/R/community.aln.R:14: funciton ==> function
data/r-cran-bio3d-2.4-1/R/community.aln.R:20: cna ==> can
data/r-cran-bio3d-2.4-1/R/community.aln.R:22: cna ==> can
data/r-cran-bio3d-2.4-1/R/community.aln.R:23: cna ==> can
data/r-cran-bio3d-2.4-1/R/community.aln.R:26: cna ==> can
data/r-cran-bio3d-2.4-1/R/community.aln.R:28: cna ==> can
data/r-cran-bio3d-2.4-1/R/community.aln.R:28: cna ==> can
data/r-cran-bio3d-2.4-1/R/community.aln.R:28: cna ==> can
data/r-cran-bio3d-2.4-1/R/community.aln.R:43: Alignement ==> Alignment
data/r-cran-bio3d-2.4-1/R/community.aln.R:53: cna ==> can
data/r-cran-bio3d-2.4-1/R/community.aln.R:65: cna ==> can
data/r-cran-bio3d-2.4-1/R/community.aln.R:68: cna ==> can
data/r-cran-bio3d-2.4-1/R/community.aln.R:73: cna ==> can
data/r-cran-bio3d-2.4-1/R/community.aln.R:76: cna ==> can
data/r-cran-bio3d-2.4-1/R/aanma.pdb.R:119: stucture ==> structure
data/r-cran-bio3d-2.4-1/R/aanma.pdb.R:249: indivdual ==> individual
data/r-cran-bio3d-2.4-1/R/dccm.xyz.R:83: diagnol ==> diagonal
data/r-cran-bio3d-2.4-1/R/bounds.sse.R:3: funciton ==> function
data/r-cran-bio3d-2.4-1/R/consensus.R:14: maped ==> mapped
data/r-cran-bio3d-2.4-1/R/stride.R:65: Alph ==> Alpha
data/r-cran-bio3d-2.4-1/R/read.dcd.R:8: NAMD ==> NAMED, NAME
data/r-cran-bio3d-2.4-1/R/read.dcd.R:124: particulary ==> particularly
data/r-cran-bio3d-2.4-1/R/read.dcd.R:191: conection ==> connection
data/r-cran-bio3d-2.4-1/R/read.dcd.R:230: cant ==> can't
data/r-cran-bio3d-2.4-1/R/read.dcd.R:259: conection ==> connection
data/r-cran-bio3d-2.4-1/R/identify.cna.R:1: cna ==> can
data/r-cran-bio3d-2.4-1/R/identify.cna.R:1: cna ==> can
data/r-cran-bio3d-2.4-1/R/identify.cna.R:3: carefull ==> careful, carefully
data/r-cran-bio3d-2.4-1/R/identify.cna.R:5: cna ==> can
data/r-cran-bio3d-2.4-1/R/identify.cna.R:6: cna ==> can
data/r-cran-bio3d-2.4-1/R/identify.cna.R:7: cna ==> can
data/r-cran-bio3d-2.4-1/R/identify.cna.R:11: cna ==> can
data/r-cran-bio3d-2.4-1/R/identify.cna.R:11: cna ==> can
data/r-cran-bio3d-2.4-1/R/identify.cna.R:12: cna ==> can
data/r-cran-bio3d-2.4-1/R/identify.cna.R:31: cna ==> can
data/r-cran-bio3d-2.4-1/R/identify.cna.R:36: cna ==> can
data/r-cran-bio3d-2.4-1/R/identify.cna.R:37: cna ==> can
data/r-cran-bio3d-2.4-1/R/identify.cna.R:37: cna ==> can
data/r-cran-bio3d-2.4-1/R/network.amendment.R:9: cna ==> can
data/r-cran-bio3d-2.4-1/R/network.amendment.R:10: cna ==> can
data/r-cran-bio3d-2.4-1/R/plot.blast.R:39: suplied ==> supplied
data/r-cran-bio3d-2.4-1/R/aanma.pdbs.R:17: ommited ==> omitted
data/r-cran-bio3d-2.4-1/R/aanma.pdbs.R:39: specifing ==> specifying
data/r-cran-bio3d-2.4-1/R/aanma.pdbs.R:91: Alignement ==> Alignment
data/r-cran-bio3d-2.4-1/R/aanma.pdbs.R:285: calcualtion ==> calculation
data/r-cran-bio3d-2.4-1/R/community.tree.R:9: cna ==> can
data/r-cran-bio3d-2.4-1/R/community.tree.R:10: cna ==> can
data/r-cran-bio3d-2.4-1/R/rot.lsq.R:63: Ba ==> By, be
data/r-cran-bio3d-2.4-1/R/seqaln.R:59: dealign ==> dealing
data/r-cran-bio3d-2.4-1/R/seqaln.R:95: Alignmnet ==> Alignment
data/r-cran-bio3d-2.4-1/R/seqaln.R:266: dealign ==> dealing
data/r-cran-bio3d-2.4-1/R/seqaln.R:274: submited ==> submitted
data/r-cran-bio3d-2.4-1/R/orient.pdb.R:35: Mke ==> Make
data/r-cran-bio3d-2.4-1/R/gnm.R:52: stucture ==> structure
data/r-cran-bio3d-2.4-1/R/entropy.R:33: Ser ==> Set
data/r-cran-bio3d-2.4-1/R/write.pqr.R:101: divisable ==> divisible
data/r-cran-bio3d-2.4-1/R/write.pqr.R:119: imporvment ==> improvement
data/r-cran-bio3d-2.4-1/R/write.pqr.R:132: otions ==> options
data/r-cran-bio3d-2.4-1/R/load.enmff.R:119: Paramters ==> Parameters
data/r-cran-bio3d-2.4-1/R/load.enmff.R:139: correspondance ==> correspondence
data/r-cran-bio3d-2.4-1/R/mktrj.nma.R:10: displacments ==> displacements
data/r-cran-bio3d-2.4-1/R/gnm.pdbs.R:106: calcualtion ==> calculation
data/r-cran-bio3d-2.4-1/R/read.fasta.pdb.R:83: insufficent ==> insufficient
data/r-cran-bio3d-2.4-1/R/nma_funs.R:344: SER ==> SET
data/r-cran-bio3d-2.4-1/R/nma.pdbs.R:67: indicies ==> indices
data/r-cran-bio3d-2.4-1/R/nma.pdbs.R:91: ommit ==> omit
data/r-cran-bio3d-2.4-1/R/nma.pdbs.R:116: Coordiantes ==> Coordinates
data/r-cran-bio3d-2.4-1/R/nma.pdbs.R:191: calcualtion ==> calculation
data/r-cran-bio3d-2.4-1/R/struct.aln.R:20: insufficent ==> insufficient
data/r-cran-bio3d-2.4-1/R/struct.aln.R:35: insufficent ==> insufficient
data/r-cran-bio3d-2.4-1/R/clean.pdb.R:4: unknow ==> unknown
data/r-cran-bio3d-2.4-1/R/clean.pdb.R:201: ambiguious ==> ambiguous
data/r-cran-bio3d-2.4-1/R/clean.pdb.R:305: unknow ==> unknown
data/r-cran-bio3d-2.4-1/R/seqidentity.R:43: Ser ==> Set
data/r-cran-bio3d-2.4-1/R/pairwise.R:4: deternine ==> determine
data/r-cran-bio3d-2.4-1/R/pairwise.R:25: positve ==> positive
data/r-cran-bio3d-2.4-1/R/pdb.pfam.R:31: cant ==> can't
data/r-cran-bio3d-2.4-1/R/vmd.cna.R:1: cna ==> can
data/r-cran-bio3d-2.4-1/R/vmd.cna.R:1: cna ==> can
data/r-cran-bio3d-2.4-1/R/vmd.cna.R:10: cna ==> can
data/r-cran-bio3d-2.4-1/R/read.pdcBD.R:45: traling ==> trailing, trialing
data/r-cran-bio3d-2.4-1/R/formula2mass.R:10: eles ==> else
data/r-cran-bio3d-2.4-1/R/formula2mass.R:13: eles ==> else
data/r-cran-bio3d-2.4-1/R/formula2mass.R:14: eles ==> else
data/r-cran-bio3d-2.4-1/R/mktrj.pca.R:10: displacments ==> displacements
data/r-cran-bio3d-2.4-1/R/read.all.R:99: insufficent ==> insufficient
data/r-cran-bio3d-2.4-1/R/torsion.pdb.R:90: redundent ==> redundant
data/r-cran-bio3d-2.4-1/inst/examples/test.pdb:52: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/test.pdb:53: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/test.pdb:54: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/test.pdb:55: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/test.pdb:56: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/test.pdb:57: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/test.pdb:58: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/test.pdb:59: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/test.pdb:60: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/test.pdb:61: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/test.pdb:62: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/test.pdb:71: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/test.pdb:72: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/test.pdb:73: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/test.pdb:74: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/test.pdb:75: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/test.pdb:76: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/test.pdb:77: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/test.pdb:78: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/test.pdb:79: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/test.pdb:80: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/test.pdb:81: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/hivp.pdb:58: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/hivp.pdb:157: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/crambin.prmtop:522: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/crambin.prmtop:522: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/crambin.prmtop:523: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1hel.pdb:322: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1hel.pdb:323: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1hel.pdb:324: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1hel.pdb:325: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1hel.pdb:326: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1hel.pdb:327: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1hel.pdb:327: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1hel.pdb:327: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1hel.pdb:327: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1hel.pdb:328: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1hel.pdb:335: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1hel.pdb:340: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1hel.pdb:341: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1hel.pdb:341: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1hel.pdb:538: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1hel.pdb:539: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1hel.pdb:540: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1hel.pdb:541: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1hel.pdb:542: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1hel.pdb:543: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1hel.pdb:630: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1hel.pdb:631: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1hel.pdb:632: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1hel.pdb:633: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1hel.pdb:634: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1hel.pdb:635: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1hel.pdb:737: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1hel.pdb:738: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1hel.pdb:739: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1hel.pdb:740: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1hel.pdb:741: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1hel.pdb:742: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1hel.pdb:815: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1hel.pdb:816: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1hel.pdb:817: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1hel.pdb:818: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1hel.pdb:819: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1hel.pdb:820: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1hel.pdb:915: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1hel.pdb:916: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1hel.pdb:917: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1hel.pdb:918: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1hel.pdb:919: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1hel.pdb:920: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1hel.pdb:983: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1hel.pdb:984: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1hel.pdb:985: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1hel.pdb:986: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1hel.pdb:987: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1hel.pdb:988: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1hel.pdb:1010: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1hel.pdb:1011: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1hel.pdb:1012: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1hel.pdb:1013: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1hel.pdb:1014: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1hel.pdb:1015: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1hel.pdb:1016: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1hel.pdb:1017: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1hel.pdb:1018: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1hel.pdb:1019: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1hel.pdb:1020: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1hel.pdb:1021: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1hel.pdb:1050: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1hel.pdb:1051: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1hel.pdb:1052: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1hel.pdb:1053: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1hel.pdb:1054: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1hel.pdb:1055: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1hel.pdb:1115: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1hel.pdb:1116: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1hel.pdb:1117: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1hel.pdb:1118: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1hel.pdb:1119: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1hel.pdb:1120: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:321: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:322: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:323: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:324: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:325: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:326: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:326: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:326: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:326: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:327: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:336: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:337: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:338: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:350: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:552: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:553: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:554: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:555: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:556: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:557: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:644: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:645: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:646: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:647: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:648: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:649: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:751: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:752: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:753: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:754: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:755: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:756: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:829: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:830: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:831: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:832: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:833: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:834: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:929: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:930: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:931: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:932: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:933: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:934: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:1001: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:1002: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:1003: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:1004: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:1005: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:1006: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:1028: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:1029: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:1030: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:1031: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:1036: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:1037: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:1038: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:1039: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:1040: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:1041: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:1070: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:1071: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:1072: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:1073: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:1074: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:1075: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:1135: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:1136: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:1137: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:1138: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:1139: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:1140: SER ==> SET
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:1551: CONECT ==> CONNECT
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:1552: CONECT ==> CONNECT
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:1553: CONECT ==> CONNECT
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:1554: CONECT ==> CONNECT
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:1555: CONECT ==> CONNECT
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:1556: CONECT ==> CONNECT
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:1557: CONECT ==> CONNECT
data/r-cran-bio3d-2.4-1/inst/examples/1dpx.pdb:1558: CONECT ==> CONNECT
data/r-cran-bio3d-2.4-1/inst/matrices/properties.mat:22: burried ==> buried
data/r-cran-bio3d-2.4-1/inst/staticdocs/index.r:226: cna ==> can
data/r-cran-bio3d-2.4-1/inst/staticdocs/index.r:230: cna ==> can
data/r-cran-bio3d-2.4-1/inst/staticdocs/index.r:239: cna ==> can
data/r-cran-bio3d-2.4-1/inst/staticdocs/index.r:242: cna ==> can
data/r-cran-bio3d-2.4-1/inst/staticdocs/index.r:243: cna ==> can
data/r-cran-bio3d-2.4-1/inst/staticdocs/index.r:244: cna ==> can
data/r-cran-bio3d-2.4-1/inst/staticdocs/index.r:245: cna ==> can
data/r-cran-bio3d-2.4-1/inst/staticdocs/index.r:246: cna ==> can
data/r-cran-bio3d-2.4-1/inst/staticdocs/index.r:269: cna ==> can
data/r-cran-bio3d-2.4-1/inst/staticdocs/index.r:319: cna ==> can
data/r-cran-bio3d-2.4-1/debian/README.source:24: cna ==> can
data/r-cran-bio3d-2.4-1/debian/README.source:32: dictonary ==> dictionary
data/r-cran-bio3d-2.4-1/debian/changelog:181: informations ==> information